Wall clock time and date at job start Tue Mar 31 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46827 * 2 1 4 4 C 1.34226 * 116.99981 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99960 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46793 * 174.70187 * 6 4 3 8 8 C 1.46903 * 110.99530 * 160.68139 * 7 6 4 9 9 C 1.50703 * 109.47138 * 189.99568 * 8 7 6 10 10 H 1.07997 * 119.99652 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00241 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00012 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00157 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46943 * 60.00195 * 13 11 9 15 15 H 1.48498 * 109.47530 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47285 * 300.00751 * 13 11 9 17 17 C 1.39045 * 111.00041 * 284.63123 * 7 6 4 18 18 N 1.32520 * 120.16461 * 304.98975 * 17 7 6 19 19 N 1.28346 * 122.06649 * 179.71829 * 18 17 7 20 20 C 1.31813 * 122.28454 * 0.53934 * 19 18 17 21 21 C 1.38776 * 120.01576 * 359.75882 * 20 19 18 22 22 C 1.38602 * 118.04098 * 359.97438 * 21 20 19 23 23 C 1.50700 * 121.04406 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46981 * 299.99948 * 1 2 3 26 26 H 1.08996 * 109.47098 * 60.00275 * 1 2 3 27 27 H 1.09001 * 109.47415 * 240.00257 * 2 1 3 28 28 H 1.08996 * 109.47098 * 119.99725 * 2 1 3 29 29 H 1.08995 * 109.47236 * 54.70476 * 6 4 3 30 30 H 1.09003 * 109.47172 * 294.69833 * 6 4 3 31 31 H 1.08995 * 109.47551 * 310.00270 * 8 7 6 32 32 H 1.09004 * 109.47048 * 70.00484 * 8 7 6 33 33 H 0.96993 * 119.99928 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.99450 * 179.73084 * 20 19 18 35 35 H 1.08004 * 120.97831 * 179.97438 * 21 20 19 36 36 H 1.09007 * 109.47122 * 275.25245 * 23 22 21 37 37 H 1.08996 * 109.47319 * 35.25070 * 23 22 21 38 38 H 1.08997 * 109.47085 * 155.25509 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 0.0000 7 7 5.3822 2.8628 0.1272 8 6 6.0138 4.1122 -0.3182 9 6 7.5055 3.9170 -0.4073 10 1 7.9407 2.9604 -0.1584 11 6 8.3145 4.9592 -0.8075 12 7 7.7845 6.1239 -1.1111 13 14 10.1634 4.7170 -0.9186 14 1 10.4634 3.6359 -1.8915 15 1 10.8020 5.9799 -1.3686 16 1 10.6947 4.3426 0.4166 17 6 5.7539 2.5538 1.4309 18 7 5.3276 3.3003 2.4395 19 7 5.6437 3.0453 3.6570 20 6 6.4204 2.0322 3.9854 21 6 6.9227 1.1945 2.9996 22 6 6.5814 1.4601 1.6828 23 6 7.0884 0.5939 0.5587 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5112 3.4997 0.8393 30 1 3.6622 3.4380 -0.9332 31 1 5.6242 4.3871 -1.2983 32 1 5.7933 4.9055 0.3961 33 1 8.3537 6.8572 -1.3923 34 1 6.6663 1.8543 5.0219 35 1 7.5607 0.3602 3.2511 36 1 8.0798 0.9326 0.2577 37 1 7.1448 -0.4414 0.8948 38 1 6.4075 0.6640 -0.2895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:36 Heat of formation + Delta-G solvation = -16.234724 kcal Electronic energy + Delta-G solvation = -22379.326201 eV Core-core repulsion = 19030.152047 eV Total energy + Delta-G solvation = -3349.174154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77752 -39.99812 -37.13578 -35.94704 -33.73171 -32.74877 -31.84948 -30.98769 -28.52745 -27.63714 -25.93497 -23.87357 -23.07818 -22.28732 -21.42111 -20.54544 -17.66346 -17.22057 -16.83259 -16.38947 -15.94273 -15.68320 -15.21628 -15.08565 -14.40658 -14.18239 -13.57549 -13.41541 -13.20768 -12.83410 -12.50590 -12.37594 -12.36479 -12.10955 -11.75433 -11.68884 -11.59078 -11.49139 -10.92805 -10.80574 -10.49042 -10.45874 -10.20351 -10.04665 -9.57996 -9.40473 -9.30737 -8.83440 -8.53915 -7.74701 -6.13417 -4.15745 1.36939 1.49592 2.52559 2.75893 3.27492 3.32019 3.33896 4.08161 4.19123 4.40099 4.79559 4.85027 4.85789 5.00217 5.04119 5.15290 5.19218 5.23901 5.38128 5.53751 5.57957 5.61905 5.67430 5.78464 5.85593 5.91082 6.24737 6.29542 6.40022 6.56011 6.66558 6.87224 7.00881 7.19826 7.50689 7.83814 7.91865 8.08137 8.25027 8.88552 9.28013 9.48243 10.97402 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.005916 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.232617 B = 4731.937664 C = 5432.358828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.488 6.488 6 C 0.060 3.940 7 N -0.469 5.469 8 C 0.199 3.801 9 C -0.518 4.518 10 H 0.066 0.934 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.280 3.720 18 N -0.278 5.278 19 N -0.250 5.250 20 C 0.023 3.977 21 C -0.140 4.140 22 C -0.031 4.031 23 C -0.103 4.103 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.163 0.837 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 -11.916 3.754 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.300 3.700 5 O -0.374 6.374 6 C -0.069 4.069 7 N -0.195 5.195 8 C 0.077 3.923 9 C -0.556 4.556 10 H 0.085 0.915 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.203 1.203 17 C 0.044 3.956 18 N -0.123 5.123 19 N -0.092 5.092 20 C -0.142 4.142 21 C -0.169 4.169 22 C -0.044 4.044 23 C -0.160 4.160 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.180 0.820 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.304 -11.085 3.871 14.981 hybrid contribution 1.758 -0.767 -0.018 1.918 sum -7.546 -11.852 3.853 14.569 Atomic orbital electron populations 1.21793 0.92909 1.02653 1.03493 1.22926 0.95089 0.80786 1.02325 1.86506 1.25129 1.31884 1.84618 1.23981 0.80121 0.93287 0.72566 1.90605 1.60002 1.42757 1.44022 1.21685 0.89595 0.89895 1.05702 1.59974 1.04568 1.40297 1.14691 1.20009 0.94659 0.81555 0.96091 1.21066 0.90435 0.98122 1.46008 0.91544 1.24918 0.99013 0.94945 0.95173 1.69926 1.35754 1.02201 1.45189 0.86564 0.84864 0.77575 0.78530 1.19909 1.21116 1.20328 1.21152 0.92926 0.90724 0.90799 1.73009 1.20677 1.23020 0.95556 1.72712 1.10678 1.14962 1.10818 1.24051 0.95856 0.93328 1.00970 1.22199 1.00671 1.01211 0.92790 1.20914 0.93500 0.94497 0.95486 1.20736 1.02328 0.95726 0.97199 0.90522 0.91572 0.91465 0.91330 0.91681 0.89269 0.85971 0.93712 0.96712 0.92605 0.82018 0.84073 0.90530 0.92596 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.74 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.41 10.22 -39.25 -0.40 -5.81 16 4 C 0.46 7.90 7.74 36.01 0.28 8.18 16 5 O -0.49 -9.20 13.71 -18.75 -0.26 -9.46 16 6 C 0.06 1.08 5.55 -4.97 -0.03 1.06 16 7 N -0.47 -10.06 3.06 -175.77 -0.54 -10.60 16 8 C 0.20 4.99 4.67 -4.97 -0.02 4.96 16 9 C -0.52 -14.03 8.72 -34.44 -0.30 -14.33 16 10 H 0.07 1.76 5.53 -52.49 -0.29 1.47 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 13 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.28 6.01 3.90 -154.76 -0.60 5.41 16 18 N -0.28 -6.17 10.40 31.23 0.32 -5.84 16 19 N -0.25 -5.06 11.49 30.56 0.35 -4.71 16 20 C 0.02 0.38 11.31 -17.36 -0.20 0.18 16 21 C -0.14 -2.26 9.94 -39.25 -0.39 -2.65 16 22 C -0.03 -0.60 5.27 -104.04 -0.55 -1.15 16 23 C -0.10 -1.81 8.90 36.01 0.32 -1.49 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.09 1.61 7.33 -51.93 -0.38 1.23 16 30 H 0.12 1.96 7.74 -51.93 -0.40 1.56 16 31 H 0.04 1.14 7.83 -51.93 -0.41 0.74 16 32 H 0.01 0.41 7.91 -51.93 -0.41 0.00 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.08 1.36 7.25 -51.93 -0.38 0.99 16 37 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 38 H 0.10 1.96 5.93 -51.93 -0.31 1.65 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -32.12 323.73 -5.99 -38.11 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.09 Total: 0.36 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.98 Total: 1.85 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.87 Total: -46.23 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.66 Total: -15.27 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.12 -5.99 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.877 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds