Wall clock time and date at job start Tue Mar 31 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47535 * 2 1 4 4 C 1.34226 * 117.00202 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00311 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99653 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47346 * 299.99680 * 6 4 3 8 8 C 1.53000 * 109.47191 * 60.00312 * 6 4 3 9 9 C 1.53008 * 109.46837 * 180.02562 * 6 4 3 10 10 N 1.46497 * 109.46911 * 175.00289 * 9 6 4 11 11 C 1.38832 * 119.99953 * 179.97438 * 10 9 6 12 12 C 1.39970 * 119.96673 * 0.02562 * 11 10 9 13 13 N 1.32124 * 120.31200 * 179.97438 * 12 11 10 14 14 C 1.31927 * 120.27724 * 359.97438 * 13 12 11 15 15 C 1.40680 * 119.93457 * 0.02562 * 14 13 12 16 16 C 1.41265 * 120.15663 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00254 * 353.81810 * 16 15 14 18 18 C 1.40064 * 120.00033 * 173.81895 * 16 15 14 19 19 N 1.30729 * 119.99665 * 6.33093 * 18 16 15 20 20 Si 1.86797 * 120.00359 * 186.32796 * 18 16 15 21 21 H 1.48504 * 109.46841 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47284 * 119.99862 * 20 18 16 23 23 H 1.48497 * 109.47476 * 240.00530 * 20 18 16 24 24 N 1.32231 * 119.97198 * 179.72094 * 11 10 9 25 25 H 1.08993 * 109.47219 * 300.00379 * 1 2 3 26 26 H 1.09006 * 109.46852 * 59.99736 * 1 2 3 27 27 H 1.08995 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47063 * 239.99893 * 2 1 3 29 29 H 1.09002 * 109.47109 * 119.99816 * 2 1 3 30 30 H 1.09003 * 109.46969 * 299.99339 * 8 6 4 31 31 H 1.08997 * 109.47150 * 59.99795 * 8 6 4 32 32 H 1.09006 * 109.46831 * 179.97438 * 8 6 4 33 33 H 1.09007 * 109.46896 * 295.00133 * 9 6 4 34 34 H 1.09002 * 109.47164 * 54.99833 * 9 6 4 35 35 H 0.96995 * 120.00453 * 359.97438 * 10 9 6 36 36 H 1.08001 * 119.84170 * 359.95006 * 12 11 10 37 37 H 1.08004 * 120.03109 * 179.97438 * 14 13 12 38 38 H 0.97003 * 120.00282 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5853 3.4689 -0.8904 8 6 3.4487 3.6850 1.2486 9 6 5.4487 2.8572 0.0001 10 7 6.0084 4.2057 -0.1207 11 6 7.3847 4.3867 -0.1423 12 6 8.2369 3.2802 -0.0490 13 7 9.5477 3.4446 -0.0694 14 6 10.0650 4.6533 -0.1783 15 6 9.2187 5.7731 -0.2727 16 6 9.7675 7.0695 -0.3900 17 1 10.8345 7.2137 -0.3072 18 6 8.9276 8.1679 -0.6137 19 7 7.6297 8.0136 -0.5907 20 14 9.6621 9.8532 -0.9448 21 1 11.1441 9.7611 -0.9183 22 1 9.2203 10.3323 -2.2791 23 1 9.2062 10.8058 0.0991 24 7 7.8893 5.6036 -0.2569 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3601 3.7421 1.2480 31 1 3.7842 3.1534 2.1390 32 1 3.8657 4.6922 1.2484 33 1 5.7888 2.4048 0.9318 34 1 5.7808 2.2492 -0.8414 35 1 5.4175 4.9721 -0.1857 36 1 7.8210 2.2875 0.0403 37 1 11.1371 4.7831 -0.1941 38 1 7.0480 8.7742 -0.7460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160891212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:23 Heat of formation + Delta-G solvation = -70.742896 kcal Electronic energy + Delta-G solvation = -21077.566828 eV Core-core repulsion = 17726.029022 eV Total energy + Delta-G solvation = -3351.537806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75727 -40.78727 -38.27079 -37.32527 -35.82515 -34.60856 -33.24290 -32.44231 -30.69672 -27.75531 -27.34900 -25.57782 -24.30853 -23.59923 -22.75287 -21.33820 -19.42685 -18.82104 -18.46193 -17.79117 -17.36600 -17.00855 -16.68564 -16.36909 -16.12244 -15.40622 -15.19327 -14.85735 -14.62172 -14.47077 -13.96328 -13.58835 -13.36552 -13.23930 -13.19444 -12.99009 -12.93758 -12.60944 -12.53819 -12.52398 -12.12904 -11.95635 -11.73827 -11.54352 -11.46183 -11.39010 -11.34406 -10.23386 -9.32743 -8.52300 -8.32657 -6.62626 0.83529 1.06405 1.25345 1.44950 1.45493 1.56944 1.60937 2.23271 2.56442 2.84234 3.38507 3.72645 3.78076 3.91718 4.00957 4.08008 4.12749 4.21804 4.35208 4.43664 4.53014 4.60964 4.70714 4.80561 4.84330 4.88597 4.93131 4.97493 5.12746 5.16211 5.21866 5.22664 5.41259 5.70230 6.11166 6.17913 6.61811 6.65488 6.68841 6.99665 7.46312 8.06620 8.36379 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.003426 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.337418 B = 8171.180730 C = 8987.615718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.478 3.522 5 O -0.535 6.535 6 C -0.084 4.084 7 H 0.135 0.865 8 C -0.139 4.139 9 C 0.156 3.844 10 N -0.715 5.715 11 C 0.370 3.630 12 C -0.181 4.181 13 N -0.418 5.418 14 C -0.132 4.132 15 C 0.214 3.786 16 C -0.438 4.438 17 H 0.101 0.899 18 C 0.023 3.977 19 N -0.739 5.739 20 Si 0.994 3.006 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.265 1.265 24 N -0.535 5.535 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.402 0.598 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.058 -5.830 0.870 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.322 3.678 5 O -0.425 6.425 6 C -0.103 4.103 7 H 0.152 0.848 8 C -0.196 4.196 9 C 0.031 3.969 10 N -0.353 5.353 11 C 0.125 3.875 12 C -0.343 4.343 13 N -0.130 5.130 14 C -0.301 4.301 15 C 0.087 3.913 16 C -0.470 4.470 17 H 0.119 0.881 18 C -0.201 4.201 19 N -0.360 5.360 20 Si 0.813 3.187 21 H -0.175 1.175 22 H -0.192 1.192 23 H -0.189 1.189 24 N -0.263 5.263 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.130 -6.316 0.879 17.345 hybrid contribution 0.303 0.431 -0.180 0.557 sum -15.828 -5.885 0.699 16.901 Atomic orbital electron populations 1.21822 0.90199 1.04393 1.03828 1.23341 0.97207 0.79094 1.02632 1.86494 1.23215 1.33804 1.83460 1.23541 0.80990 0.92018 0.71255 1.90691 1.61156 1.44084 1.46527 1.21087 0.93808 0.90589 1.04806 0.84768 1.21769 1.03215 1.00429 0.94166 1.20933 0.91055 0.83343 1.01561 1.43996 1.01654 1.07915 1.81710 1.19705 0.86551 0.91507 0.89766 1.22294 0.89607 0.97784 1.24613 1.67490 1.13613 1.25916 1.05978 1.23095 0.99920 0.88883 1.18176 1.19538 0.87797 0.94959 0.89036 1.20073 0.96006 0.90313 1.40599 0.88112 1.27087 0.94926 1.05090 0.92949 1.70176 1.05156 1.33211 1.27456 0.84977 0.79892 0.75137 0.78650 1.17541 1.19185 1.18928 1.69036 1.13241 1.18766 1.25255 0.91099 0.91210 0.88224 0.91370 0.91282 0.89000 0.92310 0.90732 0.92444 0.92612 0.76142 0.84471 0.83995 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.35 -7.31 10.12 -51.38 -0.52 -7.83 16 4 C 0.48 11.89 7.26 71.24 0.52 12.40 16 5 O -0.54 -16.70 15.67 21.97 0.34 -16.36 16 6 C -0.08 -1.93 2.86 -11.54 -0.03 -1.96 16 7 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 8 C -0.14 -2.76 9.00 71.98 0.65 -2.11 16 9 C 0.16 4.89 3.64 86.38 0.31 5.20 16 10 N -0.72 -27.30 5.45 -344.59 -1.88 -29.18 16 11 C 0.37 18.29 7.66 133.38 1.02 19.31 16 12 C -0.18 -9.08 10.50 85.07 0.89 -8.19 16 13 N -0.42 -22.35 10.47 -192.23 -2.01 -24.36 16 14 C -0.13 -7.09 10.97 85.28 0.94 -6.16 16 15 C 0.21 12.07 6.54 40.15 0.26 12.34 16 16 C -0.44 -23.05 9.15 23.46 0.21 -22.84 16 17 H 0.10 4.89 7.85 -2.91 -0.02 4.86 16 18 C 0.02 1.13 5.49 85.30 0.47 1.60 16 19 N -0.74 -37.49 11.51 21.84 0.25 -37.24 16 20 Si 0.99 35.96 29.56 68.60 2.03 37.99 16 21 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 23 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 24 N -0.54 -29.65 8.10 -186.00 -1.51 -31.15 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.09 1.43 8.11 -2.39 -0.02 1.42 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.59 7.18 -2.38 -0.02 1.58 16 33 H 0.06 1.90 7.93 -2.38 -0.02 1.89 16 34 H 0.06 1.88 7.75 -2.39 -0.02 1.86 16 35 H 0.40 14.44 7.78 -92.71 -0.72 13.72 16 36 H 0.14 6.26 6.70 -2.91 -0.02 6.24 16 37 H 0.14 6.98 8.06 -2.91 -0.02 6.95 16 38 H 0.28 12.77 8.29 -92.71 -0.77 12.00 16 Total: -1.00 -68.17 328.38 3.49 -64.68 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.35 Total: 33.29 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.43 Total: 10.16 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.14 Total: -121.93 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.18 Total: -24.19 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -68.17 3.49 -64.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160891212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.065 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds