Wall clock time and date at job start Tue Mar 31 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99905 * 2 1 4 4 C 1.39151 * 120.50531 * 0.23806 * 3 2 1 5 5 C 1.38306 * 118.62672 * 180.26233 * 4 3 2 6 6 C 1.39942 * 119.59824 * 359.74602 * 5 4 3 7 7 N 1.38900 * 119.49723 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47045 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47045 * 179.97438 * 9 8 7 11 11 C 1.34769 * 120.00399 * 179.97438 * 10 9 8 12 12 C 1.50694 * 120.00365 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99765 * 0.02562 * 11 10 9 14 14 N 1.31865 * 121.00471 * 359.97438 * 6 5 4 15 15 C 1.33830 * 121.47224 * 0.02562 * 14 6 5 16 16 C 1.40915 * 119.84717 * 179.97438 * 15 14 6 17 17 H 1.08002 * 120.00197 * 180.02562 * 16 15 14 18 18 C 1.40028 * 119.99903 * 359.71557 * 16 15 14 19 19 N 1.30774 * 120.00278 * 0.28207 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 180.27649 * 18 16 15 21 21 H 1.48504 * 109.47118 * 60.00518 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47374 * 300.00624 * 20 18 16 24 24 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47271 * 300.00195 * 1 2 3 26 26 H 1.09007 * 109.46926 * 59.99721 * 1 2 3 27 27 H 1.07999 * 120.68585 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.19992 * 179.76292 * 5 4 3 29 29 H 0.97007 * 119.99763 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.46601 * 299.99887 * 8 7 6 31 31 H 1.08997 * 109.46669 * 59.99569 * 8 7 6 32 32 H 1.08995 * 109.46960 * 299.99623 * 9 8 7 33 33 H 1.08995 * 109.47102 * 60.00206 * 9 8 7 34 34 H 0.97007 * 119.99956 * 359.97438 * 10 9 8 35 35 H 1.09008 * 109.47004 * 60.00747 * 12 11 10 36 36 H 1.09004 * 109.47662 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47573 * 300.00443 * 12 11 10 38 38 H 0.96996 * 120.00391 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0050 5 6 1.9650 3.5931 -0.0008 6 6 3.3643 3.6107 -0.0060 7 7 4.0330 4.8282 -0.0123 8 6 3.2736 6.0810 -0.0129 9 6 4.2428 7.2649 -0.0197 10 7 3.4834 8.5177 -0.0209 11 6 4.1321 9.6990 -0.0261 12 6 3.3510 10.9877 -0.0279 13 8 5.3446 9.7249 -0.0302 14 7 4.0578 2.4891 -0.0050 15 6 3.4543 1.2946 0.0005 16 6 4.2291 0.1175 0.0009 17 1 3.7447 -0.8478 0.0049 18 6 5.6269 0.1994 -0.0105 19 7 6.2135 1.3682 -0.0159 20 14 6.6538 -1.3610 -0.0179 21 1 6.3314 -2.1601 -1.2274 22 1 8.0954 -1.0048 -0.0292 23 1 6.3510 -2.1587 1.1975 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2177 2.3479 0.0085 28 1 1.4100 4.5196 -0.0010 29 1 5.0028 4.8489 -0.0163 30 1 2.6423 6.1227 -0.9004 31 1 2.6494 6.1279 0.8795 32 1 4.8737 7.2229 0.8681 33 1 4.8672 7.2181 -0.9118 34 1 2.5136 8.4970 -0.0180 35 1 2.7256 11.0347 0.8637 36 1 4.0414 11.8312 -0.0317 37 1 2.7209 11.0294 -0.9163 38 1 7.1818 1.4249 -0.0235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161659150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:14 Heat of formation + Delta-G solvation = -34.654770 kcal Electronic energy + Delta-G solvation = -20965.153994 eV Core-core repulsion = 17615.181087 eV Total energy + Delta-G solvation = -3349.972907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.68456 -38.82546 -37.10420 -35.74340 -34.17216 -33.08327 -30.72389 -30.30052 -29.12099 -27.21361 -26.30704 -24.94862 -22.78296 -21.31499 -20.90706 -20.20969 -17.46767 -17.12314 -16.64604 -16.47314 -15.87590 -15.80174 -14.89004 -14.73510 -14.67457 -14.54422 -14.04072 -13.58020 -13.03887 -12.88829 -12.82365 -12.64905 -12.36907 -12.29301 -11.67303 -11.60750 -11.47325 -11.19047 -11.14577 -10.59086 -10.44830 -10.42126 -10.07767 -9.81025 -9.44961 -9.21666 -8.48377 -8.01804 -7.67935 -6.37537 -6.31976 -4.36113 2.50004 2.83773 2.97388 3.12144 3.12935 3.16306 3.28681 4.00145 4.25927 4.60871 4.64298 4.81300 4.88540 5.05535 5.08874 5.20124 5.51874 5.58184 5.79063 5.79978 5.93309 5.96926 5.97478 6.08100 6.08599 6.25033 6.37564 6.67540 6.79023 7.20616 7.26950 7.33608 7.46814 7.67748 8.06936 8.18620 8.27645 8.41964 8.65110 8.79365 9.16504 10.17169 10.35557 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.003938 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.158868 B = 7108.063297 C = 8661.154398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.076 4.076 4 C -0.114 4.114 5 C -0.348 4.348 6 C 0.394 3.606 7 N -0.737 5.737 8 C 0.135 3.865 9 C 0.107 3.893 10 N -0.727 5.727 11 C 0.508 3.492 12 C -0.173 4.173 13 O -0.547 6.547 14 N -0.513 5.513 15 C 0.289 3.711 16 C -0.411 4.411 17 H 0.091 0.909 18 C 0.067 3.933 19 N -0.713 5.713 20 Si 0.909 3.091 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.398 0.602 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 10.631 -0.017 12.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.123 4.123 4 C -0.139 4.139 5 C -0.375 4.375 6 C 0.157 3.843 7 N -0.375 5.375 8 C 0.008 3.992 9 C -0.017 4.017 10 N -0.380 5.380 11 C 0.295 3.705 12 C -0.233 4.233 13 O -0.424 6.424 14 N -0.235 5.235 15 C 0.161 3.839 16 C -0.444 4.444 17 H 0.109 0.891 18 C -0.158 4.158 19 N -0.334 5.334 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.233 0.767 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.236 0.764 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.459 10.699 -0.025 12.011 hybrid contribution -1.014 -0.403 -0.002 1.092 sum -6.473 10.295 -0.027 12.161 Atomic orbital electron populations 1.22687 0.82199 1.01516 0.99631 1.85922 1.17833 1.27889 1.90884 1.20036 0.93439 0.83130 1.15721 1.20657 0.97254 0.92359 1.03583 1.20317 0.92722 0.96302 1.28120 1.18403 0.87644 0.86489 0.91786 1.43793 1.07931 1.01122 1.84688 1.21066 0.93816 0.83210 1.01072 1.21473 0.94712 0.82297 1.03222 1.45888 1.10526 1.05782 1.75796 1.20804 0.88455 0.85549 0.75682 1.21910 1.01873 0.95225 1.04269 1.90743 1.14489 1.87850 1.49353 1.68361 1.34747 0.94948 1.25494 1.17750 0.85009 0.90988 0.90168 1.19516 0.90555 0.93120 1.41162 0.89101 1.26087 0.98760 0.97192 0.93767 1.70142 1.10367 1.24539 1.28388 0.86364 0.78309 0.82043 0.79953 1.18931 1.20351 1.18931 0.90175 0.94504 0.94511 0.88268 0.89087 0.76668 0.92589 0.92595 0.90806 0.90817 0.76353 0.89377 0.89013 0.89368 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.27 9.61 -18.56 -0.18 -7.45 16 3 C -0.08 -1.92 6.74 -38.11 -0.26 -2.18 16 4 C -0.11 -2.61 9.12 -39.22 -0.36 -2.96 16 5 C -0.35 -7.83 9.33 -38.92 -0.36 -8.19 16 6 C 0.39 9.45 7.65 -155.27 -1.19 8.26 16 7 N -0.74 -14.31 5.72 -60.35 -0.35 -14.65 16 8 C 0.14 1.93 5.00 -4.04 -0.02 1.91 16 9 C 0.11 1.37 5.79 -4.04 -0.02 1.35 16 10 N -0.73 -7.36 5.56 -60.30 -0.33 -7.70 16 11 C 0.51 5.78 7.94 -10.99 -0.09 5.70 16 12 C -0.17 -1.12 10.32 36.00 0.37 -0.75 16 13 O -0.55 -8.97 17.09 5.56 0.09 -8.88 16 14 N -0.51 -14.03 7.88 -10.20 -0.08 -14.11 16 15 C 0.29 8.07 6.56 -84.85 -0.56 7.52 16 16 C -0.41 -11.28 8.94 -37.90 -0.34 -11.62 16 17 H 0.09 2.42 7.31 -52.49 -0.38 2.03 16 18 C 0.07 1.73 5.50 -17.33 -0.10 1.63 16 19 N -0.71 -18.84 11.45 55.55 0.64 -18.20 16 20 Si 0.91 18.94 29.56 -169.99 -5.02 13.91 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 26 H 0.04 0.59 7.70 -51.92 -0.40 0.19 16 27 H 0.10 1.96 6.43 -52.49 -0.34 1.62 16 28 H 0.09 1.77 6.67 -52.48 -0.35 1.42 16 29 H 0.40 7.81 8.59 -40.82 -0.35 7.45 16 30 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 31 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16 35 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -33.53 326.69 -7.29 -40.82 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.06 Total: 9.05 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.92 Total: 2.28 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.12 Total: -54.66 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.08 Total: -16.32 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.53 -7.29 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161659150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.167 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds