Wall clock time and date at job start Tue Mar 31 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34600 * 119.48227 * 2 1 4 4 C 1.37990 * 120.46090 * 180.28149 * 3 2 1 5 5 C 1.47456 * 120.25848 * 179.71544 * 4 3 2 6 6 O 1.21602 * 120.00101 * 359.72452 * 5 4 3 7 7 N 1.34777 * 120.00227 * 179.45359 * 5 4 3 8 8 C 1.46496 * 120.00344 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47401 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47091 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46881 * 179.97438 * 10 9 8 12 12 C 1.36941 * 120.00096 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99808 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99824 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00315 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99648 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47377 * 59.99906 * 16 14 12 18 18 H 1.48497 * 109.47214 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47213 * 300.00375 * 16 14 12 20 20 C 1.41591 * 119.48517 * 359.44556 * 4 3 2 21 21 C 1.35977 * 119.00993 * 0.27221 * 20 4 3 22 22 C 1.34535 * 119.47711 * 179.72297 * 2 1 3 23 23 O 1.21968 * 119.75194 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47436 * 180.27800 * 1 2 3 25 25 H 1.09000 * 109.47085 * 300.28177 * 1 2 3 26 26 H 1.09004 * 109.46704 * 60.27988 * 1 2 3 27 27 H 1.08000 * 119.76605 * 359.97438 * 3 2 1 28 28 H 0.97004 * 119.99647 * 359.97438 * 7 5 4 29 29 H 1.09007 * 109.47081 * 299.99675 * 8 7 5 30 30 H 1.08993 * 109.47302 * 59.99555 * 8 7 5 31 31 H 1.09007 * 109.46761 * 299.99900 * 9 8 7 32 32 H 1.08997 * 109.46989 * 59.99086 * 9 8 7 33 33 H 1.08991 * 109.47132 * 299.99491 * 10 9 8 34 34 H 1.09001 * 109.47155 * 60.00046 * 10 9 8 35 35 H 0.97005 * 120.00177 * 0.02562 * 11 10 9 36 36 H 0.97000 * 119.99802 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.50197 * 180.29763 * 20 4 3 38 38 H 1.07998 * 120.25015 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5071 1.1953 -0.0058 5 6 4.2283 2.4814 -0.0121 6 8 3.6071 3.5268 -0.0173 7 7 5.5759 2.4985 -0.0067 8 6 6.2924 3.7763 -0.0124 9 6 7.8001 3.5158 -0.0038 10 6 8.5483 4.8503 -0.0104 11 7 9.9919 4.6008 -0.0015 12 6 10.8686 5.6527 -0.0058 13 1 10.4958 6.6663 -0.0154 14 6 12.2364 5.4162 0.0031 15 7 12.6907 4.1810 0.0153 16 14 13.4323 6.8512 -0.0021 17 1 13.2052 7.6893 1.2026 18 1 14.8247 6.3352 0.0086 19 1 13.2176 7.6701 -1.2223 20 6 4.2250 -0.0251 0.0001 21 6 3.5344 -1.1964 0.0058 22 6 2.1270 -1.1712 0.0057 23 8 1.5030 -2.2191 0.0103 24 1 -0.3634 -1.0275 0.0050 25 1 -0.3633 0.5182 0.8874 26 1 -0.3633 0.5095 -0.8925 27 1 1.5752 2.0998 -0.0004 28 1 6.0715 1.6646 0.0017 29 1 6.0256 4.3385 -0.9074 30 1 6.0182 4.3505 0.8725 31 1 8.0665 2.9538 0.8914 32 1 8.0746 2.9412 -0.8884 33 1 8.2818 5.4118 -0.9057 34 1 8.2738 5.4251 0.8742 35 1 10.3267 3.6904 0.0067 36 1 13.6465 4.0158 0.0211 37 1 5.3050 -0.0258 0.0005 38 1 4.0617 -2.1389 0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161730006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:08 Heat of formation + Delta-G solvation = -54.470829 kcal Electronic energy + Delta-G solvation = -20292.498999 eV Core-core repulsion = 16941.666803 eV Total energy + Delta-G solvation = -3350.832196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.59625 -40.63562 -38.07537 -37.43209 -36.04722 -35.63865 -33.68741 -31.61673 -30.86477 -28.81524 -27.07614 -25.44049 -24.27161 -24.04090 -22.53924 -21.68598 -19.45574 -18.93862 -18.57654 -17.80630 -17.26790 -17.00399 -16.73401 -16.72501 -16.41990 -15.52103 -15.31794 -15.27241 -15.25470 -14.57241 -14.36462 -14.22323 -13.85731 -13.52940 -13.27629 -13.09759 -12.79061 -12.67930 -12.56838 -12.39244 -12.07803 -11.99880 -11.77869 -11.27284 -11.22113 -11.07765 -10.91339 -10.11854 -9.15480 -8.99375 -7.94814 -5.23596 -0.28473 0.20694 1.42389 1.49303 1.52053 1.58202 1.88876 2.19704 2.58138 2.64069 3.39108 3.51389 3.60856 3.75044 3.76198 3.85032 4.06486 4.14797 4.33139 4.36750 4.38790 4.50319 4.73924 4.77603 4.79307 4.86494 4.90690 4.96387 5.02890 5.28584 5.33130 5.36678 5.44912 5.50903 5.80099 6.28127 6.53618 6.75218 7.19758 7.34615 8.10403 8.33369 9.28467 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.046974 B = 0.002366 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.932948 B =11831.902532 C =12396.771922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.487 5.487 3 C 0.223 3.777 4 C -0.262 4.262 5 C 0.577 3.423 6 O -0.582 6.582 7 N -0.713 5.713 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.151 3.849 11 N -0.748 5.748 12 C -0.249 4.249 13 H 0.075 0.925 14 C -0.076 4.076 15 N -0.969 5.969 16 Si 0.974 3.026 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.278 1.278 20 C 0.020 3.980 21 C -0.259 4.259 22 C 0.502 3.498 23 O -0.587 6.587 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.201 0.799 28 H 0.413 0.587 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.376 0.624 36 H 0.252 0.748 37 H 0.166 0.834 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.439 -8.562 -0.026 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.193 5.193 3 C 0.089 3.911 4 C -0.270 4.270 5 C 0.366 3.634 6 O -0.464 6.464 7 N -0.365 5.365 8 C 0.011 3.989 9 C -0.159 4.159 10 C 0.024 3.976 11 N -0.391 5.391 12 C -0.381 4.381 13 H 0.093 0.907 14 C -0.268 4.268 15 N -0.619 5.619 16 Si 0.803 3.197 17 H -0.204 1.204 18 H -0.221 1.221 19 H -0.204 1.204 20 C -0.002 4.002 21 C -0.280 4.280 22 C 0.306 3.694 23 O -0.473 6.473 24 H 0.109 0.891 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.218 0.782 28 H 0.251 0.749 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.208 0.792 36 H 0.061 0.939 37 H 0.183 0.817 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.279 -8.341 -0.031 26.619 hybrid contribution 1.337 -0.060 0.006 1.338 sum -23.942 -8.401 -0.024 25.373 Atomic orbital electron populations 1.22620 0.74569 1.06463 1.06323 1.45283 1.11252 1.06269 1.56507 1.22558 0.92889 0.90366 0.85271 1.19329 0.93052 0.93698 1.20943 1.17808 0.82157 0.88005 0.75416 1.90783 1.68068 1.34758 1.52786 1.45751 1.05835 1.10401 1.74536 1.21117 0.90198 0.85274 1.02343 1.21722 0.92982 0.97832 1.03344 1.20693 0.83067 0.95777 0.98038 1.42554 1.01203 1.05769 1.89543 1.19614 0.88187 0.88827 1.41441 0.90685 1.25581 0.98691 0.98930 1.03627 1.69795 1.12998 1.19769 1.59361 0.85206 0.77723 0.78584 0.78215 1.20381 1.22090 1.20390 1.21703 1.01939 0.89889 0.86621 1.22061 0.91630 1.01121 1.13232 1.17660 0.90342 0.82778 0.78579 1.90916 1.70370 1.31423 1.54589 0.89080 0.87260 0.87266 0.78235 0.74904 0.91532 0.91542 0.90684 0.90687 0.95934 0.95943 0.79230 0.93929 0.81664 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.55 127.77 1.35 1.65 16 2 N -0.49 -6.70 2.95 -673.12 -1.99 -8.69 16 3 C 0.22 2.76 9.92 84.21 0.84 3.59 16 4 C -0.26 -3.93 5.88 -20.08 -0.12 -4.05 16 5 C 0.58 11.65 7.76 86.67 0.67 12.32 16 6 O -0.58 -15.68 16.32 -4.04 -0.07 -15.75 16 7 N -0.71 -13.06 5.51 -466.34 -2.57 -15.63 16 8 C 0.13 3.10 5.67 86.38 0.49 3.59 16 9 C -0.12 -3.24 5.44 30.59 0.17 -3.07 16 10 C 0.15 5.65 6.26 86.38 0.54 6.19 16 11 N -0.75 -37.03 5.60 -343.46 -1.92 -38.95 16 12 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 13 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 14 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 15 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 16 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.02 0.25 9.57 22.57 0.22 0.47 16 21 C -0.26 -4.15 9.97 22.36 0.22 -3.92 16 22 C 0.50 10.10 7.40 84.90 0.63 10.73 16 23 O -0.59 -16.17 16.33 -5.21 -0.09 -16.26 16 24 H 0.09 1.06 6.83 -2.39 -0.02 1.05 16 25 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 27 H 0.20 1.65 7.59 -2.91 -0.02 1.63 16 28 H 0.41 5.31 6.54 -92.71 -0.61 4.71 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.38 19.48 7.67 -92.70 -0.71 18.77 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.17 1.16 6.48 -2.91 -0.02 1.14 16 38 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -76.81 328.99 1.76 -75.05 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.23 Total: 20.04 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.31 Total: 10.71 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -6.20 Total: -121.41 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.15 Total: -32.01 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.81 1.76 -75.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161730006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.575 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds