Wall clock time and date at job start Tue Mar 31 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34600 * 119.48227 * 2 1 4 4 C 1.37990 * 120.46090 * 180.28149 * 3 2 1 5 5 C 1.47456 * 120.25848 * 179.71544 * 4 3 2 6 6 O 1.21602 * 120.00101 * 359.72452 * 5 4 3 7 7 N 1.34777 * 120.00227 * 179.45359 * 5 4 3 8 8 C 1.46496 * 120.00344 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47401 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47091 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46881 * 179.97438 * 10 9 8 12 12 C 1.36941 * 120.00096 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99808 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99824 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00315 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99648 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47377 * 59.99906 * 16 14 12 18 18 H 1.48497 * 109.47214 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47213 * 300.00375 * 16 14 12 20 20 C 1.41591 * 119.48517 * 359.44556 * 4 3 2 21 21 C 1.35977 * 119.00993 * 0.27221 * 20 4 3 22 22 C 1.34535 * 119.47711 * 179.72297 * 2 1 3 23 23 O 1.21968 * 119.75194 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47436 * 180.27800 * 1 2 3 25 25 H 1.09000 * 109.47085 * 300.28177 * 1 2 3 26 26 H 1.09004 * 109.46704 * 60.27988 * 1 2 3 27 27 H 1.08000 * 119.76605 * 359.97438 * 3 2 1 28 28 H 0.97004 * 119.99647 * 359.97438 * 7 5 4 29 29 H 1.09007 * 109.47081 * 299.99675 * 8 7 5 30 30 H 1.08993 * 109.47302 * 59.99555 * 8 7 5 31 31 H 1.09007 * 109.46761 * 299.99900 * 9 8 7 32 32 H 1.08997 * 109.46989 * 59.99086 * 9 8 7 33 33 H 1.08991 * 109.47132 * 299.99491 * 10 9 8 34 34 H 1.09001 * 109.47155 * 60.00046 * 10 9 8 35 35 H 0.97005 * 120.00177 * 0.02562 * 11 10 9 36 36 H 0.97000 * 119.99802 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.50197 * 180.29763 * 20 4 3 38 38 H 1.07998 * 120.25015 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5071 1.1953 -0.0058 5 6 4.2283 2.4814 -0.0121 6 8 3.6071 3.5268 -0.0173 7 7 5.5759 2.4985 -0.0067 8 6 6.2924 3.7763 -0.0124 9 6 7.8001 3.5158 -0.0038 10 6 8.5483 4.8503 -0.0104 11 7 9.9919 4.6008 -0.0015 12 6 10.8686 5.6527 -0.0058 13 1 10.4958 6.6663 -0.0154 14 6 12.2364 5.4162 0.0031 15 7 12.6907 4.1810 0.0153 16 14 13.4323 6.8512 -0.0021 17 1 13.2052 7.6893 1.2026 18 1 14.8247 6.3352 0.0086 19 1 13.2176 7.6701 -1.2223 20 6 4.2250 -0.0251 0.0001 21 6 3.5344 -1.1964 0.0058 22 6 2.1270 -1.1712 0.0057 23 8 1.5030 -2.2191 0.0103 24 1 -0.3634 -1.0275 0.0050 25 1 -0.3633 0.5182 0.8874 26 1 -0.3633 0.5095 -0.8925 27 1 1.5752 2.0998 -0.0004 28 1 6.0715 1.6646 0.0017 29 1 6.0256 4.3385 -0.9074 30 1 6.0182 4.3505 0.8725 31 1 8.0665 2.9538 0.8914 32 1 8.0746 2.9412 -0.8884 33 1 8.2818 5.4118 -0.9057 34 1 8.2738 5.4251 0.8742 35 1 10.3267 3.6904 0.0067 36 1 13.6465 4.0158 0.0211 37 1 5.3050 -0.0258 0.0005 38 1 4.0617 -2.1389 0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161730006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:09 Heat of formation + Delta-G solvation = -28.397370 kcal Electronic energy + Delta-G solvation = -20291.368369 eV Core-core repulsion = 16941.666803 eV Total energy + Delta-G solvation = -3349.701566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91671 -39.74005 -37.26237 -36.07593 -35.23394 -34.33804 -32.02222 -30.59957 -29.57075 -28.23118 -25.70262 -24.32640 -23.56239 -22.58783 -21.28458 -20.71844 -18.54461 -17.89543 -17.18118 -16.90921 -16.61890 -16.14129 -15.83989 -15.67892 -14.71484 -14.65529 -14.39744 -14.07418 -13.80924 -13.54172 -13.29857 -13.06099 -13.02390 -12.58657 -12.48484 -11.99011 -11.67738 -10.99846 -10.93533 -10.82310 -10.66356 -10.63593 -10.48580 -10.21882 -10.05097 -9.72280 -9.18106 -8.89297 -8.44988 -6.95628 -5.78858 -3.07950 0.31778 0.93285 2.02507 2.69747 3.05137 3.35237 3.43589 3.47791 3.48941 4.08943 4.19554 4.33821 4.48987 4.57468 4.61352 4.67006 4.82528 5.08415 5.10734 5.26829 5.45744 5.48995 5.55628 5.58140 5.65067 5.90189 5.93510 6.02166 6.15502 6.29047 6.36117 6.45836 6.75737 6.80084 7.35042 7.46912 7.68013 8.03909 8.40159 9.51195 10.08069 10.42549 11.44057 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.046974 B = 0.002366 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.932948 B =11831.902532 C =12396.771922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.492 5.492 3 C 0.208 3.792 4 C -0.250 4.250 5 C 0.574 3.426 6 O -0.548 6.548 7 N -0.721 5.721 8 C 0.123 3.877 9 C -0.139 4.139 10 C 0.156 3.844 11 N -0.734 5.734 12 C -0.241 4.241 13 H 0.071 0.929 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.003 3.997 21 C -0.242 4.242 22 C 0.514 3.486 23 O -0.544 6.544 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.180 0.820 28 H 0.400 0.600 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.141 0.859 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.736 -9.323 -0.020 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.200 5.200 3 C 0.075 3.925 4 C -0.259 4.259 5 C 0.362 3.638 6 O -0.427 6.427 7 N -0.372 5.372 8 C 0.000 4.000 9 C -0.177 4.177 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.372 4.372 13 H 0.089 0.911 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.018 4.018 21 C -0.264 4.264 22 C 0.317 3.683 23 O -0.426 6.426 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.197 0.803 28 H 0.235 0.765 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.159 0.841 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.540 -9.115 -0.024 26.178 hybrid contribution 1.223 0.119 0.005 1.229 sum -23.317 -8.996 -0.019 24.992 Atomic orbital electron populations 1.22358 0.76403 1.06752 1.03912 1.45198 1.09995 1.06831 1.57987 1.22269 0.92995 0.90015 0.87194 1.19458 0.92513 0.94504 1.19412 1.17575 0.82235 0.87708 0.76324 1.90796 1.67437 1.33421 1.51082 1.45912 1.05873 1.10522 1.74908 1.21400 0.91496 0.84396 1.02707 1.21961 0.92393 1.00553 1.02802 1.20515 0.85477 0.92937 0.98243 1.42332 0.99106 1.06747 1.89642 1.19198 0.87361 0.87834 1.42833 0.91135 1.24757 0.96897 0.96448 1.02948 1.69647 1.13097 1.17877 1.57706 0.86237 0.80363 0.81511 0.77896 1.21217 1.21671 1.21221 1.21533 1.00783 0.90967 0.88523 1.22012 0.92215 1.00273 1.11889 1.17324 0.89608 0.82644 0.78770 1.90942 1.69493 1.29948 1.52189 0.87473 0.89656 0.89646 0.80285 0.76491 0.91091 0.91093 0.91218 0.91224 0.96024 0.96026 0.78292 0.93433 0.84137 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 10.55 59.85 0.63 0.85 16 2 N -0.49 -3.75 2.95 -126.74 -0.37 -4.13 16 3 C 0.21 1.52 9.92 -16.43 -0.16 1.36 16 4 C -0.25 -2.15 5.88 -104.96 -0.62 -2.77 16 5 C 0.57 6.40 7.76 -12.51 -0.10 6.30 16 6 O -0.55 -7.85 16.32 5.28 0.09 -7.76 16 7 N -0.72 -7.44 5.51 -61.37 -0.34 -7.78 16 8 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 9 C -0.14 -1.99 5.44 -26.73 -0.15 -2.13 16 10 C 0.16 3.01 6.26 -4.04 -0.03 2.99 16 11 N -0.73 -18.33 5.60 -59.91 -0.34 -18.67 16 12 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 13 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 14 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 15 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 16 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 C 0.00 0.03 9.57 -39.12 -0.37 -0.35 16 21 C -0.24 -2.06 9.97 -39.44 -0.39 -2.46 16 22 C 0.51 5.30 7.40 -15.41 -0.11 5.18 16 23 O -0.54 -7.34 16.33 4.95 0.08 -7.26 16 24 H 0.11 0.64 6.83 -51.93 -0.35 0.29 16 25 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.18 0.99 7.59 -52.49 -0.40 0.60 16 28 H 0.40 3.14 6.54 -40.82 -0.27 2.87 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.38 9.95 7.67 -40.82 -0.31 9.64 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 0.70 6.48 -52.49 -0.34 0.36 16 38 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -35.74 328.99 -6.81 -42.56 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.02 Total: 5.07 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.57 Total: 3.08 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.32 Total: -57.91 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.17 Total: -15.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.74 -6.81 -42.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161730006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.160 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds