Wall clock time and date at job start Tue Mar 31 2020 01:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46906 * 110.99896 * 2 1 4 4 C 1.46895 * 110.99799 * 123.95443 * 2 1 3 5 5 C 1.53001 * 109.46968 * 169.99987 * 4 2 1 6 6 N 1.46496 * 109.47366 * 179.97438 * 5 4 2 7 7 C 1.39675 * 120.00367 * 179.97438 * 6 5 4 8 8 C 1.38167 * 119.98651 * 6.08200 * 7 6 5 9 9 C 1.41132 * 119.50497 * 180.02562 * 8 7 6 10 10 C 1.40362 * 120.25338 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00333 * 23.96888 * 10 9 8 12 12 C 1.46528 * 119.99840 * 203.97310 * 10 9 8 13 13 N 1.29509 * 119.99925 * 15.29774 * 12 10 9 14 14 Si 1.86802 * 120.00065 * 195.29880 * 12 10 9 15 15 H 1.48507 * 109.46857 * 89.99804 * 14 12 10 16 16 H 1.48492 * 109.46949 * 209.99855 * 14 12 10 17 17 H 1.48501 * 109.46801 * 330.00175 * 14 12 10 18 18 C 1.41343 * 119.49319 * 359.73317 * 9 8 7 19 19 C 1.36482 * 119.95859 * 0.52265 * 18 9 8 20 20 C 1.38658 * 120.50504 * 359.47325 * 19 18 9 21 21 N 1.48022 * 119.74185 * 180.25880 * 20 19 18 22 22 O 1.31693 * 120.00200 * 353.68438 * 21 20 19 23 23 O 1.31704 * 119.99809 * 173.68900 * 21 20 19 24 24 H 1.09001 * 109.46682 * 296.04889 * 1 2 3 25 25 H 1.08998 * 109.47022 * 56.04551 * 1 2 3 26 26 H 1.08995 * 109.46977 * 176.04752 * 1 2 3 27 27 H 1.08993 * 109.46688 * 183.95654 * 3 2 1 28 28 H 1.08996 * 109.46967 * 303.95586 * 3 2 1 29 29 H 1.08999 * 109.47134 * 63.95394 * 3 2 1 30 30 H 1.08994 * 109.47545 * 50.00305 * 4 2 1 31 31 H 1.09002 * 109.47342 * 289.99504 * 4 2 1 32 32 H 1.09005 * 109.47031 * 59.99495 * 5 4 2 33 33 H 1.08994 * 109.47295 * 300.00072 * 5 4 2 34 34 H 0.96995 * 120.00082 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.25191 * 359.97438 * 8 7 6 36 36 H 0.97002 * 119.99874 * 180.02562 * 13 12 10 37 37 H 1.08005 * 120.01829 * 180.29101 * 18 9 8 38 38 H 1.08008 * 119.74834 * 179.75433 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0296 -1.7187 2.1050 7 6 5.3919 -2.0190 2.1742 8 6 6.2637 -1.4912 1.2413 9 6 7.6381 -1.8018 1.3204 10 6 8.5375 -1.2747 0.3806 11 1 8.2951 -0.3643 -0.1474 12 6 9.8055 -1.9597 0.1157 13 7 9.9757 -3.1819 0.5089 14 14 11.1765 -1.0701 -0.7889 15 1 12.0449 -0.3713 0.1923 16 1 11.9849 -2.0537 -1.5531 17 1 10.5894 -0.0780 -1.7250 18 6 8.1027 -2.6436 2.3564 19 6 7.2221 -3.1575 3.2637 20 6 5.8719 -2.8518 3.1851 21 7 4.9325 -3.4139 4.1814 22 8 5.3565 -4.2976 5.0609 23 8 3.6726 -3.0303 4.1882 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8724 0.9233 30 1 1.5091 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0194 0.9322 33 1 3.7024 -1.4965 0.0451 34 1 3.4311 -2.0162 2.8080 35 1 5.8960 -0.8465 0.4567 36 1 10.8152 -3.6352 0.3338 37 1 9.1535 -2.8831 2.4278 38 1 7.5802 -3.8036 4.0516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161671250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:42 Heat of formation + Delta-G solvation = 37.834894 kcal Electronic energy + Delta-G solvation = -21438.233232 eV Core-core repulsion = 18091.403713 eV Total energy + Delta-G solvation = -3346.829519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.97331 -37.71238 -36.75645 -35.28691 -33.96071 -32.79029 -30.85842 -29.98032 -27.72678 -27.34063 -26.81535 -24.23366 -23.40760 -21.57088 -20.96060 -20.24112 -18.24042 -17.11957 -16.70891 -15.92940 -15.76577 -15.63644 -15.44280 -14.64995 -14.56708 -14.18118 -13.94861 -13.57342 -13.10599 -12.97333 -12.53140 -12.46566 -12.24697 -11.84093 -11.80489 -11.70291 -11.61050 -11.33325 -11.21048 -10.88838 -10.71674 -10.10580 -9.95075 -9.79281 -9.52460 -9.47092 -9.22155 -8.47623 -8.29107 -7.67404 -6.83170 -5.16435 0.84302 2.37730 2.62739 2.69125 2.80520 2.86032 2.89008 3.31728 3.62000 3.87521 4.40637 4.96585 5.04074 5.05867 5.19791 5.27588 5.46072 5.53170 5.60675 5.71106 5.73392 5.83673 6.04481 6.07794 6.14779 6.29505 6.37221 6.50911 6.59641 6.85501 6.90497 6.91426 7.13901 7.27554 7.33657 7.52944 7.70069 7.93708 8.07197 8.31408 8.35986 8.64641 9.17084 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.005298 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.349582 B = 5283.453888 C = 7278.146098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.018 3.982 4 C 0.045 3.955 5 C 0.127 3.873 6 N -0.737 5.737 7 C 0.302 3.698 8 C -0.314 4.314 9 C 0.136 3.864 10 C -0.372 4.372 11 H 0.102 0.898 12 C 0.061 3.939 13 N -0.712 5.712 14 Si 0.932 3.068 15 H -0.256 1.256 16 H -0.268 1.268 17 H -0.250 1.250 18 C -0.166 4.166 19 C -0.042 4.042 20 C -0.146 4.146 21 N 0.059 4.941 22 O -0.313 6.313 23 O -0.348 6.348 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.115 0.885 36 H 0.305 0.695 37 H 0.134 0.866 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 7.519 -6.546 10.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.130 4.130 4 C -0.083 4.083 5 C 0.002 3.998 6 N -0.385 5.385 7 C 0.194 3.806 8 C -0.341 4.341 9 C 0.131 3.869 10 C -0.398 4.398 11 H 0.120 0.880 12 C -0.171 4.171 13 N -0.330 5.330 14 Si 0.753 3.247 15 H -0.181 1.181 16 H -0.192 1.192 17 H -0.174 1.174 18 C -0.188 4.188 19 C -0.062 4.062 20 C -0.254 4.254 21 N 0.474 4.526 22 O -0.469 6.469 23 O -0.488 6.488 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.263 0.737 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.152 0.848 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.937 7.198 -7.135 10.552 hybrid contribution -0.201 0.277 0.897 0.960 sum -3.138 7.475 -6.238 10.229 Atomic orbital electron populations 1.22380 0.87130 1.02382 1.00397 1.61872 1.07902 1.14043 1.42978 1.22494 1.01558 0.88575 1.00348 1.22239 0.95658 0.98845 0.91556 1.21167 0.92001 0.96236 0.90434 1.45989 1.06432 1.59399 1.26667 1.17221 0.84091 0.88797 0.90536 1.20321 0.92100 1.16113 1.05558 1.17653 0.90887 0.88206 0.90130 1.21489 0.97275 1.06402 1.14599 0.87966 1.27878 1.00197 0.94396 0.94631 1.69104 1.26428 1.10168 1.27338 0.85879 0.78594 0.80309 0.79922 1.18077 1.19225 1.17357 1.21190 0.99453 1.02782 0.95359 1.20004 0.89497 0.97775 0.98945 1.19611 0.89303 1.17065 0.99403 1.49898 1.01854 0.99477 1.01417 1.96106 1.82822 1.30630 1.37347 1.95654 0.99568 1.70390 1.83151 0.95653 0.91313 0.91253 0.90647 0.91404 0.95586 0.90136 0.94148 0.92442 0.91566 0.73667 0.86682 0.88237 0.84841 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.57 60.07 0.57 0.83 16 2 N -0.54 -6.68 5.02 -251.26 -1.26 -7.94 16 3 C 0.02 0.20 9.32 60.07 0.56 0.76 16 4 C 0.05 0.63 5.07 -3.83 -0.02 0.61 16 5 C 0.13 2.07 4.88 -4.04 -0.02 2.05 16 6 N -0.74 -14.95 5.62 -58.68 -0.33 -15.28 16 7 C 0.30 6.88 6.63 -83.85 -0.56 6.33 16 8 C -0.31 -6.83 9.08 -38.51 -0.35 -7.18 16 9 C 0.14 3.05 5.62 -106.82 -0.60 2.45 16 10 C -0.37 -7.65 9.32 -35.44 -0.33 -7.98 16 11 H 0.10 1.93 7.98 -52.49 -0.42 1.52 16 12 C 0.06 1.16 5.36 -15.19 -0.08 1.08 16 13 N -0.71 -14.05 10.93 55.98 0.61 -13.44 16 14 Si 0.93 13.77 29.67 -169.99 -5.04 8.72 16 15 H -0.26 -3.79 7.11 56.52 0.40 -3.39 16 16 H -0.27 -3.89 7.11 56.52 0.40 -3.49 16 17 H -0.25 -3.67 7.11 56.52 0.40 -3.27 16 18 C -0.17 -3.75 8.72 -39.04 -0.34 -4.10 16 19 C -0.04 -0.98 9.49 -40.06 -0.38 -1.36 16 20 C -0.15 -3.60 6.92 -79.32 -0.55 -4.15 16 21 N 0.06 1.56 4.98 34.27 0.17 1.73 16 22 O -0.31 -8.59 19.14 -31.56 -0.60 -9.20 16 23 O -0.35 -9.05 16.29 -31.57 -0.51 -9.56 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 28 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 31 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.06 0.90 6.13 -51.93 -0.32 0.58 16 33 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.41 8.78 4.67 -42.10 -0.20 8.59 16 35 H 0.12 2.29 6.72 -52.49 -0.35 1.94 16 36 H 0.30 5.21 8.27 -40.82 -0.34 4.88 16 37 H 0.13 2.93 6.07 -52.48 -0.32 2.61 16 38 H 0.12 2.70 7.57 -52.48 -0.40 2.30 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -27.14 321.78 -9.06 -36.20 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -4.84 Total: 14.59 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.09 Total: -10.68 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.81 Total: -34.92 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.12 Total: -18.76 kcal Atomic # 14 Polarization: 13.77 SS G_CDS: -5.04 Total: 8.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.14 -9.06 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161671250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.033 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds