Wall clock time and date at job start Tue Mar 31 2020 01:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47078 * 2 1 4 4 C 1.34238 * 117.00083 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00074 * 179.97438 * 4 3 2 7 7 N 1.46494 * 109.47123 * 179.97438 * 6 4 3 8 8 C 1.46493 * 120.00443 * 270.27911 * 7 6 4 9 9 C 1.50702 * 109.47036 * 269.72285 * 8 7 6 10 10 H 1.07999 * 119.99972 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99945 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00550 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99887 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46951 * 89.99923 * 13 11 9 15 15 H 1.48499 * 109.47146 * 210.00270 * 13 11 9 16 16 H 1.48504 * 109.46989 * 330.00426 * 13 11 9 17 17 C 1.39055 * 119.99550 * 89.99860 * 7 6 4 18 18 C 1.39472 * 120.15839 * 5.00465 * 17 7 6 19 19 C 1.38561 * 117.90471 * 179.97438 * 18 17 7 20 20 C 1.50707 * 120.98303 * 180.02562 * 19 18 17 21 21 C 1.38813 * 118.04038 * 359.97438 * 19 18 17 22 22 N 1.31795 * 120.01422 * 0.02562 * 21 19 18 23 23 N 1.28355 * 122.28170 * 359.65959 * 22 21 19 24 24 H 1.08992 * 109.46972 * 300.00387 * 1 2 3 25 25 H 1.09002 * 109.46518 * 60.00518 * 1 2 3 26 26 H 1.08999 * 109.46769 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47470 * 239.99444 * 2 1 3 28 28 H 1.09002 * 109.46518 * 119.99482 * 2 1 3 29 29 H 1.08998 * 109.46701 * 59.99948 * 6 4 3 30 30 H 1.09000 * 109.46701 * 300.00179 * 6 4 3 31 31 H 1.09003 * 109.46881 * 29.72163 * 8 7 6 32 32 H 1.08996 * 109.47538 * 149.72252 * 8 7 6 33 33 H 0.96991 * 120.00408 * 179.97438 * 12 11 9 34 34 H 1.08004 * 121.05214 * 0.02562 * 18 17 7 35 35 H 1.08993 * 109.46708 * 89.99809 * 20 19 18 36 36 H 1.08992 * 109.47088 * 210.00059 * 20 19 18 37 37 H 1.09003 * 109.46955 * 330.00144 * 20 19 18 38 38 H 1.07999 * 119.99666 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3837 2.8608 0.0014 8 6 6.1138 2.8172 1.2706 9 6 6.4445 4.2209 1.7083 10 1 6.1407 5.0613 1.1019 11 6 7.1338 4.4321 2.8835 12 7 7.5033 3.4088 3.6224 13 14 7.5431 6.1721 3.4265 14 1 6.4400 6.7001 4.2689 15 1 8.8039 6.1622 4.2109 16 1 7.7105 7.0372 2.2310 17 6 6.0790 2.8234 -1.2023 18 6 5.3964 2.9636 -2.4105 19 6 6.1355 2.9198 -3.5817 20 6 5.4688 3.0645 -4.9256 21 6 7.5082 2.7399 -3.4808 22 7 8.0715 2.6159 -2.2958 23 7 7.3940 2.6614 -1.2065 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.5844 3.4700 0.8895 30 1 3.5852 3.4690 -0.8905 31 1 5.4959 2.3362 2.0289 32 1 7.0358 2.2506 1.1403 33 1 7.9886 3.5575 4.4489 34 1 4.3256 3.1028 -2.4324 35 1 5.4392 4.1176 -5.2048 36 1 6.0326 2.5061 -5.6728 37 1 4.4525 2.6744 -4.8708 38 1 8.1148 2.7014 -4.3735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:33 Heat of formation + Delta-G solvation = -42.612196 kcal Electronic energy + Delta-G solvation = -21803.596951 eV Core-core repulsion = 18453.278984 eV Total energy + Delta-G solvation = -3350.317967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99344 -41.39488 -38.42776 -37.30431 -35.28294 -34.84234 -32.84781 -32.21923 -30.59432 -28.89281 -27.87556 -25.14827 -24.90289 -24.00899 -22.63639 -21.57438 -19.09435 -18.69356 -18.42446 -18.18294 -17.59161 -17.45618 -16.92662 -16.47856 -15.97661 -15.46094 -15.15893 -14.68139 -14.57443 -14.27558 -13.94491 -13.87729 -13.63187 -13.35560 -13.26202 -13.05554 -12.94849 -12.74188 -12.54541 -12.51341 -12.33016 -12.20997 -11.74060 -11.60691 -11.55119 -11.28161 -10.62693 -10.57066 -10.29289 -8.86717 -8.15952 -6.34612 0.04160 0.38388 1.09942 1.37525 1.41664 1.45436 1.52927 2.11812 2.40888 2.85913 3.10813 3.49015 3.69842 3.71336 3.82405 3.88424 3.98218 4.08987 4.12935 4.14126 4.32921 4.33754 4.59303 4.81665 4.85542 4.87129 4.93345 5.00316 5.09707 5.12875 5.21462 5.27526 5.41072 5.51391 5.67406 6.03132 6.11494 6.32425 6.72135 6.76832 7.34988 8.12952 8.88289 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.006836 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.094410 B = 4095.256758 C = 6128.613366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.442 3.558 5 O -0.537 6.537 6 C 0.133 3.867 7 N -0.578 5.578 8 C 0.280 3.720 9 C -0.535 4.535 10 H 0.060 0.940 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.970 3.030 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.341 3.659 18 C -0.202 4.202 19 C -0.038 4.038 20 C -0.104 4.104 21 C -0.031 4.031 22 N -0.248 5.248 23 N -0.352 5.352 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.170 0.830 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 -0.974 -15.764 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.284 3.716 5 O -0.426 6.426 6 C 0.007 3.993 7 N -0.289 5.289 8 C 0.159 3.841 9 C -0.574 4.574 10 H 0.078 0.922 11 C -0.190 4.190 12 N -0.570 5.570 13 Si 0.794 3.206 14 H -0.188 1.188 15 H -0.210 1.210 16 H -0.196 1.196 17 C 0.100 3.900 18 C -0.234 4.234 19 C -0.049 4.049 20 C -0.161 4.161 21 C -0.202 4.202 22 N -0.087 5.087 23 N -0.203 5.203 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.171 0.829 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.188 0.812 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.014 -1.557 -14.501 20.226 hybrid contribution -0.370 0.298 0.259 0.541 sum -14.384 -1.259 -14.242 20.281 Atomic orbital electron populations 1.21808 0.89577 1.04403 1.04051 1.23295 0.97547 0.79441 1.02028 1.86505 1.23117 1.33564 1.83718 1.25115 0.80961 0.93940 0.71566 1.90684 1.61509 1.44274 1.46153 1.21217 0.79134 0.89800 1.09112 1.46423 1.03873 1.74840 1.03733 1.18708 0.90735 0.96083 0.78596 1.21664 1.36655 0.92736 1.06326 0.92222 1.25862 0.95139 1.01581 0.96457 1.70082 1.39705 1.32452 1.14803 0.85383 0.77931 0.79050 0.78197 1.18763 1.21039 1.19613 1.20338 0.91294 0.90559 0.87811 1.22019 1.02836 1.08061 0.90520 1.21424 0.93888 0.91845 0.97766 1.20900 1.01153 1.04577 0.89462 1.24540 0.94715 1.02963 0.98006 1.72683 1.31953 1.07824 0.96212 1.73028 1.05907 1.20560 1.20819 0.91268 0.90472 0.88285 0.91455 0.92578 0.84432 0.82928 0.97591 0.97606 0.92512 0.81236 0.88238 0.88663 0.89475 0.78428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.13 6.19 71.98 0.45 1.58 16 3 O -0.35 -9.46 10.22 -51.49 -0.53 -9.99 16 4 C 0.44 14.91 8.03 71.24 0.57 15.48 16 5 O -0.54 -23.09 16.18 21.98 0.36 -22.73 16 6 C 0.13 4.28 5.86 85.64 0.50 4.78 16 7 N -0.58 -25.70 2.06 -712.13 -1.47 -27.17 16 8 C 0.28 15.67 5.23 85.64 0.45 16.12 16 9 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 10 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 11 C 0.01 0.49 5.46 84.65 0.46 0.95 16 12 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 13 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.34 14.82 7.45 133.10 0.99 15.81 16 18 C -0.20 -6.27 9.07 22.64 0.21 -6.06 16 19 C -0.04 -0.99 5.92 -19.65 -0.12 -1.11 16 20 C -0.10 -1.38 10.07 71.24 0.72 -0.66 16 21 C -0.03 -0.95 11.03 84.84 0.94 -0.01 16 22 N -0.25 -10.80 11.49 -57.20 -0.66 -11.46 16 23 N -0.35 -17.74 10.27 -55.10 -0.57 -18.30 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 29 H 0.14 4.20 8.07 -2.39 -0.02 4.18 16 30 H 0.15 3.43 6.03 -2.39 -0.01 3.42 16 31 H 0.01 0.36 8.07 -2.39 -0.02 0.34 16 32 H 0.01 0.38 7.33 -2.39 -0.02 0.36 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.17 3.85 6.14 -2.91 -0.02 3.84 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.93 8.11 -2.39 -0.02 0.91 16 37 H 0.09 0.93 8.11 -2.39 -0.02 0.91 16 38 H 0.20 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -83.40 333.22 6.65 -76.75 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.06 Total: 7.93 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 6.14 Total: 15.14 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -2.41 Total: -114.34 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.17 Total: -32.72 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -83.40 6.65 -76.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.133 kcal (2) G-P(sol) polarization free energy of solvation -83.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds