Wall clock time and date at job start Tue Mar 31 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47411 * 2 1 4 4 C 1.34222 * 117.00044 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99888 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47479 * 180.02562 * 6 4 3 8 8 C 1.46495 * 120.00005 * 270.00483 * 7 6 4 9 9 C 1.50703 * 109.47143 * 269.99577 * 8 7 6 10 10 H 1.07999 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99801 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99821 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00440 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47205 * 89.99654 * 13 11 9 15 15 H 1.48501 * 109.47683 * 209.99952 * 13 11 9 16 16 H 1.48501 * 109.46951 * 330.00240 * 13 11 9 17 17 C 1.38989 * 119.99735 * 90.00090 * 7 6 4 18 18 C 1.39006 * 119.66441 * 5.30239 * 17 7 6 19 19 C 1.38502 * 119.26281 * 180.25611 * 18 17 7 20 20 C 1.38563 * 118.58620 * 359.45305 * 19 18 17 21 21 C 1.38957 * 119.26036 * 0.27815 * 20 19 18 22 22 N 1.38990 * 119.65593 * 180.02562 * 21 20 19 23 23 N 1.32465 * 119.65851 * 185.00280 * 17 7 6 24 24 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47256 * 300.00059 * 1 2 3 26 26 H 1.08994 * 109.47153 * 60.00066 * 1 2 3 27 27 H 1.08997 * 109.47256 * 239.99941 * 2 1 3 28 28 H 1.09007 * 109.47107 * 120.00226 * 2 1 3 29 29 H 1.09004 * 109.46902 * 60.00674 * 6 4 3 30 30 H 1.09000 * 109.47598 * 300.00810 * 6 4 3 31 31 H 1.09002 * 109.47111 * 29.99660 * 8 7 6 32 32 H 1.08999 * 109.47290 * 149.99472 * 8 7 6 33 33 H 0.96996 * 120.00447 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.36640 * 0.02562 * 18 17 7 35 35 H 1.08002 * 120.70965 * 179.73359 * 19 18 17 36 36 H 1.08000 * 120.36479 * 180.25643 * 20 19 18 37 37 H 0.97002 * 120.00348 * 0.02562 * 22 21 20 38 38 H 0.97004 * 120.00035 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3838 2.8607 0.0001 8 6 6.1152 2.8228 1.2689 9 6 6.4404 4.2287 1.7034 10 1 6.1326 5.0666 1.0955 11 6 7.1308 4.4452 2.8770 12 7 7.4141 5.6721 3.2565 13 14 7.6637 2.9959 3.9282 14 1 9.0155 2.5489 3.5061 15 1 7.7011 3.4063 5.3549 16 1 6.6983 1.8803 3.7591 17 6 6.0778 2.8239 -1.2035 18 6 5.3870 2.9713 -2.4008 19 6 6.0862 2.9280 -3.5956 20 6 7.4596 2.7494 -3.5539 21 6 8.0900 2.6141 -2.3230 22 7 9.4673 2.4352 -2.2716 23 7 7.3916 2.6545 -1.1977 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.5845 3.4699 0.8896 30 1 3.5852 3.4691 -0.8904 31 1 5.4999 2.3408 2.0287 32 1 7.0394 2.2598 1.1388 33 1 7.9002 5.8245 4.0820 34 1 4.3166 3.1144 -2.3994 35 1 5.5725 3.0356 -4.5395 36 1 8.0337 2.7154 -4.4681 37 1 9.9836 2.4056 -3.0923 38 1 9.9125 2.3406 -1.4150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:30 Heat of formation + Delta-G solvation = -52.211732 kcal Electronic energy + Delta-G solvation = -21866.293393 eV Core-core repulsion = 18515.559159 eV Total energy + Delta-G solvation = -3350.734234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66529 -40.86298 -38.25341 -37.22625 -35.22261 -34.46742 -33.08028 -32.57312 -30.96763 -29.64597 -27.76234 -24.71250 -24.37124 -23.26443 -22.68085 -21.54305 -19.21164 -18.72716 -18.61634 -18.19202 -17.64963 -17.29377 -16.69748 -16.52759 -16.09232 -15.93984 -15.32074 -15.15964 -14.92006 -14.41986 -14.35893 -13.96522 -13.60785 -13.44507 -13.42611 -13.01297 -12.84836 -12.59684 -12.48366 -12.43847 -12.31135 -11.85081 -11.62557 -11.55073 -11.51310 -10.80884 -10.74551 -10.12653 -9.30962 -8.31066 -8.15249 -6.32960 0.72777 0.80535 1.15978 1.31461 1.33335 1.43334 1.53569 2.22975 2.31472 2.90433 3.03531 3.27226 3.76854 3.88458 4.01066 4.10279 4.11775 4.30275 4.35344 4.37772 4.55613 4.60398 4.70962 4.84933 4.86220 4.95023 5.02918 5.15323 5.19335 5.44370 5.48951 5.58237 5.77757 5.88435 6.26971 6.43902 6.66728 6.69856 6.73295 6.86168 7.29842 7.69727 8.85856 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.007442 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.880940 B = 3761.699091 C = 5767.234038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.446 3.554 5 O -0.534 6.534 6 C 0.136 3.864 7 N -0.586 5.586 8 C 0.247 3.753 9 C -0.520 4.520 10 H 0.036 0.964 11 C 0.020 3.980 12 N -0.942 5.942 13 Si 0.938 3.062 14 H -0.272 1.272 15 H -0.275 1.275 16 H -0.257 1.257 17 C 0.435 3.565 18 C -0.316 4.316 19 C 0.004 3.996 20 C -0.305 4.305 21 C 0.421 3.579 22 N -0.845 5.845 23 N -0.624 5.624 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.021 0.979 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.420 0.580 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 -9.731 -12.863 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.287 3.713 5 O -0.423 6.423 6 C 0.010 3.990 7 N -0.296 5.296 8 C 0.125 3.875 9 C -0.559 4.559 10 H 0.055 0.945 11 C -0.178 4.178 12 N -0.583 5.583 13 Si 0.762 3.238 14 H -0.197 1.197 15 H -0.200 1.200 16 H -0.181 1.181 17 C 0.200 3.800 18 C -0.342 4.342 19 C -0.021 4.021 20 C -0.331 4.331 21 C 0.181 3.819 22 N -0.389 5.389 23 N -0.352 5.352 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.171 0.829 37 H 0.253 0.747 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.713 -10.032 -11.800 17.770 hybrid contribution 0.724 -0.423 0.322 0.898 sum -7.989 -10.455 -11.478 17.461 Atomic orbital electron populations 1.21810 0.89822 1.04373 1.03944 1.23289 0.97407 0.79448 1.02115 1.86513 1.23343 1.33611 1.83753 1.25045 0.80862 0.93843 0.71501 1.90649 1.61373 1.44059 1.46178 1.21087 0.79558 0.89804 1.08569 1.46138 1.03540 1.76123 1.03840 1.19138 0.92126 0.95182 0.81053 1.21509 1.35805 0.92266 1.06291 0.94526 1.25618 0.95372 0.98099 0.98713 1.70027 1.41918 1.21823 1.24485 0.85861 0.79605 0.80067 0.78235 1.19699 1.20020 1.18128 1.18189 0.87397 0.88118 0.86263 1.21313 1.01630 1.19720 0.91572 1.21361 0.93126 0.89637 0.97997 1.21283 0.96244 1.18968 0.96640 1.18413 0.86405 0.88302 0.88750 1.42161 1.02921 1.81687 1.12171 1.66405 1.08368 1.28890 1.31521 0.88213 0.91281 0.90749 0.91502 0.92227 0.85079 0.83652 0.96130 0.95709 0.92377 0.84108 0.81488 0.82895 0.74731 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 10.29 71.98 0.74 -1.29 16 2 C 0.05 1.14 6.19 71.98 0.45 1.59 16 3 O -0.36 -9.80 10.22 -51.34 -0.52 -10.33 16 4 C 0.45 15.09 8.03 71.24 0.57 15.67 16 5 O -0.53 -22.11 16.18 21.97 0.36 -21.75 16 6 C 0.14 4.60 5.85 85.63 0.50 5.10 16 7 N -0.59 -25.85 2.06 -712.66 -1.47 -27.31 16 8 C 0.25 12.76 4.29 85.64 0.37 13.13 16 9 C -0.52 -30.57 9.94 25.60 0.25 -30.32 16 10 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 11 C 0.02 1.19 5.47 84.65 0.46 1.65 16 12 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 13 Si 0.94 45.89 27.47 68.60 1.88 47.77 16 14 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 17 C 0.44 18.69 7.37 133.02 0.98 19.67 16 18 C -0.32 -10.63 9.27 22.52 0.21 -10.42 16 19 C 0.00 0.11 10.16 22.41 0.23 0.34 16 20 C -0.30 -8.80 9.93 22.52 0.22 -8.57 16 21 C 0.42 15.11 7.74 133.00 1.03 16.14 16 22 N -0.84 -23.66 9.07 -55.50 -0.50 -24.16 16 23 N -0.62 -28.09 9.10 -190.70 -1.74 -29.82 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 29 H 0.13 4.27 8.07 -2.39 -0.02 4.25 16 30 H 0.15 3.88 5.96 -2.39 -0.01 3.87 16 31 H 0.02 1.06 7.13 -2.39 -0.02 1.04 16 32 H 0.02 1.37 6.72 -2.39 -0.02 1.36 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.14 3.92 6.00 -2.91 -0.02 3.90 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 36 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.42 8.14 8.82 -92.71 -0.82 7.32 16 38 H 0.40 11.69 8.95 -92.71 -0.83 10.86 16 Total: -1.00 -79.68 328.17 3.71 -75.97 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.61 Total: 25.86 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 6.01 Total: 22.68 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -3.41 Total: -140.19 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.17 Total: -32.08 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -79.68 3.71 -75.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.754 kcal (2) G-P(sol) polarization free energy of solvation -79.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds