Wall clock time and date at job start Tue Mar 31 2020 01:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47535 * 2 1 4 4 C 1.34226 * 117.00202 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00311 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99653 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47346 * 299.99680 * 6 4 3 8 8 C 1.53000 * 109.47191 * 60.00312 * 6 4 3 9 9 C 1.53008 * 109.46837 * 180.02562 * 6 4 3 10 10 N 1.46497 * 109.46911 * 175.00289 * 9 6 4 11 11 C 1.38832 * 119.99953 * 179.97438 * 10 9 6 12 12 C 1.39970 * 119.96673 * 0.02562 * 11 10 9 13 13 N 1.32124 * 120.31200 * 179.97438 * 12 11 10 14 14 C 1.31927 * 120.27724 * 359.97438 * 13 12 11 15 15 C 1.40680 * 119.93457 * 0.02562 * 14 13 12 16 16 C 1.41265 * 120.15663 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00254 * 353.81810 * 16 15 14 18 18 C 1.40064 * 120.00033 * 173.81895 * 16 15 14 19 19 N 1.30729 * 119.99665 * 6.33093 * 18 16 15 20 20 Si 1.86797 * 120.00359 * 186.32796 * 18 16 15 21 21 H 1.48504 * 109.46841 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47284 * 119.99862 * 20 18 16 23 23 H 1.48497 * 109.47476 * 240.00530 * 20 18 16 24 24 N 1.32231 * 119.97198 * 179.72094 * 11 10 9 25 25 H 1.08993 * 109.47219 * 300.00379 * 1 2 3 26 26 H 1.09006 * 109.46852 * 59.99736 * 1 2 3 27 27 H 1.08995 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47063 * 239.99893 * 2 1 3 29 29 H 1.09002 * 109.47109 * 119.99816 * 2 1 3 30 30 H 1.09003 * 109.46969 * 299.99339 * 8 6 4 31 31 H 1.08997 * 109.47150 * 59.99795 * 8 6 4 32 32 H 1.09006 * 109.46831 * 179.97438 * 8 6 4 33 33 H 1.09007 * 109.46896 * 295.00133 * 9 6 4 34 34 H 1.09002 * 109.47164 * 54.99833 * 9 6 4 35 35 H 0.96995 * 120.00453 * 359.97438 * 10 9 6 36 36 H 1.08001 * 119.84170 * 359.95006 * 12 11 10 37 37 H 1.08004 * 120.03109 * 179.97438 * 14 13 12 38 38 H 0.97003 * 120.00282 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5853 3.4689 -0.8904 8 6 3.4487 3.6850 1.2486 9 6 5.4487 2.8572 0.0001 10 7 6.0084 4.2057 -0.1207 11 6 7.3847 4.3867 -0.1423 12 6 8.2369 3.2802 -0.0490 13 7 9.5477 3.4446 -0.0694 14 6 10.0650 4.6533 -0.1783 15 6 9.2187 5.7731 -0.2727 16 6 9.7675 7.0695 -0.3900 17 1 10.8345 7.2137 -0.3072 18 6 8.9276 8.1679 -0.6137 19 7 7.6297 8.0136 -0.5907 20 14 9.6621 9.8532 -0.9448 21 1 11.1441 9.7611 -0.9183 22 1 9.2203 10.3323 -2.2791 23 1 9.2062 10.8058 0.0991 24 7 7.8893 5.6036 -0.2569 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3601 3.7421 1.2480 31 1 3.7842 3.1534 2.1390 32 1 3.8657 4.6922 1.2484 33 1 5.7888 2.4048 0.9318 34 1 5.7808 2.2492 -0.8414 35 1 5.4175 4.9721 -0.1857 36 1 7.8210 2.2875 0.0403 37 1 11.1371 4.7831 -0.1941 38 1 7.0480 8.7742 -0.7460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160891212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:24 Heat of formation + Delta-G solvation = -51.129330 kcal Electronic energy + Delta-G solvation = -21076.716320 eV Core-core repulsion = 17726.029022 eV Total energy + Delta-G solvation = -3350.687298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72640 -38.90046 -37.15835 -36.00923 -33.94853 -33.13703 -31.87567 -31.25503 -28.93784 -26.16450 -25.81062 -24.54736 -22.73020 -22.33527 -21.06376 -20.20109 -17.91680 -17.36694 -16.97586 -16.77965 -16.06353 -15.18527 -15.12109 -14.81172 -14.71910 -14.07232 -13.82124 -13.69438 -13.18921 -13.08124 -12.92827 -12.59106 -12.34832 -12.16552 -11.85047 -11.57075 -11.48346 -11.36083 -11.32271 -10.98879 -10.75247 -10.68746 -10.42677 -10.31722 -9.85319 -9.62927 -9.36267 -8.34346 -7.37564 -6.72147 -6.44094 -4.63990 2.09311 2.41671 2.70844 3.05122 3.09481 3.12345 3.29748 3.88168 4.05907 4.45449 4.63578 4.68509 4.72583 4.76250 4.82156 4.98286 5.11175 5.40171 5.46795 5.64517 5.65345 5.68730 5.84908 5.99651 6.02312 6.10146 6.15420 6.28327 6.34978 6.54428 6.81333 7.04877 7.15015 7.59169 7.63940 7.95680 8.05282 8.42912 8.57060 8.86347 9.44264 10.01240 10.19657 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.003426 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.337418 B = 8171.180730 C = 8987.615718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.502 6.502 6 C -0.093 4.093 7 H 0.115 0.885 8 C -0.144 4.144 9 C 0.155 3.845 10 N -0.731 5.731 11 C 0.374 3.626 12 C -0.167 4.167 13 N -0.408 5.408 14 C -0.107 4.107 15 C 0.245 3.755 16 C -0.416 4.416 17 H 0.091 0.909 18 C 0.068 3.932 19 N -0.710 5.710 20 Si 0.910 3.090 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.273 1.273 24 N -0.508 5.508 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 -6.838 1.028 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.314 3.686 5 O -0.389 6.389 6 C -0.112 4.112 7 H 0.133 0.867 8 C -0.201 4.201 9 C 0.029 3.971 10 N -0.370 5.370 11 C 0.131 3.869 12 C -0.329 4.329 13 N -0.119 5.119 14 C -0.277 4.277 15 C 0.117 3.883 16 C -0.449 4.449 17 H 0.109 0.891 18 C -0.158 4.158 19 N -0.331 5.331 20 Si 0.734 3.266 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.198 1.198 24 N -0.234 5.234 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.591 -7.298 1.029 16.347 hybrid contribution -0.037 0.828 -0.239 0.863 sum -14.629 -6.470 0.790 16.015 Atomic orbital electron populations 1.21803 0.92631 1.02925 1.03559 1.23033 0.95334 0.80313 1.02699 1.86500 1.24543 1.32291 1.84085 1.23538 0.80523 0.92371 0.72146 1.90696 1.60307 1.43076 1.44802 1.21199 0.96656 0.90301 1.03092 0.86691 1.21788 1.01800 1.01261 0.95255 1.20886 0.88413 0.85422 1.02394 1.43974 1.03458 1.06284 1.83254 1.19433 0.84595 0.92194 0.90722 1.21984 0.89721 0.96812 1.24366 1.67513 1.12781 1.25796 1.05800 1.22917 0.99255 0.88894 1.16617 1.19093 0.87105 0.93877 0.88217 1.19647 0.95038 0.89876 1.40366 0.89135 1.26129 0.94682 1.01220 0.93790 1.70117 1.03729 1.31337 1.27964 0.86221 0.80673 0.81004 0.78680 1.18183 1.19791 1.19823 1.69010 1.13126 1.17611 1.23684 0.91449 0.91454 0.90280 0.91185 0.91184 0.91283 0.91895 0.90188 0.91747 0.91680 0.76843 0.86116 0.85259 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.00 10.12 -39.25 -0.40 -4.40 16 4 C 0.47 6.13 7.26 36.01 0.26 6.39 16 5 O -0.50 -7.91 15.67 -18.75 -0.29 -8.21 16 6 C -0.09 -1.14 2.86 -91.77 -0.26 -1.40 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 8 C -0.14 -1.56 9.00 37.16 0.33 -1.23 16 9 C 0.15 2.45 3.64 -4.04 -0.01 2.44 16 10 N -0.73 -14.02 5.45 -60.27 -0.33 -14.35 16 11 C 0.37 9.12 7.66 -155.01 -1.19 7.93 16 12 C -0.17 -4.14 10.50 -16.78 -0.18 -4.31 16 13 N -0.41 -10.67 10.47 -12.11 -0.13 -10.80 16 14 C -0.11 -2.81 10.97 -16.59 -0.18 -2.99 16 15 C 0.25 6.76 6.54 -84.84 -0.55 6.21 16 16 C -0.42 -10.89 9.15 -37.75 -0.35 -11.24 16 17 H 0.09 2.19 7.85 -52.49 -0.41 1.78 16 18 C 0.07 1.67 5.49 -17.34 -0.10 1.58 16 19 N -0.71 -18.12 11.51 55.55 0.64 -17.48 16 20 Si 0.91 17.97 29.56 -169.99 -5.03 12.94 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 N -0.51 -13.83 8.10 -10.14 -0.08 -13.92 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.92 7.18 -51.93 -0.37 0.54 16 33 H 0.06 1.07 7.93 -51.92 -0.41 0.66 16 34 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 35 H 0.40 7.22 7.78 -40.82 -0.32 6.91 16 36 H 0.12 2.73 6.70 -52.49 -0.35 2.37 16 37 H 0.13 3.10 8.06 -52.48 -0.42 2.67 16 38 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -31.46 328.38 -7.48 -38.94 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.21 Total: 8.72 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.61 Total: 3.60 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.10 Total: -56.54 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.69 Total: -12.61 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.46 -7.48 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160891212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.190 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds