Wall clock time and date at job start Tue Mar 31 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46827 * 2 1 4 4 C 1.34226 * 116.99981 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99960 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46793 * 174.70187 * 6 4 3 8 8 C 1.46903 * 110.99530 * 160.68139 * 7 6 4 9 9 C 1.50703 * 109.47138 * 189.99568 * 8 7 6 10 10 H 1.07997 * 119.99652 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00241 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00012 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00157 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46943 * 60.00195 * 13 11 9 15 15 H 1.48498 * 109.47530 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47285 * 300.00751 * 13 11 9 17 17 C 1.39045 * 111.00041 * 284.63123 * 7 6 4 18 18 N 1.32520 * 120.16461 * 304.98975 * 17 7 6 19 19 N 1.28346 * 122.06649 * 179.71829 * 18 17 7 20 20 C 1.31813 * 122.28454 * 0.53934 * 19 18 17 21 21 C 1.38776 * 120.01576 * 359.75882 * 20 19 18 22 22 C 1.38602 * 118.04098 * 359.97438 * 21 20 19 23 23 C 1.50700 * 121.04406 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46981 * 299.99948 * 1 2 3 26 26 H 1.08996 * 109.47098 * 60.00275 * 1 2 3 27 27 H 1.09001 * 109.47415 * 240.00257 * 2 1 3 28 28 H 1.08996 * 109.47098 * 119.99725 * 2 1 3 29 29 H 1.08995 * 109.47236 * 54.70476 * 6 4 3 30 30 H 1.09003 * 109.47172 * 294.69833 * 6 4 3 31 31 H 1.08995 * 109.47551 * 310.00270 * 8 7 6 32 32 H 1.09004 * 109.47048 * 70.00484 * 8 7 6 33 33 H 0.96993 * 119.99928 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.99450 * 179.73084 * 20 19 18 35 35 H 1.08004 * 120.97831 * 179.97438 * 21 20 19 36 36 H 1.09007 * 109.47122 * 275.25245 * 23 22 21 37 37 H 1.08996 * 109.47319 * 35.25070 * 23 22 21 38 38 H 1.08997 * 109.47085 * 155.25509 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 0.0000 7 7 5.3822 2.8628 0.1272 8 6 6.0138 4.1122 -0.3182 9 6 7.5055 3.9170 -0.4073 10 1 7.9407 2.9604 -0.1584 11 6 8.3145 4.9592 -0.8075 12 7 7.7845 6.1239 -1.1111 13 14 10.1634 4.7170 -0.9186 14 1 10.4634 3.6359 -1.8915 15 1 10.8020 5.9799 -1.3686 16 1 10.6947 4.3426 0.4166 17 6 5.7539 2.5538 1.4309 18 7 5.3276 3.3003 2.4395 19 7 5.6437 3.0453 3.6570 20 6 6.4204 2.0322 3.9854 21 6 6.9227 1.1945 2.9996 22 6 6.5814 1.4601 1.6828 23 6 7.0884 0.5939 0.5587 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5112 3.4997 0.8393 30 1 3.6622 3.4380 -0.9332 31 1 5.6242 4.3871 -1.2983 32 1 5.7933 4.9055 0.3961 33 1 8.3537 6.8572 -1.3923 34 1 6.6663 1.8543 5.0219 35 1 7.5607 0.3602 3.2511 36 1 8.0798 0.9326 0.2577 37 1 7.1448 -0.4414 0.8948 38 1 6.4075 0.6640 -0.2895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:35 Heat of formation + Delta-G solvation = -36.618370 kcal Electronic energy + Delta-G solvation = -22380.210102 eV Core-core repulsion = 19030.152047 eV Total energy + Delta-G solvation = -3350.058055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22999 -41.32138 -38.61895 -37.33555 -35.14392 -34.79573 -32.84442 -32.36562 -30.27611 -29.05152 -27.61060 -25.48643 -24.24685 -23.68950 -22.95888 -21.92206 -19.21862 -18.62617 -18.32117 -17.96114 -17.48775 -16.98438 -16.80227 -16.54395 -16.13266 -15.39940 -15.01666 -14.85094 -14.55611 -14.21574 -13.86993 -13.72122 -13.63190 -13.52050 -13.36089 -13.12724 -12.81856 -12.79479 -12.65547 -12.51160 -12.12307 -11.90739 -11.64605 -11.52211 -11.30202 -10.96628 -10.80716 -10.61368 -10.32533 -9.42777 -8.23833 -6.32941 -0.03318 0.07779 1.15791 1.38370 1.41167 1.47391 1.52471 2.36720 2.62579 2.76351 3.11404 3.40894 3.71789 3.74694 3.82531 3.99139 4.08982 4.10567 4.12261 4.22487 4.33492 4.35001 4.64570 4.79768 4.87004 4.88725 4.91716 4.96873 5.06150 5.11564 5.22925 5.33697 5.40127 5.53136 5.62587 5.86130 6.10470 6.29308 6.76315 6.80050 7.35222 7.81997 8.87512 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.005916 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.232617 B = 4731.937664 C = 5432.358828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.364 6.364 4 C 0.467 3.533 5 O -0.505 6.505 6 C 0.056 3.944 7 N -0.468 5.468 8 C 0.216 3.784 9 C -0.527 4.527 10 H 0.071 0.929 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.962 3.038 14 H -0.261 1.261 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.256 3.744 18 N -0.314 5.314 19 N -0.282 5.282 20 C 0.030 3.970 21 C -0.123 4.123 22 C -0.056 4.056 23 C -0.095 4.095 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.031 0.969 32 H -0.022 1.022 33 H 0.265 0.735 34 H 0.211 0.789 35 H 0.191 0.809 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 -14.334 4.788 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.392 6.392 6 C -0.073 4.073 7 N -0.193 5.193 8 C 0.093 3.907 9 C -0.565 4.565 10 H 0.089 0.911 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.786 3.214 14 H -0.185 1.185 15 H -0.209 1.209 16 H -0.199 1.199 17 C 0.019 3.981 18 N -0.158 5.158 19 N -0.123 5.123 20 C -0.135 4.135 21 C -0.152 4.152 22 C -0.068 4.068 23 C -0.152 4.152 24 H 0.122 0.878 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.153 0.847 31 H 0.049 0.951 32 H -0.004 1.004 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.208 0.792 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.576 -13.518 4.910 16.745 hybrid contribution 1.432 -0.102 -0.232 1.454 sum -7.144 -13.620 4.679 16.076 Atomic orbital electron populations 1.21824 0.90175 1.04473 1.03662 1.23298 0.97180 0.78992 1.02449 1.86494 1.23493 1.34128 1.84037 1.23573 0.80873 0.92363 0.72262 1.90585 1.60623 1.43027 1.45002 1.21714 0.88170 0.91234 1.06155 1.59857 1.06086 1.37814 1.15577 1.19577 0.94444 0.82402 0.94312 1.21401 0.91485 0.98275 1.45382 0.91099 1.25796 1.03708 0.94627 0.94863 1.70057 1.37391 1.03051 1.46338 0.85545 0.79217 0.77831 0.78784 1.18525 1.20850 1.19905 1.21333 0.94403 0.91993 0.90345 1.72909 1.22110 1.24349 0.96446 1.72612 1.12549 1.17063 1.10097 1.24838 0.93696 0.91539 1.03426 1.22754 0.99588 1.01753 0.91098 1.21273 0.93626 0.94388 0.97540 1.20662 1.01109 0.97348 0.96083 0.87818 0.91593 0.91101 0.90981 0.91841 0.89767 0.84745 0.95114 1.00369 0.92605 0.77211 0.79159 0.91050 0.89276 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.29 71.98 0.74 -1.43 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -10.74 10.22 -51.38 -0.53 -11.27 16 4 C 0.47 16.27 7.74 71.24 0.55 16.82 16 5 O -0.51 -19.04 13.71 21.97 0.30 -18.74 16 6 C 0.06 2.10 5.55 85.56 0.48 2.57 16 7 N -0.47 -20.75 3.06 -710.02 -2.17 -22.92 16 8 C 0.22 11.36 4.67 85.56 0.40 11.76 16 9 C -0.53 -29.14 8.72 25.60 0.22 -28.91 16 10 H 0.07 3.77 5.53 -2.91 -0.02 3.76 16 11 C 0.01 0.50 5.46 84.65 0.46 0.97 16 12 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 13 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.26 11.12 3.90 133.09 0.52 11.64 16 18 N -0.31 -14.25 10.40 -55.11 -0.57 -14.82 16 19 N -0.28 -11.28 11.49 -57.22 -0.66 -11.94 16 20 C 0.03 0.90 11.31 84.82 0.96 1.86 16 21 C -0.12 -3.55 9.94 22.49 0.22 -3.33 16 22 C -0.06 -2.08 5.27 -19.49 -0.10 -2.18 16 23 C -0.10 -3.18 8.90 71.24 0.63 -2.55 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.08 3.24 7.33 -2.39 -0.02 3.22 16 30 H 0.13 4.55 7.74 -2.39 -0.02 4.53 16 31 H 0.03 1.67 7.83 -2.39 -0.02 1.65 16 32 H -0.02 -1.27 7.91 -2.38 -0.02 -1.29 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.21 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.07 2.43 7.25 -2.38 -0.02 2.41 16 37 H 0.09 2.31 8.13 -2.39 -0.02 2.29 16 38 H 0.08 2.97 5.93 -2.39 -0.01 2.96 16 Total: -1.00 -72.00 323.73 5.28 -66.72 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.07 Total: 13.22 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.53 Total: 8.87 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.12 Total: -104.51 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.22 Total: -30.01 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.00 5.28 -66.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.101 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds