Wall clock time and date at job start Tue Mar 31 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.46851 * 2 1 4 4 C 1.34237 * 116.99468 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00164 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99395 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47473 * 59.99895 * 6 4 3 8 8 C 1.53003 * 109.47193 * 299.99579 * 6 4 3 9 9 C 1.53007 * 109.46940 * 179.97438 * 6 4 3 10 10 N 1.46493 * 109.47346 * 185.00051 * 9 6 4 11 11 C 1.38825 * 119.99911 * 179.97438 * 10 9 6 12 12 C 1.39955 * 119.97252 * 359.97438 * 11 10 9 13 13 N 1.32131 * 120.32069 * 180.02562 * 12 11 10 14 14 C 1.31929 * 120.26877 * 359.68527 * 13 12 11 15 15 C 1.40684 * 119.93396 * 0.59496 * 14 13 12 16 16 C 1.41275 * 120.15520 * 179.70690 * 15 14 13 17 17 H 1.07997 * 120.00098 * 353.48236 * 16 15 14 18 18 C 1.40057 * 119.99814 * 173.75461 * 16 15 14 19 19 N 1.30732 * 119.99634 * 5.95328 * 18 16 15 20 20 Si 1.86797 * 119.99833 * 185.95838 * 18 16 15 21 21 H 1.48501 * 109.46997 * 89.99944 * 20 18 16 22 22 H 1.48496 * 109.46945 * 209.99701 * 20 18 16 23 23 H 1.48495 * 109.47119 * 330.00094 * 20 18 16 24 24 N 1.32240 * 119.96654 * 179.97438 * 11 10 9 25 25 H 1.08993 * 109.47275 * 60.00154 * 1 2 3 26 26 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47001 * 299.99584 * 1 2 3 28 28 H 1.09006 * 109.46750 * 239.99762 * 2 1 3 29 29 H 1.09006 * 109.46860 * 120.00276 * 2 1 3 30 30 H 1.08999 * 109.46706 * 60.00908 * 8 6 4 31 31 H 1.09006 * 109.46507 * 180.02562 * 8 6 4 32 32 H 1.08999 * 109.47169 * 300.00502 * 8 6 4 33 33 H 1.08998 * 109.47209 * 64.99294 * 9 6 4 34 34 H 1.09003 * 109.46756 * 305.00482 * 9 6 4 35 35 H 0.97000 * 119.99739 * 359.97438 * 10 9 6 36 36 H 1.08005 * 119.83958 * 0.02562 * 12 11 10 37 37 H 1.07998 * 120.03226 * 180.30222 * 14 13 12 38 38 H 0.97007 * 119.99584 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 0.8904 8 6 3.4486 3.6850 -1.2486 9 6 5.4487 2.8573 -0.0001 10 7 6.0084 4.2057 0.1208 11 6 7.3846 4.3866 0.1434 12 6 8.2368 3.2802 0.0512 13 7 9.5477 3.4444 0.0726 14 6 10.0649 4.6537 0.1748 15 6 9.2185 5.7731 0.2742 16 6 9.7673 7.0697 0.3901 17 1 10.8333 7.1963 0.5085 18 6 8.9283 8.1907 0.3571 19 7 7.6304 8.0354 0.3364 20 14 9.6639 9.9077 0.3425 21 1 9.8838 10.3401 -1.0610 22 1 8.7321 10.8511 1.0109 23 1 10.9607 9.8968 1.0660 24 7 7.8891 5.6041 0.2521 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.3601 3.7421 -1.2480 31 1 3.8656 4.6922 -1.2483 32 1 3.7841 3.1534 -2.1390 33 1 5.7887 2.4049 -0.9316 34 1 5.7807 2.2492 0.8414 35 1 5.4173 4.9722 0.1850 36 1 7.8209 2.2874 -0.0378 37 1 11.1369 4.7839 0.1870 38 1 7.0493 8.8118 0.3140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160891211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:21 Heat of formation + Delta-G solvation = -51.136618 kcal Electronic energy + Delta-G solvation = -21078.230153 eV Core-core repulsion = 17727.542539 eV Total energy + Delta-G solvation = -3350.687614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72635 -38.90042 -37.15849 -36.00984 -33.94728 -33.13699 -31.87435 -31.25376 -28.93688 -26.16454 -25.80997 -24.54706 -22.72994 -22.33556 -21.06321 -20.20085 -17.91651 -17.36483 -16.97542 -16.77952 -16.06343 -15.18505 -15.12239 -14.81201 -14.71885 -14.07156 -13.82280 -13.69443 -13.19218 -13.07933 -12.91613 -12.59720 -12.35095 -12.16599 -11.85050 -11.54849 -11.49550 -11.38249 -11.30033 -10.98877 -10.75183 -10.68184 -10.43193 -10.33913 -9.85164 -9.62189 -9.36423 -8.34173 -7.37479 -6.72124 -6.43865 -4.64051 2.09298 2.41729 2.71794 3.04708 3.08160 3.12808 3.29868 3.88197 4.05933 4.45459 4.63608 4.68490 4.72572 4.76567 4.82019 4.98284 5.11161 5.40174 5.46830 5.64536 5.65404 5.68810 5.84758 5.99342 6.02751 6.10137 6.15431 6.28321 6.35008 6.54357 6.81300 7.05060 7.14972 7.59136 7.63908 7.95587 8.05025 8.42839 8.57107 8.86327 9.44213 10.01291 10.19858 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.003429 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.210625 B = 8162.777986 C = 8998.297653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.502 6.502 6 C -0.093 4.093 7 H 0.115 0.885 8 C -0.144 4.144 9 C 0.155 3.845 10 N -0.731 5.731 11 C 0.374 3.626 12 C -0.167 4.167 13 N -0.407 5.407 14 C -0.107 4.107 15 C 0.245 3.755 16 C -0.417 4.417 17 H 0.090 0.910 18 C 0.068 3.932 19 N -0.711 5.711 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.260 1.260 24 N -0.508 5.508 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.568 -6.825 -1.106 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.314 3.686 5 O -0.389 6.389 6 C -0.112 4.112 7 H 0.133 0.867 8 C -0.201 4.201 9 C 0.029 3.971 10 N -0.370 5.370 11 C 0.131 3.869 12 C -0.329 4.329 13 N -0.119 5.119 14 C -0.277 4.277 15 C 0.117 3.883 16 C -0.450 4.450 17 H 0.108 0.892 18 C -0.158 4.158 19 N -0.332 5.332 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.184 1.184 24 N -0.234 5.234 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.602 -7.283 -1.124 16.356 hybrid contribution -0.025 0.843 0.047 0.845 sum -14.627 -6.440 -1.077 16.018 Atomic orbital electron populations 1.21804 0.92632 1.02925 1.03557 1.23034 0.95335 0.80318 1.02697 1.86501 1.24543 1.32283 1.84090 1.23540 0.80523 0.92371 0.72145 1.90695 1.60308 1.43074 1.44797 1.21201 0.96655 0.90300 1.03092 0.86683 1.21788 1.01798 1.01263 0.95257 1.20883 0.88415 0.85426 1.02393 1.43971 1.03459 1.06281 1.83252 1.19430 0.84595 0.92211 0.90708 1.21982 0.89724 0.96832 1.24346 1.67519 1.12777 1.25759 1.05833 1.22920 0.99254 0.88937 1.16571 1.19091 0.87108 0.93813 0.88260 1.19618 0.95102 0.89085 1.41160 0.89171 1.26126 0.94682 1.01540 0.93469 1.70114 1.03732 1.31534 1.27799 0.86266 0.80059 0.80823 0.79354 1.19323 1.20157 1.18376 1.69016 1.13119 1.17577 1.23705 0.91449 0.90283 0.91453 0.91187 0.91184 0.91285 0.90188 0.91900 0.91756 0.91675 0.76842 0.86119 0.85260 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.00 10.12 -39.28 -0.40 -4.40 16 4 C 0.47 6.13 7.26 36.01 0.26 6.39 16 5 O -0.50 -7.91 15.67 -18.74 -0.29 -8.20 16 6 C -0.09 -1.14 2.86 -91.77 -0.26 -1.40 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 8 C -0.14 -1.56 9.00 37.16 0.33 -1.23 16 9 C 0.15 2.45 3.64 -4.04 -0.01 2.44 16 10 N -0.73 -14.02 5.45 -60.28 -0.33 -14.35 16 11 C 0.37 9.12 7.66 -155.02 -1.19 7.93 16 12 C -0.17 -4.14 10.50 -16.78 -0.18 -4.31 16 13 N -0.41 -10.67 10.47 -12.11 -0.13 -10.80 16 14 C -0.11 -2.81 10.97 -16.59 -0.18 -2.99 16 15 C 0.25 6.77 6.54 -84.83 -0.55 6.22 16 16 C -0.42 -10.90 9.15 -37.75 -0.35 -11.25 16 17 H 0.09 2.18 7.85 -52.49 -0.41 1.76 16 18 C 0.07 1.68 5.49 -17.34 -0.10 1.58 16 19 N -0.71 -18.13 11.51 55.55 0.64 -17.49 16 20 Si 0.91 17.97 29.56 -169.99 -5.03 12.95 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 N -0.51 -13.83 8.10 -10.14 -0.08 -13.91 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.08 0.92 7.18 -51.93 -0.37 0.55 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 34 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 35 H 0.40 7.22 7.78 -40.82 -0.32 6.91 16 36 H 0.12 2.73 6.70 -52.48 -0.35 2.37 16 37 H 0.13 3.09 8.06 -52.49 -0.42 2.67 16 38 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -31.43 328.38 -7.48 -38.92 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.21 Total: 8.74 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.61 Total: 3.59 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.10 Total: -56.55 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.69 Total: -12.60 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.43 -7.48 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160891211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.221 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds