Wall clock time and date at job start Tue Mar 31 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99905 * 2 1 4 4 C 1.39151 * 120.50531 * 0.23806 * 3 2 1 5 5 C 1.38306 * 118.62672 * 180.26233 * 4 3 2 6 6 C 1.39942 * 119.59824 * 359.74602 * 5 4 3 7 7 N 1.38900 * 119.49723 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47045 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47045 * 179.97438 * 9 8 7 11 11 C 1.34769 * 120.00399 * 179.97438 * 10 9 8 12 12 C 1.50694 * 120.00365 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99765 * 0.02562 * 11 10 9 14 14 N 1.31865 * 121.00471 * 359.97438 * 6 5 4 15 15 C 1.33830 * 121.47224 * 0.02562 * 14 6 5 16 16 C 1.40915 * 119.84717 * 179.97438 * 15 14 6 17 17 H 1.08002 * 120.00197 * 180.02562 * 16 15 14 18 18 C 1.40028 * 119.99903 * 359.71557 * 16 15 14 19 19 N 1.30774 * 120.00278 * 0.28207 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 180.27649 * 18 16 15 21 21 H 1.48504 * 109.47118 * 60.00518 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47374 * 300.00624 * 20 18 16 24 24 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47271 * 300.00195 * 1 2 3 26 26 H 1.09007 * 109.46926 * 59.99721 * 1 2 3 27 27 H 1.07999 * 120.68585 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.19992 * 179.76292 * 5 4 3 29 29 H 0.97007 * 119.99763 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.46601 * 299.99887 * 8 7 6 31 31 H 1.08997 * 109.46669 * 59.99569 * 8 7 6 32 32 H 1.08995 * 109.46960 * 299.99623 * 9 8 7 33 33 H 1.08995 * 109.47102 * 60.00206 * 9 8 7 34 34 H 0.97007 * 119.99956 * 359.97438 * 10 9 8 35 35 H 1.09008 * 109.47004 * 60.00747 * 12 11 10 36 36 H 1.09004 * 109.47662 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47573 * 300.00443 * 12 11 10 38 38 H 0.96996 * 120.00391 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0050 5 6 1.9650 3.5931 -0.0008 6 6 3.3643 3.6107 -0.0060 7 7 4.0330 4.8282 -0.0123 8 6 3.2736 6.0810 -0.0129 9 6 4.2428 7.2649 -0.0197 10 7 3.4834 8.5177 -0.0209 11 6 4.1321 9.6990 -0.0261 12 6 3.3510 10.9877 -0.0279 13 8 5.3446 9.7249 -0.0302 14 7 4.0578 2.4891 -0.0050 15 6 3.4543 1.2946 0.0005 16 6 4.2291 0.1175 0.0009 17 1 3.7447 -0.8478 0.0049 18 6 5.6269 0.1994 -0.0105 19 7 6.2135 1.3682 -0.0159 20 14 6.6538 -1.3610 -0.0179 21 1 6.3314 -2.1601 -1.2274 22 1 8.0954 -1.0048 -0.0292 23 1 6.3510 -2.1587 1.1975 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2177 2.3479 0.0085 28 1 1.4100 4.5196 -0.0010 29 1 5.0028 4.8489 -0.0163 30 1 2.6423 6.1227 -0.9004 31 1 2.6494 6.1279 0.8795 32 1 4.8737 7.2229 0.8681 33 1 4.8672 7.2181 -0.9118 34 1 2.5136 8.4970 -0.0180 35 1 2.7256 11.0347 0.8637 36 1 4.0414 11.8312 -0.0317 37 1 2.7209 11.0294 -0.9163 38 1 7.1818 1.4249 -0.0235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161659150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:13 Heat of formation + Delta-G solvation = -60.000696 kcal Electronic energy + Delta-G solvation = -20966.253076 eV Core-core repulsion = 17615.181087 eV Total energy + Delta-G solvation = -3351.071989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73319 -40.52178 -38.72191 -37.13696 -35.69845 -34.68240 -32.16147 -31.78175 -30.46926 -28.46851 -27.92596 -26.65861 -24.12901 -23.02524 -22.22438 -21.53550 -19.30508 -18.47847 -18.16561 -17.79747 -17.08391 -16.88664 -16.59506 -16.29873 -16.20338 -15.63898 -15.54830 -14.85620 -14.44419 -14.37725 -14.23171 -14.05410 -13.33676 -13.27911 -13.23502 -12.91318 -12.90311 -12.72153 -12.67456 -12.46266 -12.06883 -11.94867 -11.57060 -11.25390 -11.05425 -10.22326 -10.11742 -9.89514 -9.56415 -8.24810 -8.09042 -6.31513 1.01138 1.28811 1.42307 1.54300 1.59133 1.62504 1.99080 2.26857 2.85770 2.92305 3.10148 3.70935 3.95089 3.98273 4.08603 4.27671 4.40441 4.47934 4.54369 4.55733 4.65597 4.69891 4.77824 4.79100 4.89296 4.92671 4.96703 5.12394 5.33145 5.34942 5.52141 5.73158 5.86686 6.26773 6.42441 6.53842 6.72875 6.83846 6.97622 7.24072 7.34258 8.30351 8.49720 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.003938 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.158868 B = 7108.063297 C = 8661.154398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.099 4.099 4 C -0.112 4.112 5 C -0.340 4.340 6 C 0.374 3.626 7 N -0.736 5.736 8 C 0.140 3.860 9 C 0.119 3.881 10 N -0.713 5.713 11 C 0.502 3.498 12 C -0.162 4.162 13 O -0.606 6.606 14 N -0.545 5.545 15 C 0.252 3.748 16 C -0.452 4.452 17 H 0.084 0.916 18 C 0.025 3.975 19 N -0.749 5.749 20 Si 0.984 3.016 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.261 1.261 24 H 0.110 0.890 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.394 0.606 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.421 0.579 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 11.700 -0.019 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.366 4.366 6 C 0.135 3.865 7 N -0.373 5.373 8 C 0.015 3.985 9 C -0.006 4.006 10 N -0.367 5.367 11 C 0.291 3.709 12 C -0.221 4.221 13 O -0.487 6.487 14 N -0.269 5.269 15 C 0.124 3.876 16 C -0.484 4.484 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.372 5.372 20 Si 0.805 3.195 21 H -0.185 1.185 22 H -0.191 1.191 23 H -0.185 1.185 24 H 0.128 0.872 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.227 0.773 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.259 0.741 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.648 11.816 -0.026 14.075 hybrid contribution -0.549 -0.606 -0.001 0.818 sum -8.197 11.210 -0.027 13.887 Atomic orbital electron populations 1.23031 0.79070 1.03992 1.00636 1.85857 1.21093 1.27315 1.91014 1.20094 0.93190 0.84710 1.16670 1.21063 0.98994 0.91568 1.02000 1.20740 0.92323 0.97759 1.25783 1.18844 0.88812 0.87022 0.91802 1.43982 1.08038 1.01473 1.83819 1.21214 0.93743 0.81345 1.02193 1.21150 0.94394 0.83152 1.01936 1.45766 1.11386 1.04580 1.74985 1.21770 0.88065 0.87022 0.74044 1.21922 1.01683 0.91751 1.06749 1.90724 1.17260 1.88648 1.52096 1.68285 1.36337 0.95868 1.26397 1.18177 0.86843 0.91525 0.91071 1.19714 0.91901 0.93047 1.43775 0.89800 1.26921 0.99293 1.00641 0.92806 1.70230 1.10813 1.26618 1.29489 0.85239 0.76763 0.77586 0.79934 1.18536 1.19146 1.18526 0.87195 0.93327 0.93347 0.84782 0.85487 0.77258 0.91200 0.91206 0.92225 0.92236 0.74111 0.86734 0.89346 0.86727 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.83 113.37 1.11 2.02 16 2 O -0.34 -15.80 9.61 -89.32 -0.86 -16.66 16 3 C -0.10 -5.06 6.74 23.22 0.16 -4.91 16 4 C -0.11 -4.92 9.12 22.51 0.21 -4.71 16 5 C -0.34 -14.61 9.33 22.70 0.21 -14.39 16 6 C 0.37 17.89 7.65 133.45 1.02 18.91 16 7 N -0.74 -28.44 5.72 -344.86 -1.97 -30.41 16 8 C 0.14 3.74 5.00 86.38 0.43 4.17 16 9 C 0.12 2.95 5.79 86.38 0.50 3.45 16 10 N -0.71 -12.95 5.56 -463.09 -2.57 -15.52 16 11 C 0.50 10.66 7.94 87.66 0.70 11.35 16 12 C -0.16 -1.60 10.32 71.23 0.74 -0.87 16 13 O -0.61 -19.98 17.09 -3.03 -0.05 -20.03 16 14 N -0.55 -30.75 7.88 -186.18 -1.47 -32.22 16 15 C 0.25 14.58 6.56 40.23 0.26 14.85 16 16 C -0.45 -25.89 8.94 23.36 0.21 -25.68 16 17 H 0.08 4.69 7.31 -2.91 -0.02 4.67 16 18 C 0.03 1.33 5.50 85.28 0.47 1.80 16 19 N -0.75 -41.12 11.45 21.84 0.25 -40.87 16 20 Si 0.98 39.92 29.56 68.60 2.03 41.94 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.05 1.43 7.68 -2.39 -0.02 1.42 16 26 H 0.05 1.43 7.70 -2.38 -0.02 1.41 16 27 H 0.13 4.83 6.43 -2.91 -0.02 4.81 16 28 H 0.13 4.44 6.67 -2.91 -0.02 4.42 16 29 H 0.39 15.84 8.59 -92.70 -0.80 15.04 16 30 H 0.07 1.72 7.91 -2.39 -0.02 1.70 16 31 H 0.07 1.72 7.92 -2.39 -0.02 1.70 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.42 4.44 8.47 -92.70 -0.79 3.65 16 35 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.09 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.28 13.80 8.29 -92.71 -0.77 13.03 16 Total: -1.00 -77.28 326.69 0.89 -76.39 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.48 Total: 31.38 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.01 Total: 5.98 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -5.76 Total: -119.02 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.91 Total: -36.68 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -77.28 0.89 -76.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161659150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.392 kcal (2) G-P(sol) polarization free energy of solvation -77.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds