Wall clock time and date at job start Tue Mar 31 2020 01:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00417 * 2 1 4 4 C 1.46901 * 110.99531 * 123.95340 * 2 1 3 5 5 C 1.53006 * 109.47062 * 169.99549 * 4 2 1 6 6 N 1.46499 * 109.47137 * 179.97438 * 5 4 2 7 7 C 1.37653 * 119.99766 * 179.97438 * 6 5 4 8 8 C 1.40184 * 119.81315 * 0.02562 * 7 6 5 9 9 C 1.35805 * 120.18777 * 179.97438 * 8 7 6 10 10 C 1.41746 * 119.80644 * 0.02562 * 9 8 7 11 11 C 1.39521 * 120.18553 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00375 * 142.47009 * 11 10 9 13 13 C 1.46593 * 119.99785 * 322.47422 * 11 10 9 14 14 N 1.29496 * 120.00050 * 350.42517 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 170.42846 * 13 11 10 16 16 H 1.48492 * 109.47148 * 89.99539 * 15 13 11 17 17 H 1.48501 * 109.46885 * 209.99832 * 15 13 11 18 18 H 1.48500 * 109.46745 * 329.99544 * 15 13 11 19 19 C 1.41720 * 119.63105 * 0.02562 * 10 9 8 20 20 N 1.48018 * 120.09380 * 180.02562 * 19 10 9 21 21 O 1.31695 * 119.99561 * 173.59058 * 20 19 10 22 22 O 1.31697 * 120.00110 * 353.58554 * 20 19 10 23 23 C 1.35829 * 119.80210 * 359.68588 * 19 10 9 24 24 H 1.08995 * 109.47238 * 296.05037 * 1 2 3 25 25 H 1.09004 * 109.46621 * 56.04851 * 1 2 3 26 26 H 1.09004 * 109.47572 * 176.04368 * 1 2 3 27 27 H 1.08993 * 109.47283 * 183.95020 * 3 2 1 28 28 H 1.08994 * 109.46838 * 303.95275 * 3 2 1 29 29 H 1.09006 * 109.46689 * 63.95100 * 3 2 1 30 30 H 1.09002 * 109.47115 * 49.99957 * 4 2 1 31 31 H 1.08995 * 109.47255 * 289.99982 * 4 2 1 32 32 H 1.08995 * 109.47440 * 300.00321 * 5 4 2 33 33 H 1.09002 * 109.46822 * 60.00229 * 5 4 2 34 34 H 0.96997 * 120.00049 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.90315 * 359.97438 * 8 7 6 36 36 H 1.07999 * 120.09141 * 180.02562 * 9 8 7 37 37 H 0.96996 * 119.99981 * 180.02562 * 14 13 11 38 38 H 1.08002 * 119.89997 * 180.29082 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5043 -0.9555 0.9704 6 7 4.0293 -1.7189 2.1052 7 6 5.3719 -2.0150 2.1734 8 6 6.2333 -1.5836 1.1550 9 6 7.5593 -1.8710 1.2148 10 6 8.0713 -2.6098 2.3108 11 6 9.4323 -2.9091 2.3805 12 1 9.9403 -2.8944 3.3334 13 6 10.1727 -3.2433 1.1602 14 7 9.5357 -3.4430 0.0506 15 14 12.0350 -3.3813 1.2059 16 1 12.4201 -4.7794 1.5253 17 1 12.5918 -3.0045 -0.1182 18 1 12.5734 -2.4694 2.2470 19 6 7.1932 -3.0429 3.3354 20 7 7.7170 -3.8146 4.4847 21 8 6.9263 -4.1073 5.4965 22 8 8.9736 -4.2086 4.4956 23 6 5.8707 -2.7418 3.2629 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9162 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.5087 -1.7407 1.1756 31 1 1.7974 -0.2248 2.0628 32 1 3.7023 -1.4967 0.0453 33 1 3.9909 0.0191 0.9324 34 1 3.4308 -2.0163 2.8082 35 1 5.8414 -1.0212 0.3206 36 1 8.2216 -1.5376 0.4296 37 1 10.0255 -3.6645 -0.7568 38 1 5.2008 -3.0670 4.0452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161671535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:44 Heat of formation + Delta-G solvation = 23.187075 kcal Electronic energy + Delta-G solvation = -21223.105171 eV Core-core repulsion = 17875.640475 eV Total energy + Delta-G solvation = -3347.464697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55399 -38.93044 -38.03963 -36.92596 -35.38861 -34.13295 -32.06243 -31.96951 -29.80030 -28.47043 -27.38298 -25.86731 -24.79360 -23.39978 -22.17489 -21.52047 -20.06144 -18.64101 -18.04737 -17.45824 -16.87521 -16.75725 -16.63306 -16.06185 -15.85880 -15.48614 -15.32189 -15.10772 -14.64258 -14.58393 -14.02770 -13.74183 -13.38946 -13.25225 -13.08735 -12.89159 -12.71333 -12.58528 -12.40914 -12.19646 -12.00878 -11.92907 -11.52904 -11.14443 -10.98681 -10.92745 -10.57131 -10.07520 -9.43644 -9.36092 -8.56726 -6.67019 -0.94585 0.76051 1.06339 1.31122 1.46449 1.52016 1.59942 2.09182 2.25230 2.45824 3.10071 3.26433 3.88315 4.06134 4.09226 4.24566 4.30904 4.36288 4.47241 4.53062 4.54911 4.66973 4.71089 4.72061 4.87402 4.98642 5.02766 5.03389 5.08677 5.11385 5.30272 5.48933 5.59843 5.77114 5.98675 6.00504 6.04713 6.06030 6.35587 6.60757 6.88103 7.17475 7.49383 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.004158 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.359756 B = 6732.531091 C = 7896.137611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.016 3.984 4 C 0.050 3.950 5 C 0.132 3.868 6 N -0.732 5.732 7 C 0.196 3.804 8 C -0.139 4.139 9 C -0.058 4.058 10 C 0.016 3.984 11 C -0.256 4.256 12 H 0.107 0.893 13 C 0.020 3.980 14 N -0.695 5.695 15 Si 1.003 2.997 16 H -0.265 1.265 17 H -0.226 1.226 18 H -0.253 1.253 19 C -0.031 4.031 20 N 0.019 4.981 21 O -0.498 6.498 22 O -0.416 6.416 23 C -0.214 4.214 24 H 0.028 0.972 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.333 0.667 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 11.730 -14.354 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.280 5.280 3 C -0.131 4.131 4 C -0.078 4.078 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.087 3.913 8 C -0.160 4.160 9 C -0.078 4.078 10 C 0.010 3.990 11 C -0.287 4.287 12 H 0.125 0.875 13 C -0.212 4.212 14 N -0.318 5.318 15 Si 0.819 3.181 16 H -0.190 1.190 17 H -0.148 1.148 18 H -0.176 1.176 19 C -0.146 4.146 20 N 0.381 4.619 21 O -0.603 6.603 22 O -0.537 6.537 23 C -0.241 4.241 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.208 11.459 -14.970 20.981 hybrid contribution 0.049 -0.541 2.091 2.160 sum -9.159 10.918 -12.879 19.208 Atomic orbital electron populations 1.22436 0.85866 1.02891 1.01182 1.61882 1.09131 1.14717 1.42317 1.22544 1.01412 0.88075 1.01117 1.22150 0.94132 0.99294 0.92228 1.21303 0.93485 0.95680 0.88727 1.43864 1.04214 1.61535 1.26841 1.17284 0.85466 0.95597 0.92911 1.20854 0.92767 1.03630 0.98743 1.21214 0.95517 0.95342 0.95745 1.17741 0.93042 0.95761 0.92409 1.22753 0.93363 1.16051 0.96533 0.87546 1.28807 1.08021 0.92106 0.92279 1.68924 1.43971 1.16801 1.02074 0.84874 0.71291 0.80574 0.81358 1.19023 1.14769 1.17595 1.19978 0.94347 1.09090 0.91151 1.49362 1.01243 1.07477 1.03785 1.95898 1.56620 1.77169 1.30643 1.95850 0.99148 1.69885 1.88790 1.19208 0.92957 1.10338 1.01618 0.95355 0.90082 0.91000 0.90864 0.90096 0.95468 0.89926 0.94009 0.91567 0.91650 0.76522 0.82524 0.83343 0.85256 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.57 127.69 1.22 1.53 16 2 N -0.56 -9.02 5.02 -948.85 -4.76 -13.78 16 3 C 0.02 0.23 9.32 127.69 1.19 1.42 16 4 C 0.05 0.88 5.07 86.30 0.44 1.32 16 5 C 0.13 2.79 4.80 86.38 0.41 3.20 16 6 N -0.73 -20.59 5.65 -338.95 -1.92 -22.50 16 7 C 0.20 7.33 6.67 39.17 0.26 7.59 16 8 C -0.14 -4.78 9.21 22.18 0.20 -4.57 16 9 C -0.06 -2.29 8.62 22.57 0.19 -2.10 16 10 C 0.02 0.80 5.48 -21.24 -0.12 0.68 16 11 C -0.26 -12.51 7.71 24.76 0.19 -12.32 16 12 H 0.11 5.74 6.05 -2.91 -0.02 5.72 16 13 C 0.02 0.79 5.39 87.22 0.47 1.26 16 14 N -0.70 -25.63 11.55 23.22 0.27 -25.36 16 15 Si 1.00 29.78 29.65 68.60 2.03 31.81 16 16 H -0.27 -8.48 7.11 99.48 0.71 -7.77 16 17 H -0.23 -5.30 7.11 99.48 0.71 -4.59 16 18 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 19 C -0.03 -1.74 6.89 36.68 0.25 -1.49 16 20 N 0.02 1.25 4.98 -45.75 -0.23 1.02 16 21 O -0.50 -35.13 19.14 3.52 0.07 -35.06 16 22 O -0.42 -28.32 16.32 3.52 0.06 -28.26 16 23 C -0.21 -10.44 9.35 22.17 0.21 -10.23 16 24 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.08 0.84 8.12 -2.38 -0.02 0.82 16 26 H 0.07 0.88 8.12 -2.38 -0.02 0.86 16 27 H 0.07 1.02 6.47 -2.39 -0.02 1.01 16 28 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 29 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 31 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.07 1.45 7.91 -2.39 -0.02 1.44 16 33 H 0.07 1.31 6.32 -2.39 -0.02 1.29 16 34 H 0.40 10.56 8.46 -92.71 -0.78 9.78 16 35 H 0.16 4.04 6.66 -2.91 -0.02 4.02 16 36 H 0.15 5.20 6.91 -2.91 -0.02 5.18 16 37 H 0.33 9.87 8.27 -92.71 -0.77 9.10 16 38 H 0.10 5.16 7.55 -2.91 -0.02 5.14 16 Total: -1.00 -78.02 323.13 0.76 -77.26 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.31 Total: 28.58 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.93 Total: -13.71 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -6.64 Total: -60.62 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: 0.12 Total: -63.32 kcal Atomic # 14 Polarization: 29.78 SS G_CDS: 2.03 Total: 31.81 kcal Total: -78.02 0.76 -77.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161671535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.450 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds