Wall clock time and date at job start Tue Mar 31 2020 01:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.46851 * 2 1 4 4 C 1.34237 * 116.99468 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00164 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99395 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47473 * 59.99895 * 6 4 3 8 8 C 1.53003 * 109.47193 * 299.99579 * 6 4 3 9 9 C 1.53007 * 109.46940 * 179.97438 * 6 4 3 10 10 N 1.46493 * 109.47346 * 185.00051 * 9 6 4 11 11 C 1.38825 * 119.99911 * 179.97438 * 10 9 6 12 12 C 1.39955 * 119.97252 * 359.97438 * 11 10 9 13 13 N 1.32131 * 120.32069 * 180.02562 * 12 11 10 14 14 C 1.31929 * 120.26877 * 359.68527 * 13 12 11 15 15 C 1.40684 * 119.93396 * 0.59496 * 14 13 12 16 16 C 1.41275 * 120.15520 * 179.70690 * 15 14 13 17 17 H 1.07997 * 120.00098 * 353.48236 * 16 15 14 18 18 C 1.40057 * 119.99814 * 173.75461 * 16 15 14 19 19 N 1.30732 * 119.99634 * 5.95328 * 18 16 15 20 20 Si 1.86797 * 119.99833 * 185.95838 * 18 16 15 21 21 H 1.48501 * 109.46997 * 89.99944 * 20 18 16 22 22 H 1.48496 * 109.46945 * 209.99701 * 20 18 16 23 23 H 1.48495 * 109.47119 * 330.00094 * 20 18 16 24 24 N 1.32240 * 119.96654 * 179.97438 * 11 10 9 25 25 H 1.08993 * 109.47275 * 60.00154 * 1 2 3 26 26 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47001 * 299.99584 * 1 2 3 28 28 H 1.09006 * 109.46750 * 239.99762 * 2 1 3 29 29 H 1.09006 * 109.46860 * 120.00276 * 2 1 3 30 30 H 1.08999 * 109.46706 * 60.00908 * 8 6 4 31 31 H 1.09006 * 109.46507 * 180.02562 * 8 6 4 32 32 H 1.08999 * 109.47169 * 300.00502 * 8 6 4 33 33 H 1.08998 * 109.47209 * 64.99294 * 9 6 4 34 34 H 1.09003 * 109.46756 * 305.00482 * 9 6 4 35 35 H 0.97000 * 119.99739 * 359.97438 * 10 9 6 36 36 H 1.08005 * 119.83958 * 0.02562 * 12 11 10 37 37 H 1.07998 * 120.03226 * 180.30222 * 14 13 12 38 38 H 0.97007 * 119.99584 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 0.8904 8 6 3.4486 3.6850 -1.2486 9 6 5.4487 2.8573 -0.0001 10 7 6.0084 4.2057 0.1208 11 6 7.3846 4.3866 0.1434 12 6 8.2368 3.2802 0.0512 13 7 9.5477 3.4444 0.0726 14 6 10.0649 4.6537 0.1748 15 6 9.2185 5.7731 0.2742 16 6 9.7673 7.0697 0.3901 17 1 10.8333 7.1963 0.5085 18 6 8.9283 8.1907 0.3571 19 7 7.6304 8.0354 0.3364 20 14 9.6639 9.9077 0.3425 21 1 9.8838 10.3401 -1.0610 22 1 8.7321 10.8511 1.0109 23 1 10.9607 9.8968 1.0660 24 7 7.8891 5.6041 0.2521 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.3601 3.7421 -1.2480 31 1 3.8656 4.6922 -1.2483 32 1 3.7841 3.1534 -2.1390 33 1 5.7887 2.4049 -0.9316 34 1 5.7807 2.2492 0.8414 35 1 5.4173 4.9722 0.1850 36 1 7.8209 2.2874 -0.0378 37 1 11.1369 4.7839 0.1870 38 1 7.0493 8.8118 0.3140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160891211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:20 Heat of formation + Delta-G solvation = -70.731748 kcal Electronic energy + Delta-G solvation = -21079.079861 eV Core-core repulsion = 17727.542539 eV Total energy + Delta-G solvation = -3351.537322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75719 -40.78710 -38.27092 -37.32590 -35.82375 -34.60862 -33.24165 -32.44098 -30.69578 -27.75453 -27.34970 -25.57765 -24.30859 -23.59905 -22.75220 -21.33806 -19.42444 -18.82029 -18.46184 -17.79100 -17.36530 -17.00851 -16.68669 -16.37052 -16.12046 -15.40695 -15.19303 -14.85670 -14.61728 -14.46720 -13.97449 -13.58956 -13.35522 -13.24334 -13.18897 -12.99486 -12.93507 -12.60896 -12.53318 -12.51550 -12.13094 -11.98196 -11.73567 -11.54275 -11.46304 -11.37894 -11.34829 -10.23213 -9.32673 -8.52278 -8.32404 -6.62684 0.83925 1.06406 1.25393 1.44868 1.45545 1.58060 1.59471 2.23326 2.56481 2.84473 3.38506 3.72718 3.77951 3.91774 4.00987 4.07999 4.12706 4.21818 4.35214 4.43695 4.53000 4.60760 4.70855 4.80466 4.84288 4.88565 4.93173 4.97423 5.12744 5.16220 5.21755 5.22619 5.41266 5.70194 6.10920 6.17906 6.61818 6.65526 6.68810 6.99662 7.46254 8.06624 8.36488 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.003429 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.210625 B = 8162.777986 C = 8998.297653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.478 3.522 5 O -0.535 6.535 6 C -0.084 4.084 7 H 0.135 0.865 8 C -0.139 4.139 9 C 0.156 3.844 10 N -0.715 5.715 11 C 0.370 3.630 12 C -0.181 4.181 13 N -0.418 5.418 14 C -0.132 4.132 15 C 0.214 3.786 16 C -0.438 4.438 17 H 0.101 0.899 18 C 0.023 3.977 19 N -0.739 5.739 20 Si 0.994 3.006 21 H -0.264 1.264 22 H -0.267 1.267 23 H -0.253 1.253 24 N -0.535 5.535 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.402 0.598 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -5.794 -1.134 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.322 3.678 5 O -0.424 6.424 6 C -0.103 4.103 7 H 0.153 0.847 8 C -0.196 4.196 9 C 0.031 3.969 10 N -0.353 5.353 11 C 0.125 3.875 12 C -0.343 4.343 13 N -0.130 5.130 14 C -0.301 4.301 15 C 0.087 3.913 16 C -0.471 4.471 17 H 0.119 0.881 18 C -0.200 4.200 19 N -0.360 5.360 20 Si 0.814 3.186 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.177 1.177 24 N -0.263 5.263 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.146 -6.278 -1.152 17.362 hybrid contribution 0.318 0.437 0.057 0.543 sum -15.828 -5.841 -1.095 16.907 Atomic orbital electron populations 1.21823 0.90199 1.04393 1.03826 1.23341 0.97208 0.79099 1.02630 1.86496 1.23214 1.33795 1.83466 1.23543 0.80991 0.92016 0.71254 1.90689 1.61157 1.44082 1.46521 1.21089 0.93805 0.90589 1.04806 0.84740 1.21769 1.03216 1.00423 0.94170 1.20930 0.91058 0.83350 1.01558 1.43994 1.01656 1.07914 1.81707 1.19701 0.86552 0.91524 0.89752 1.22292 0.89611 0.97803 1.24596 1.67496 1.13609 1.25881 1.06011 1.23099 0.99924 0.88923 1.18125 1.19537 0.87801 0.94889 0.89093 1.20054 0.96100 0.89549 1.41357 0.88102 1.27084 0.94927 1.05586 0.92449 1.70176 1.05157 1.33472 1.27203 0.85024 0.79331 0.74786 0.79494 1.18836 1.19126 1.17689 1.69042 1.13235 1.18730 1.25278 0.91103 0.88228 0.91206 0.91289 0.91365 0.88995 0.90745 0.92331 0.92477 0.92584 0.76139 0.84474 0.83985 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.35 -7.31 10.12 -51.49 -0.52 -7.83 16 4 C 0.48 11.89 7.26 71.24 0.52 12.40 16 5 O -0.54 -16.69 15.67 21.98 0.34 -16.35 16 6 C -0.08 -1.93 2.86 -11.54 -0.03 -1.96 16 7 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 8 C -0.14 -2.76 9.00 71.98 0.65 -2.12 16 9 C 0.16 4.89 3.64 86.38 0.31 5.20 16 10 N -0.72 -27.30 5.45 -344.63 -1.88 -29.18 16 11 C 0.37 18.29 7.66 133.37 1.02 19.31 16 12 C -0.18 -9.09 10.50 85.06 0.89 -8.19 16 13 N -0.42 -22.35 10.47 -192.23 -2.01 -24.37 16 14 C -0.13 -7.09 10.97 85.28 0.94 -6.15 16 15 C 0.21 12.08 6.54 40.15 0.26 12.34 16 16 C -0.44 -23.09 9.15 23.46 0.21 -22.87 16 17 H 0.10 4.88 7.85 -2.91 -0.02 4.86 16 18 C 0.02 1.13 5.49 85.30 0.47 1.60 16 19 N -0.74 -37.50 11.51 21.84 0.25 -37.25 16 20 Si 0.99 35.96 29.56 68.60 2.03 37.99 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 22 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 23 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 24 N -0.54 -29.64 8.10 -186.00 -1.51 -31.15 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 31 H 0.07 1.60 7.18 -2.38 -0.02 1.58 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.90 7.93 -2.39 -0.02 1.88 16 34 H 0.06 1.89 7.75 -2.39 -0.02 1.87 16 35 H 0.40 14.44 7.78 -92.71 -0.72 13.72 16 36 H 0.14 6.26 6.70 -2.91 -0.02 6.24 16 37 H 0.14 6.98 8.06 -2.91 -0.02 6.95 16 38 H 0.28 12.81 8.29 -92.70 -0.77 12.04 16 Total: -1.00 -68.14 328.38 3.49 -64.65 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.36 Total: 33.37 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.43 Total: 10.12 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.15 Total: -121.94 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.18 Total: -24.18 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -68.14 3.49 -64.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160891211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.084 kcal (2) G-P(sol) polarization free energy of solvation -68.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds