Wall clock time and date at job start Tue Mar 31 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46906 * 110.99896 * 2 1 4 4 C 1.46895 * 110.99799 * 123.95443 * 2 1 3 5 5 C 1.53001 * 109.46968 * 169.99987 * 4 2 1 6 6 N 1.46496 * 109.47366 * 179.97438 * 5 4 2 7 7 C 1.39675 * 120.00367 * 179.97438 * 6 5 4 8 8 C 1.38167 * 119.98651 * 6.08200 * 7 6 5 9 9 C 1.41132 * 119.50497 * 180.02562 * 8 7 6 10 10 C 1.40362 * 120.25338 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00333 * 23.96888 * 10 9 8 12 12 C 1.46528 * 119.99840 * 203.97310 * 10 9 8 13 13 N 1.29509 * 119.99925 * 15.29774 * 12 10 9 14 14 Si 1.86802 * 120.00065 * 195.29880 * 12 10 9 15 15 H 1.48507 * 109.46857 * 89.99804 * 14 12 10 16 16 H 1.48492 * 109.46949 * 209.99855 * 14 12 10 17 17 H 1.48501 * 109.46801 * 330.00175 * 14 12 10 18 18 C 1.41343 * 119.49319 * 359.73317 * 9 8 7 19 19 C 1.36482 * 119.95859 * 0.52265 * 18 9 8 20 20 C 1.38658 * 120.50504 * 359.47325 * 19 18 9 21 21 N 1.48022 * 119.74185 * 180.25880 * 20 19 18 22 22 O 1.31693 * 120.00200 * 353.68438 * 21 20 19 23 23 O 1.31704 * 119.99809 * 173.68900 * 21 20 19 24 24 H 1.09001 * 109.46682 * 296.04889 * 1 2 3 25 25 H 1.08998 * 109.47022 * 56.04551 * 1 2 3 26 26 H 1.08995 * 109.46977 * 176.04752 * 1 2 3 27 27 H 1.08993 * 109.46688 * 183.95654 * 3 2 1 28 28 H 1.08996 * 109.46967 * 303.95586 * 3 2 1 29 29 H 1.08999 * 109.47134 * 63.95394 * 3 2 1 30 30 H 1.08994 * 109.47545 * 50.00305 * 4 2 1 31 31 H 1.09002 * 109.47342 * 289.99504 * 4 2 1 32 32 H 1.09005 * 109.47031 * 59.99495 * 5 4 2 33 33 H 1.08994 * 109.47295 * 300.00072 * 5 4 2 34 34 H 0.96995 * 120.00082 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.25191 * 359.97438 * 8 7 6 36 36 H 0.97002 * 119.99874 * 180.02562 * 13 12 10 37 37 H 1.08005 * 120.01829 * 180.29101 * 18 9 8 38 38 H 1.08008 * 119.74834 * 179.75433 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0296 -1.7187 2.1050 7 6 5.3919 -2.0190 2.1742 8 6 6.2637 -1.4912 1.2413 9 6 7.6381 -1.8018 1.3204 10 6 8.5375 -1.2747 0.3806 11 1 8.2951 -0.3643 -0.1474 12 6 9.8055 -1.9597 0.1157 13 7 9.9757 -3.1819 0.5089 14 14 11.1765 -1.0701 -0.7889 15 1 12.0449 -0.3713 0.1923 16 1 11.9849 -2.0537 -1.5531 17 1 10.5894 -0.0780 -1.7250 18 6 8.1027 -2.6436 2.3564 19 6 7.2221 -3.1575 3.2637 20 6 5.8719 -2.8518 3.1851 21 7 4.9325 -3.4139 4.1814 22 8 5.3565 -4.2976 5.0609 23 8 3.6726 -3.0303 4.1882 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8724 0.9233 30 1 1.5091 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0194 0.9322 33 1 3.7024 -1.4965 0.0451 34 1 3.4311 -2.0162 2.8080 35 1 5.8960 -0.8465 0.4567 36 1 10.8152 -3.6352 0.3338 37 1 9.1535 -2.8831 2.4278 38 1 7.5802 -3.8036 4.0516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161671250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:41 Heat of formation + Delta-G solvation = 21.102630 kcal Electronic energy + Delta-G solvation = -21438.958798 eV Core-core repulsion = 18091.403713 eV Total energy + Delta-G solvation = -3347.555085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65804 -38.83158 -38.48379 -36.80702 -35.59387 -34.54152 -32.59129 -31.44706 -28.96857 -28.59337 -28.40264 -25.70774 -24.90164 -22.97347 -22.57411 -21.66971 -19.86936 -18.89578 -18.48458 -17.54737 -17.01161 -16.87694 -16.73819 -16.30633 -15.84154 -15.44613 -15.13729 -15.01365 -14.65468 -14.60587 -14.04174 -13.78328 -13.29983 -13.20129 -13.00927 -12.89464 -12.83906 -12.63194 -12.40361 -12.17257 -11.98220 -11.79282 -11.62192 -11.46415 -11.42649 -11.26307 -10.85963 -10.06795 -9.41006 -9.25197 -8.54512 -6.89058 -1.06900 0.77819 1.08735 1.11332 1.40426 1.55966 1.62769 2.08384 2.31091 2.36862 3.21083 3.27935 3.82296 3.94840 4.01016 4.27581 4.41075 4.41701 4.47562 4.50418 4.60363 4.65527 4.68333 4.79508 4.84458 4.91478 4.92156 4.99055 5.05990 5.11863 5.41738 5.55400 5.59168 5.74363 5.91561 5.99451 6.04168 6.22355 6.29985 6.55080 6.61861 6.96185 7.62768 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.005298 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.349582 B = 5283.453888 C = 7278.146098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.552 5.552 3 C 0.017 3.983 4 C 0.053 3.947 5 C 0.129 3.871 6 N -0.737 5.737 7 C 0.277 3.723 8 C -0.303 4.303 9 C 0.083 3.917 10 C -0.316 4.316 11 H 0.132 0.868 12 C 0.022 3.978 13 N -0.721 5.721 14 Si 1.009 2.991 15 H -0.254 1.254 16 H -0.261 1.261 17 H -0.240 1.240 18 C -0.134 4.134 19 C -0.079 4.079 20 C -0.131 4.131 21 N 0.054 4.946 22 O -0.411 6.411 23 O -0.397 6.397 24 H 0.027 0.973 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.406 0.594 35 H 0.138 0.862 36 H 0.324 0.676 37 H 0.141 0.859 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 10.414 -11.050 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.277 5.277 3 C -0.131 4.131 4 C -0.075 4.075 5 C 0.004 3.996 6 N -0.382 5.382 7 C 0.167 3.833 8 C -0.331 4.331 9 C 0.078 3.922 10 C -0.341 4.341 11 H 0.150 0.850 12 C -0.210 4.210 13 N -0.340 5.340 14 Si 0.826 3.174 15 H -0.178 1.178 16 H -0.185 1.185 17 H -0.163 1.163 18 C -0.156 4.156 19 C -0.099 4.099 20 C -0.247 4.247 21 N 0.440 4.560 22 O -0.541 6.541 23 O -0.522 6.522 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.256 0.744 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.154 9.952 -11.432 15.158 hybrid contribution -0.473 -0.335 1.607 1.708 sum -0.627 9.617 -9.825 13.763 Atomic orbital electron populations 1.22459 0.85704 1.02875 1.01376 1.61898 1.09269 1.14813 1.41698 1.22559 1.01394 0.87863 1.01302 1.22081 0.94202 0.98964 0.92278 1.21316 0.93464 0.95989 0.88783 1.46146 1.05622 1.59075 1.27384 1.17412 0.85473 0.89651 0.90719 1.20473 0.91661 1.15568 1.05409 1.17969 0.91906 0.90458 0.91869 1.22368 0.96495 1.04965 1.10239 0.84998 1.28921 1.01782 0.94951 0.95308 1.69078 1.28151 1.11423 1.25319 0.84735 0.75024 0.79088 0.78600 1.17794 1.18546 1.16258 1.21384 0.99392 1.00411 0.94422 1.20045 0.89607 0.99907 1.00341 1.20153 0.89701 1.16005 0.98836 1.49846 1.01971 1.01320 1.02896 1.96033 1.83222 1.34362 1.40439 1.95571 1.00364 1.71941 1.84373 0.95408 0.89372 0.91265 0.91047 0.89413 0.95499 0.90840 0.94592 0.91233 0.91730 0.74448 0.84432 0.86183 0.84147 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.57 127.69 1.22 1.66 16 2 N -0.55 -12.73 5.02 -948.85 -4.76 -17.49 16 3 C 0.02 0.32 9.32 127.69 1.19 1.51 16 4 C 0.05 1.48 5.07 86.30 0.44 1.92 16 5 C 0.13 4.11 4.88 86.38 0.42 4.54 16 6 N -0.74 -30.76 5.62 -339.56 -1.91 -32.67 16 7 C 0.28 12.84 6.63 38.18 0.25 13.09 16 8 C -0.30 -12.57 9.08 22.96 0.21 -12.36 16 9 C 0.08 3.48 5.62 -21.29 -0.12 3.36 16 10 C -0.32 -11.23 9.32 24.95 0.23 -10.99 16 11 H 0.13 4.01 7.98 -2.91 -0.02 3.99 16 12 C 0.02 0.71 5.36 87.20 0.47 1.18 16 13 N -0.72 -25.21 10.93 23.21 0.25 -24.95 16 14 Si 1.01 22.56 29.67 68.60 2.04 24.59 16 15 H -0.25 -5.70 7.11 99.48 0.71 -4.99 16 16 H -0.26 -5.70 7.11 99.48 0.71 -4.99 16 17 H -0.24 -5.08 7.11 99.48 0.71 -4.37 16 18 C -0.13 -5.89 8.72 22.62 0.20 -5.70 16 19 C -0.08 -3.84 9.49 21.96 0.21 -3.63 16 20 C -0.13 -6.83 6.92 36.78 0.25 -6.58 16 21 N 0.05 3.16 4.98 -45.50 -0.23 2.93 16 22 O -0.41 -25.35 19.14 3.53 0.07 -25.28 16 23 O -0.40 -22.75 16.29 3.51 0.06 -22.69 16 24 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 26 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.07 1.42 6.47 -2.39 -0.02 1.40 16 28 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 29 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 31 H 0.04 1.02 8.12 -2.39 -0.02 1.01 16 32 H 0.07 2.06 6.13 -2.38 -0.01 2.04 16 33 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 34 H 0.41 18.42 4.67 -112.88 -0.53 17.90 16 35 H 0.14 4.98 6.72 -2.91 -0.02 4.96 16 36 H 0.32 9.54 8.27 -92.71 -0.77 8.78 16 37 H 0.14 5.88 6.07 -2.91 -0.02 5.86 16 38 H 0.11 5.58 7.57 -2.91 -0.02 5.55 16 Total: -1.00 -62.51 321.78 1.05 -61.46 By element: Atomic # 1 Polarization: 45.55 SS G_CDS: 0.56 Total: 46.11 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.97 Total: -12.01 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -6.64 Total: -72.18 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: 0.12 Total: -47.97 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: 2.04 Total: 24.59 kcal Total: -62.51 1.05 -61.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161671250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.562 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds