Wall clock time and date at job start Tue Mar 31 2020 01:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00417 * 2 1 4 4 C 1.46901 * 110.99531 * 123.95340 * 2 1 3 5 5 C 1.53006 * 109.47062 * 169.99549 * 4 2 1 6 6 N 1.46499 * 109.47137 * 179.97438 * 5 4 2 7 7 C 1.37653 * 119.99766 * 179.97438 * 6 5 4 8 8 C 1.40184 * 119.81315 * 0.02562 * 7 6 5 9 9 C 1.35805 * 120.18777 * 179.97438 * 8 7 6 10 10 C 1.41746 * 119.80644 * 0.02562 * 9 8 7 11 11 C 1.39521 * 120.18553 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00375 * 142.47009 * 11 10 9 13 13 C 1.46593 * 119.99785 * 322.47422 * 11 10 9 14 14 N 1.29496 * 120.00050 * 350.42517 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 170.42846 * 13 11 10 16 16 H 1.48492 * 109.47148 * 89.99539 * 15 13 11 17 17 H 1.48501 * 109.46885 * 209.99832 * 15 13 11 18 18 H 1.48500 * 109.46745 * 329.99544 * 15 13 11 19 19 C 1.41720 * 119.63105 * 0.02562 * 10 9 8 20 20 N 1.48018 * 120.09380 * 180.02562 * 19 10 9 21 21 O 1.31695 * 119.99561 * 173.59058 * 20 19 10 22 22 O 1.31697 * 120.00110 * 353.58554 * 20 19 10 23 23 C 1.35829 * 119.80210 * 359.68588 * 19 10 9 24 24 H 1.08995 * 109.47238 * 296.05037 * 1 2 3 25 25 H 1.09004 * 109.46621 * 56.04851 * 1 2 3 26 26 H 1.09004 * 109.47572 * 176.04368 * 1 2 3 27 27 H 1.08993 * 109.47283 * 183.95020 * 3 2 1 28 28 H 1.08994 * 109.46838 * 303.95275 * 3 2 1 29 29 H 1.09006 * 109.46689 * 63.95100 * 3 2 1 30 30 H 1.09002 * 109.47115 * 49.99957 * 4 2 1 31 31 H 1.08995 * 109.47255 * 289.99982 * 4 2 1 32 32 H 1.08995 * 109.47440 * 300.00321 * 5 4 2 33 33 H 1.09002 * 109.46822 * 60.00229 * 5 4 2 34 34 H 0.96997 * 120.00049 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.90315 * 359.97438 * 8 7 6 36 36 H 1.07999 * 120.09141 * 180.02562 * 9 8 7 37 37 H 0.96996 * 119.99981 * 180.02562 * 14 13 11 38 38 H 1.08002 * 119.89997 * 180.29082 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5043 -0.9555 0.9704 6 7 4.0293 -1.7189 2.1052 7 6 5.3719 -2.0150 2.1734 8 6 6.2333 -1.5836 1.1550 9 6 7.5593 -1.8710 1.2148 10 6 8.0713 -2.6098 2.3108 11 6 9.4323 -2.9091 2.3805 12 1 9.9403 -2.8944 3.3334 13 6 10.1727 -3.2433 1.1602 14 7 9.5357 -3.4430 0.0506 15 14 12.0350 -3.3813 1.2059 16 1 12.4201 -4.7794 1.5253 17 1 12.5918 -3.0045 -0.1182 18 1 12.5734 -2.4694 2.2470 19 6 7.1932 -3.0429 3.3354 20 7 7.7170 -3.8146 4.4847 21 8 6.9263 -4.1073 5.4965 22 8 8.9736 -4.2086 4.4956 23 6 5.8707 -2.7418 3.2629 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9162 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.5087 -1.7407 1.1756 31 1 1.7974 -0.2248 2.0628 32 1 3.7023 -1.4967 0.0453 33 1 3.9909 0.0191 0.9324 34 1 3.4308 -2.0163 2.8082 35 1 5.8414 -1.0212 0.3206 36 1 8.2216 -1.5376 0.4296 37 1 10.0255 -3.6645 -0.7568 38 1 5.2008 -3.0670 4.0452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161671535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:45 Heat of formation + Delta-G solvation = 44.740486 kcal Electronic energy + Delta-G solvation = -21222.170545 eV Core-core repulsion = 17875.640475 eV Total energy + Delta-G solvation = -3346.530070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.87821 -37.88398 -36.52061 -35.23361 -33.70661 -32.35897 -30.48790 -30.27387 -28.35039 -27.81243 -25.73983 -24.06372 -23.68177 -21.76737 -21.05834 -19.94081 -18.16784 -17.02473 -16.36256 -15.83403 -15.74936 -15.58496 -15.42120 -14.60405 -14.34214 -14.22884 -14.01565 -13.86186 -13.04928 -12.97775 -12.63126 -12.37537 -12.31974 -11.97840 -11.83507 -11.75075 -11.51134 -11.43215 -11.12543 -10.96214 -10.50257 -10.34681 -9.88500 -9.32244 -9.22839 -8.93584 -8.76997 -8.63716 -8.25586 -7.59306 -6.89557 -4.71289 1.06953 2.46954 2.80107 2.85580 2.89110 2.96649 3.25000 3.53352 3.56102 4.02161 4.32164 4.77547 4.90318 4.95676 5.02698 5.12145 5.30286 5.38001 5.41135 5.59157 5.68368 5.83011 5.84243 5.91344 5.99331 6.23781 6.35830 6.45817 6.71867 6.74081 6.79160 6.84608 7.08532 7.32295 7.40726 7.60901 7.93375 8.01102 8.11333 8.23983 8.44556 8.96286 9.31718 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.004158 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.359756 B = 6732.531091 C = 7896.137611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.019 3.981 4 C 0.044 3.956 5 C 0.137 3.863 6 N -0.750 5.750 7 C 0.124 3.876 8 C -0.136 4.136 9 C -0.085 4.085 10 C 0.079 3.921 11 C -0.328 4.328 12 H 0.124 0.876 13 C 0.059 3.941 14 N -0.721 5.721 15 Si 0.937 3.063 16 H -0.256 1.256 17 H -0.269 1.269 18 H -0.248 1.248 19 C -0.062 4.062 20 N 0.039 4.961 21 O -0.370 6.370 22 O -0.291 6.291 23 C -0.134 4.134 24 H 0.025 0.975 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.391 0.609 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.303 0.697 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.332 8.731 -7.923 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.129 4.129 4 C -0.084 4.084 5 C 0.012 3.988 6 N -0.386 5.386 7 C 0.022 3.978 8 C -0.157 4.157 9 C -0.105 4.105 10 C 0.073 3.927 11 C -0.357 4.357 12 H 0.142 0.858 13 C -0.172 4.172 14 N -0.343 5.343 15 Si 0.758 3.242 16 H -0.180 1.180 17 H -0.194 1.194 18 H -0.171 1.171 19 C -0.165 4.165 20 N 0.451 4.549 21 O -0.508 6.508 22 O -0.447 6.447 23 C -0.159 4.159 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.224 0.776 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.376 8.631 -8.817 15.497 hybrid contribution 0.122 -0.083 1.167 1.176 sum -9.254 8.547 -7.650 14.738 Atomic orbital electron populations 1.22382 0.87059 1.02388 1.00470 1.61866 1.07959 1.14137 1.42924 1.22492 1.01507 0.88513 1.00435 1.22268 0.95828 0.98698 0.91589 1.21049 0.91711 0.95759 0.90286 1.43504 1.05586 1.63523 1.25958 1.17033 0.83810 1.01485 0.95422 1.20442 0.93784 1.03553 0.97896 1.20985 0.94180 0.97523 0.97860 1.17238 0.92807 0.92310 0.90339 1.21977 0.92903 1.25683 0.95162 0.85835 1.27941 1.03656 0.91949 0.93653 1.69057 1.41337 1.22565 1.01366 0.85793 0.77833 0.81258 0.79340 1.17976 1.19409 1.17092 1.19400 0.92890 1.11375 0.92867 1.49605 1.01602 1.01386 1.02279 1.96044 1.55721 1.71147 1.27913 1.96027 0.97380 1.63710 1.87583 1.19303 0.93685 1.04133 0.98823 0.95670 0.91257 0.91247 0.90682 0.91354 0.95557 0.90242 0.94300 0.92015 0.93006 0.77620 0.87263 0.85550 0.88402 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.57 60.06 0.57 0.78 16 2 N -0.54 -5.48 5.02 -251.26 -1.26 -6.74 16 3 C 0.02 0.17 9.32 60.06 0.56 0.73 16 4 C 0.04 0.47 5.07 -3.82 -0.02 0.45 16 5 C 0.14 1.78 4.80 -4.04 -0.02 1.76 16 6 N -0.75 -11.73 5.65 -58.49 -0.33 -12.06 16 7 C 0.12 2.47 6.67 -83.81 -0.56 1.91 16 8 C -0.14 -2.65 9.21 -39.72 -0.37 -3.02 16 9 C -0.09 -1.86 8.62 -39.11 -0.34 -2.20 16 10 C 0.08 1.96 5.48 -106.75 -0.58 1.37 16 11 C -0.33 -8.09 7.71 -35.74 -0.28 -8.37 16 12 H 0.12 3.19 6.05 -52.49 -0.32 2.87 16 13 C 0.06 1.26 5.39 -15.17 -0.08 1.18 16 14 N -0.72 -15.35 11.55 55.99 0.65 -14.70 16 15 Si 0.94 16.31 29.65 -169.99 -5.04 11.27 16 16 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 17 H -0.27 -4.33 7.11 56.52 0.40 -3.93 16 18 H -0.25 -4.34 7.11 56.52 0.40 -3.93 16 19 C -0.06 -1.62 6.89 -79.48 -0.55 -2.17 16 20 N 0.04 1.13 4.98 34.19 0.17 1.30 16 21 O -0.37 -11.06 19.14 -31.56 -0.60 -11.66 16 22 O -0.29 -8.64 16.32 -31.57 -0.52 -9.15 16 23 C -0.13 -3.11 9.35 -39.73 -0.37 -3.48 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.07 0.69 6.47 -51.93 -0.34 0.36 16 28 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 31 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 32 H 0.06 0.86 7.91 -51.93 -0.41 0.45 16 33 H 0.05 0.67 6.32 -51.93 -0.33 0.34 16 34 H 0.39 5.55 8.46 -40.82 -0.35 5.21 16 35 H 0.11 1.83 6.66 -52.49 -0.35 1.48 16 36 H 0.13 2.63 6.91 -52.49 -0.36 2.27 16 37 H 0.30 5.59 8.27 -40.82 -0.34 5.25 16 38 H 0.12 2.64 7.55 -52.49 -0.40 2.24 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -30.27 323.13 -9.02 -39.29 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.93 Total: 8.64 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.03 Total: -11.05 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: -0.77 Total: -32.21 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.12 Total: -20.81 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.04 Total: 11.27 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.27 -9.02 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161671535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.034 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds