Wall clock time and date at job start Tue Mar 31 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47411 * 2 1 4 4 C 1.34222 * 117.00044 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99888 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47479 * 180.02562 * 6 4 3 8 8 C 1.46495 * 120.00005 * 270.00483 * 7 6 4 9 9 C 1.50703 * 109.47143 * 269.99577 * 8 7 6 10 10 H 1.07999 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99801 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99821 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00440 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47205 * 89.99654 * 13 11 9 15 15 H 1.48501 * 109.47683 * 209.99952 * 13 11 9 16 16 H 1.48501 * 109.46951 * 330.00240 * 13 11 9 17 17 C 1.38989 * 119.99735 * 90.00090 * 7 6 4 18 18 C 1.39006 * 119.66441 * 5.30239 * 17 7 6 19 19 C 1.38502 * 119.26281 * 180.25611 * 18 17 7 20 20 C 1.38563 * 118.58620 * 359.45305 * 19 18 17 21 21 C 1.38957 * 119.26036 * 0.27815 * 20 19 18 22 22 N 1.38990 * 119.65593 * 180.02562 * 21 20 19 23 23 N 1.32465 * 119.65851 * 185.00280 * 17 7 6 24 24 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47256 * 300.00059 * 1 2 3 26 26 H 1.08994 * 109.47153 * 60.00066 * 1 2 3 27 27 H 1.08997 * 109.47256 * 239.99941 * 2 1 3 28 28 H 1.09007 * 109.47107 * 120.00226 * 2 1 3 29 29 H 1.09004 * 109.46902 * 60.00674 * 6 4 3 30 30 H 1.09000 * 109.47598 * 300.00810 * 6 4 3 31 31 H 1.09002 * 109.47111 * 29.99660 * 8 7 6 32 32 H 1.08999 * 109.47290 * 149.99472 * 8 7 6 33 33 H 0.96996 * 120.00447 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.36640 * 0.02562 * 18 17 7 35 35 H 1.08002 * 120.70965 * 179.73359 * 19 18 17 36 36 H 1.08000 * 120.36479 * 180.25643 * 20 19 18 37 37 H 0.97002 * 120.00348 * 0.02562 * 22 21 20 38 38 H 0.97004 * 120.00035 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3838 2.8607 0.0001 8 6 6.1152 2.8228 1.2689 9 6 6.4404 4.2287 1.7034 10 1 6.1326 5.0666 1.0955 11 6 7.1308 4.4452 2.8770 12 7 7.4141 5.6721 3.2565 13 14 7.6637 2.9959 3.9282 14 1 9.0155 2.5489 3.5061 15 1 7.7011 3.4063 5.3549 16 1 6.6983 1.8803 3.7591 17 6 6.0778 2.8239 -1.2035 18 6 5.3870 2.9713 -2.4008 19 6 6.0862 2.9280 -3.5956 20 6 7.4596 2.7494 -3.5539 21 6 8.0900 2.6141 -2.3230 22 7 9.4673 2.4352 -2.2716 23 7 7.3916 2.6545 -1.1977 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.5845 3.4699 0.8896 30 1 3.5852 3.4691 -0.8904 31 1 5.4999 2.3408 2.0287 32 1 7.0394 2.2598 1.1388 33 1 7.9002 5.8245 4.0820 34 1 4.3166 3.1144 -2.3994 35 1 5.5725 3.0356 -4.5395 36 1 8.0337 2.7154 -4.4681 37 1 9.9836 2.4056 -3.0923 38 1 9.9125 2.3406 -1.4150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:31 Heat of formation + Delta-G solvation = -28.900995 kcal Electronic energy + Delta-G solvation = -21865.282563 eV Core-core repulsion = 18515.559159 eV Total energy + Delta-G solvation = -3349.723405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33224 -39.51734 -36.90201 -35.80835 -33.75573 -32.48350 -31.90258 -31.47083 -29.14871 -28.34090 -26.14465 -23.37873 -22.97745 -21.97715 -21.22629 -20.11512 -17.63370 -17.28185 -16.85703 -16.76796 -16.44512 -15.99802 -15.44906 -14.94551 -14.73443 -14.15652 -14.07294 -13.81058 -13.36270 -13.15090 -12.85206 -12.67847 -12.41196 -12.11195 -11.73929 -11.64210 -11.57642 -11.37405 -11.09724 -10.70161 -10.46529 -10.44596 -10.21097 -10.05780 -9.58307 -9.25832 -8.70413 -8.54206 -7.86225 -6.74274 -6.05933 -4.03693 2.08013 2.10170 2.49413 2.77069 3.31395 3.37237 3.41923 3.59553 4.17155 4.42712 4.63636 4.86071 4.87523 5.00633 5.16146 5.21032 5.25892 5.33843 5.59455 5.63531 5.68344 5.69828 5.77008 5.85953 5.92051 5.97675 6.39635 6.58875 6.67727 6.86051 6.94421 7.11646 7.49316 7.63146 7.75688 7.95250 8.08779 8.15836 8.54532 8.97505 9.04763 9.55046 11.07267 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.007442 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.880940 B = 3761.699091 C = 5767.234038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.436 3.564 5 O -0.495 6.495 6 C 0.140 3.860 7 N -0.569 5.569 8 C 0.229 3.771 9 C -0.524 4.524 10 H 0.076 0.924 11 C 0.074 3.926 12 N -0.899 5.899 13 Si 0.873 3.127 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.471 3.529 18 C -0.311 4.311 19 C 0.000 4.000 20 C -0.314 4.314 21 C 0.446 3.554 22 N -0.856 5.856 23 N -0.574 5.574 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.402 0.598 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 -8.536 -11.118 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.276 3.724 5 O -0.380 6.380 6 C 0.012 3.988 7 N -0.278 5.278 8 C 0.108 3.892 9 C -0.563 4.563 10 H 0.094 0.906 11 C -0.128 4.128 12 N -0.537 5.537 13 Si 0.700 3.300 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.191 1.191 17 C 0.234 3.766 18 C -0.337 4.337 19 C -0.025 4.025 20 C -0.341 4.341 21 C 0.207 3.793 22 N -0.399 5.399 23 N -0.300 5.300 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.231 0.769 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.630 -8.834 -9.998 15.370 hybrid contribution 0.404 -0.820 -0.063 0.916 sum -7.226 -9.654 -10.062 15.705 Atomic orbital electron populations 1.21789 0.92852 1.02658 1.03481 1.22945 0.95105 0.80936 1.02378 1.86519 1.25098 1.31867 1.84512 1.25170 0.80272 0.94429 0.72579 1.90666 1.60299 1.42964 1.44117 1.20873 0.81663 0.89353 1.06902 1.46254 1.02044 1.74655 1.04812 1.19669 0.92431 0.98008 0.79070 1.21377 1.36370 0.91617 1.06918 0.90620 1.24800 0.95284 0.95446 0.97285 1.69897 1.40634 1.19610 1.23595 0.86902 0.79982 0.83362 0.79761 1.19964 1.21206 1.19124 1.17733 0.87047 0.86410 0.85415 1.21023 1.00435 1.20129 0.92130 1.20804 0.93131 0.91586 0.97026 1.20828 0.95590 1.21252 0.96394 1.17918 0.85277 0.87688 0.88462 1.42181 1.03942 1.82506 1.11292 1.66514 1.07222 1.27211 1.29035 0.90573 0.91449 0.91541 0.91550 0.91491 0.85396 0.86758 0.96022 0.93718 0.92665 0.86273 0.85968 0.86508 0.76863 0.76919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.22 10.22 -39.24 -0.40 -5.62 16 4 C 0.44 7.47 8.03 36.00 0.29 7.76 16 5 O -0.49 -10.19 16.18 -18.75 -0.30 -10.50 16 6 C 0.14 2.38 5.85 -5.19 -0.03 2.35 16 7 N -0.57 -12.32 2.06 -176.61 -0.36 -12.68 16 8 C 0.23 5.74 4.29 -5.19 -0.02 5.71 16 9 C -0.52 -14.87 9.94 -34.44 -0.34 -15.21 16 10 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 13 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 14 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 17 C 0.47 10.05 7.37 -155.03 -1.14 8.91 16 18 C -0.31 -5.48 9.27 -39.20 -0.36 -5.85 16 19 C 0.00 0.00 10.16 -39.36 -0.40 -0.40 16 20 C -0.31 -4.97 9.93 -39.20 -0.39 -5.36 16 21 C 0.45 8.19 7.74 -155.02 -1.20 6.99 16 22 N -0.86 -12.33 9.07 31.11 0.28 -12.05 16 23 N -0.57 -12.71 9.10 -11.63 -0.11 -12.82 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.13 2.06 8.07 -51.93 -0.42 1.64 16 30 H 0.11 1.60 5.96 -51.93 -0.31 1.29 16 31 H 0.02 0.54 7.13 -51.93 -0.37 0.17 16 32 H 0.04 1.20 6.72 -51.93 -0.35 0.85 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 34 H 0.12 1.80 6.00 -52.49 -0.32 1.49 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.40 4.25 8.82 -40.82 -0.36 3.89 16 38 H 0.40 5.87 8.95 -40.82 -0.37 5.50 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -35.34 328.17 -7.96 -43.30 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.04 Total: 7.95 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.09 Total: 7.02 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: 0.59 Total: -64.27 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.70 Total: -16.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.34 -7.96 -43.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.404 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds