Wall clock time and date at job start Tue Mar 31 2020 01:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47078 * 2 1 4 4 C 1.34238 * 117.00083 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00074 * 179.97438 * 4 3 2 7 7 N 1.46494 * 109.47123 * 179.97438 * 6 4 3 8 8 C 1.46493 * 120.00443 * 270.27911 * 7 6 4 9 9 C 1.50702 * 109.47036 * 269.72285 * 8 7 6 10 10 H 1.07999 * 119.99972 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99945 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00550 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99887 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46951 * 89.99923 * 13 11 9 15 15 H 1.48499 * 109.47146 * 210.00270 * 13 11 9 16 16 H 1.48504 * 109.46989 * 330.00426 * 13 11 9 17 17 C 1.39055 * 119.99550 * 89.99860 * 7 6 4 18 18 C 1.39472 * 120.15839 * 5.00465 * 17 7 6 19 19 C 1.38561 * 117.90471 * 179.97438 * 18 17 7 20 20 C 1.50707 * 120.98303 * 180.02562 * 19 18 17 21 21 C 1.38813 * 118.04038 * 359.97438 * 19 18 17 22 22 N 1.31795 * 120.01422 * 0.02562 * 21 19 18 23 23 N 1.28355 * 122.28170 * 359.65959 * 22 21 19 24 24 H 1.08992 * 109.46972 * 300.00387 * 1 2 3 25 25 H 1.09002 * 109.46518 * 60.00518 * 1 2 3 26 26 H 1.08999 * 109.46769 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47470 * 239.99444 * 2 1 3 28 28 H 1.09002 * 109.46518 * 119.99482 * 2 1 3 29 29 H 1.08998 * 109.46701 * 59.99948 * 6 4 3 30 30 H 1.09000 * 109.46701 * 300.00179 * 6 4 3 31 31 H 1.09003 * 109.46881 * 29.72163 * 8 7 6 32 32 H 1.08996 * 109.47538 * 149.72252 * 8 7 6 33 33 H 0.96991 * 120.00408 * 179.97438 * 12 11 9 34 34 H 1.08004 * 121.05214 * 0.02562 * 18 17 7 35 35 H 1.08993 * 109.46708 * 89.99809 * 20 19 18 36 36 H 1.08992 * 109.47088 * 210.00059 * 20 19 18 37 37 H 1.09003 * 109.46955 * 330.00144 * 20 19 18 38 38 H 1.07999 * 119.99666 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3837 2.8608 0.0014 8 6 6.1138 2.8172 1.2706 9 6 6.4445 4.2209 1.7083 10 1 6.1407 5.0613 1.1019 11 6 7.1338 4.4321 2.8835 12 7 7.5033 3.4088 3.6224 13 14 7.5431 6.1721 3.4265 14 1 6.4400 6.7001 4.2689 15 1 8.8039 6.1622 4.2109 16 1 7.7105 7.0372 2.2310 17 6 6.0790 2.8234 -1.2023 18 6 5.3964 2.9636 -2.4105 19 6 6.1355 2.9198 -3.5817 20 6 5.4688 3.0645 -4.9256 21 6 7.5082 2.7399 -3.4808 22 7 8.0715 2.6159 -2.2958 23 7 7.3940 2.6614 -1.2065 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.5844 3.4700 0.8895 30 1 3.5852 3.4690 -0.8905 31 1 5.4959 2.3362 2.0289 32 1 7.0358 2.2506 1.1403 33 1 7.9886 3.5575 4.4489 34 1 4.3256 3.1028 -2.4324 35 1 5.4392 4.1176 -5.2048 36 1 6.0326 2.5061 -5.6728 37 1 4.4525 2.6744 -4.8708 38 1 8.1148 2.7014 -4.3735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:33 Heat of formation + Delta-G solvation = -20.276521 kcal Electronic energy + Delta-G solvation = -21802.628403 eV Core-core repulsion = 18453.278984 eV Total energy + Delta-G solvation = -3349.349420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60033 -40.06684 -37.03717 -35.85127 -34.04725 -32.77300 -31.89131 -30.79485 -28.95148 -27.78123 -26.16408 -23.89695 -23.05106 -22.97437 -21.32556 -20.16623 -17.68978 -17.20409 -16.87509 -16.46953 -16.30970 -16.17216 -15.46843 -14.69479 -14.52064 -14.29431 -13.65667 -13.40633 -13.34974 -13.01184 -12.88303 -12.83285 -12.36339 -12.28346 -12.12089 -11.66731 -11.59470 -11.24734 -11.08237 -10.63393 -10.60660 -10.50166 -10.46479 -10.12046 -10.04542 -9.46169 -9.28333 -8.88927 -8.43520 -7.20917 -6.03281 -4.10369 1.34468 1.73972 2.42660 2.68917 3.30103 3.37536 3.40762 3.56610 4.26231 4.43560 4.72247 4.81315 4.83391 4.94593 4.97659 4.99888 5.06956 5.18663 5.19601 5.29672 5.38479 5.49844 5.54160 5.60789 5.65499 5.68408 5.82803 5.85156 6.14236 6.38566 6.52356 6.56105 6.97718 7.45231 7.71930 7.88130 8.00013 8.06211 8.20116 8.92606 9.53360 9.57621 11.03537 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.006836 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.094410 B = 4095.256758 C = 6128.613366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.434 3.566 5 O -0.490 6.490 6 C 0.136 3.864 7 N -0.563 5.563 8 C 0.255 3.745 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.366 3.634 18 C -0.204 4.204 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.041 4.041 22 N -0.200 5.200 23 N -0.280 5.280 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -2.567 -12.939 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.274 3.726 5 O -0.376 6.376 6 C 0.008 3.992 7 N -0.272 5.272 8 C 0.137 3.863 9 C -0.569 4.569 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.125 3.875 18 C -0.238 4.238 19 C -0.063 4.063 20 C -0.166 4.166 21 C -0.210 4.210 22 N -0.041 5.041 23 N -0.133 5.133 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.126 0.874 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.548 -3.155 -11.652 16.706 hybrid contribution -1.079 0.882 -0.411 1.453 sum -12.628 -2.273 -12.062 17.610 Atomic orbital electron populations 1.21791 0.92809 1.02724 1.03436 1.22961 0.95114 0.80802 1.02496 1.86508 1.24992 1.32018 1.84539 1.25067 0.80374 0.94313 0.72871 1.90693 1.60257 1.42857 1.43746 1.20912 0.81955 0.89648 1.06688 1.46700 1.02122 1.73294 1.05104 1.19446 0.92588 0.97621 0.76652 1.21410 1.36953 0.92203 1.06362 0.92370 1.24910 0.95348 0.97229 0.96324 1.69936 1.38743 1.29978 1.14252 0.86499 0.77869 0.84444 0.78593 1.20686 1.21046 1.19921 1.20012 0.91363 0.89559 0.86554 1.21632 1.01132 1.09210 0.91817 1.20784 0.94657 0.95024 0.95840 1.20741 1.00472 1.02707 0.92699 1.23750 0.92949 1.06003 0.98318 1.72830 1.30804 1.05402 0.95092 1.73218 1.03870 1.17474 1.18747 0.91415 0.91614 0.90500 0.91576 0.91301 0.85105 0.87356 0.95208 0.92646 0.92622 0.84757 0.90451 0.90874 0.91274 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.09 10.22 -39.28 -0.40 -5.50 16 4 C 0.43 7.33 8.03 36.01 0.29 7.61 16 5 O -0.49 -10.16 16.18 -18.74 -0.30 -10.46 16 6 C 0.14 2.22 5.86 -5.20 -0.03 2.19 16 7 N -0.56 -12.11 2.06 -176.44 -0.36 -12.47 16 8 C 0.26 6.70 5.23 -5.20 -0.03 6.67 16 9 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 13 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.37 7.78 7.45 -154.77 -1.15 6.63 16 18 C -0.20 -3.39 9.07 -39.00 -0.35 -3.74 16 19 C -0.05 -0.76 5.92 -104.29 -0.62 -1.38 16 20 C -0.11 -1.03 10.07 36.01 0.36 -0.67 16 21 C -0.04 -0.67 11.03 -17.35 -0.19 -0.86 16 22 N -0.20 -4.23 11.49 30.57 0.35 -3.88 16 23 N -0.28 -6.70 10.27 31.23 0.32 -6.38 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 29 H 0.13 2.02 8.07 -51.93 -0.42 1.60 16 30 H 0.11 1.38 6.03 -51.93 -0.31 1.06 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 32 H 0.06 1.65 7.33 -51.93 -0.38 1.27 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.13 1.80 6.14 -52.48 -0.32 1.47 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.58 8.11 -51.93 -0.42 0.15 16 37 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -34.78 333.22 -6.39 -41.17 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.20 Total: -1.70 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.53 Total: 3.26 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 1.04 Total: -48.45 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.70 Total: -15.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.78 -6.39 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.896 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds