Wall clock time and date at job start Tue Mar 31 2020 01:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35579 * 118.80591 * 2 1 4 4 C 1.34870 * 121.79972 * 179.97438 * 3 2 1 5 5 C 1.41668 * 119.33787 * 0.02902 * 4 3 2 6 6 O 1.22090 * 121.06700 * 179.97438 * 5 4 3 7 7 C 1.47100 * 117.86732 * 359.97438 * 5 4 3 8 8 C 1.47286 * 120.88392 * 180.02562 * 7 5 4 9 9 O 1.21613 * 120.00055 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99694 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72406 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99838 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99927 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31612 * 120.00037 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46755 * 90.00342 * 19 17 15 21 21 H 1.48496 * 109.47178 * 210.00292 * 19 17 15 22 22 H 1.48498 * 109.47247 * 330.00288 * 19 17 15 23 23 C 1.34349 * 118.80352 * 180.32785 * 2 1 3 24 24 H 1.09004 * 109.46831 * 89.99912 * 1 2 3 25 25 H 1.08996 * 109.46905 * 209.99607 * 1 2 3 26 26 H 1.08990 * 109.47118 * 330.00002 * 1 2 3 27 27 H 1.08001 * 119.10027 * 0.02617 * 3 2 1 28 28 H 1.07994 * 120.32772 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 30 30 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 31 31 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 32 32 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 33 33 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 34 34 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 35 35 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 36 36 H 0.96992 * 119.99973 * 359.97438 * 14 13 12 37 37 H 0.97003 * 120.00466 * 180.02562 * 18 17 15 38 38 H 1.08001 * 119.82212 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4651 1.2585 0.0005 5 6 4.2228 0.0614 0.0004 6 8 5.4434 0.0884 0.0004 7 6 3.4917 -1.2151 0.0004 8 6 4.2129 -2.4993 0.0009 9 8 5.4289 -2.5138 0.0018 10 7 3.5250 -3.6583 0.0013 11 6 4.2423 -4.9357 -0.0043 12 6 3.2342 -6.0867 -0.0095 13 6 3.9833 -7.4207 -0.0160 14 7 3.0180 -8.5227 -0.0216 15 6 3.4590 -9.8192 -0.0275 16 1 4.5184 -10.0292 -0.0275 17 6 2.5444 -10.8634 -0.0322 18 7 1.2534 -10.6074 -0.0316 19 14 3.1459 -12.6319 -0.0409 20 1 3.3056 -13.1072 1.3569 21 1 2.1573 -13.4876 -0.7448 22 1 4.4531 -12.7067 -0.7416 23 6 2.1123 -1.1772 -0.0067 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.5445 2.1030 0.0004 28 1 3.9610 2.2178 0.0009 29 1 2.5551 -3.6468 0.0010 30 1 4.8683 -4.9970 -0.8946 31 1 4.8681 -5.0050 0.8854 32 1 2.6083 -6.0253 0.8807 33 1 2.6083 -6.0175 -0.8993 34 1 4.6090 -7.4818 -0.9064 35 1 4.6095 -7.4902 0.8736 36 1 2.0666 -8.3341 -0.0204 37 1 0.6142 -11.3371 -0.0346 38 1 1.5500 -2.0993 -0.0124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162270653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:01 Heat of formation + Delta-G solvation = -21.916942 kcal Electronic energy + Delta-G solvation = -20480.138953 eV Core-core repulsion = 17130.718400 eV Total energy + Delta-G solvation = -3349.420553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36730 -39.27125 -37.94892 -35.88464 -34.30273 -32.97711 -32.62826 -31.57862 -29.42322 -27.44080 -25.71619 -24.57642 -23.17289 -22.39769 -21.20426 -20.61430 -18.39698 -17.78216 -17.17007 -16.85334 -16.24751 -16.02367 -15.55079 -15.48850 -14.84649 -14.54455 -14.38167 -13.87679 -13.72548 -13.61960 -13.26914 -13.18898 -12.91644 -12.74811 -12.43346 -12.32196 -11.60416 -10.93772 -10.91217 -10.77026 -10.60166 -10.10854 -10.10688 -9.99534 -9.71600 -9.31162 -8.96352 -8.87550 -8.27561 -6.93307 -5.77656 -3.06114 0.54074 0.98902 1.96008 2.93461 3.16563 3.44334 3.49504 3.51351 3.70730 3.74327 4.01678 4.23629 4.43785 4.47890 4.59835 4.71680 4.75440 4.97482 5.15626 5.27900 5.35557 5.40218 5.58114 5.66300 5.95480 6.08281 6.11259 6.15419 6.21912 6.33963 6.35267 6.54817 6.81305 6.85450 7.57542 7.70896 7.95389 8.38936 8.41725 9.52860 10.09935 10.44794 11.45536 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.002660 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.993949 B =10523.095948 C =11384.019539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.476 5.476 3 C 0.125 3.875 4 C -0.265 4.265 5 C 0.405 3.595 6 O -0.477 6.477 7 C -0.296 4.296 8 C 0.568 3.432 9 O -0.512 6.512 10 N -0.733 5.733 11 C 0.124 3.876 12 C -0.136 4.136 13 C 0.155 3.845 14 N -0.734 5.734 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.936 5.936 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.172 3.828 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.391 0.609 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 27.066 0.097 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.163 5.163 3 C 0.001 3.999 4 C -0.290 4.290 5 C 0.290 3.710 6 O -0.358 6.358 7 C -0.307 4.307 8 C 0.355 3.645 9 O -0.386 6.386 10 N -0.386 5.386 11 C 0.001 3.999 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.378 5.378 15 C -0.369 4.369 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.585 5.585 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.041 3.959 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.182 0.818 28 H 0.171 0.829 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.712 26.936 0.093 27.760 hybrid contribution -0.873 -0.963 -0.008 1.299 sum -7.585 25.974 0.084 27.059 Atomic orbital electron populations 1.22521 0.75963 1.05781 1.04548 1.42674 1.08699 1.04485 1.60412 1.21702 0.94330 0.88353 0.95495 1.22508 0.93146 1.01451 1.11860 1.18202 0.89338 0.86986 0.76498 1.90839 1.14306 1.88926 1.41707 1.22569 0.92232 0.97350 1.18595 1.17492 0.87260 0.82530 0.77221 1.90862 1.12930 1.86873 1.47964 1.45987 1.09703 1.06048 1.76893 1.21342 0.94999 0.80919 1.02657 1.21940 0.98412 0.94619 1.02497 1.20533 0.92566 0.85845 0.98334 1.42339 1.04692 1.01169 1.89629 1.19265 0.92302 0.82969 1.42403 0.91061 1.24744 0.95278 0.98034 1.03067 1.69654 0.99873 1.30916 1.58059 0.86162 0.77531 0.84823 0.77545 1.21691 1.21770 1.20691 1.22262 0.93217 0.89175 0.91246 0.89919 0.88782 0.88894 0.81822 0.82892 0.77487 0.91279 0.91268 0.91393 0.91398 0.95942 0.95950 0.78364 0.93550 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.02 10.52 59.85 0.63 0.61 16 2 N -0.48 -1.82 2.97 -124.39 -0.37 -2.19 16 3 C 0.13 0.54 10.17 -17.09 -0.17 0.36 16 4 C -0.27 -2.27 10.01 -39.47 -0.40 -2.66 16 5 C 0.40 5.70 6.96 -34.68 -0.24 5.46 16 6 O -0.48 -9.30 16.41 -15.18 -0.25 -9.55 16 7 C -0.30 -3.58 6.05 -102.71 -0.62 -4.20 16 8 C 0.57 8.75 7.77 -12.58 -0.10 8.65 16 9 O -0.51 -10.62 15.57 -14.75 -0.23 -10.85 16 10 N -0.73 -9.04 5.51 -61.43 -0.34 -9.38 16 11 C 0.12 1.80 5.67 -4.04 -0.02 1.77 16 12 C -0.14 -2.08 5.44 -26.73 -0.15 -2.23 16 13 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 14 N -0.73 -18.71 5.60 -59.90 -0.34 -19.05 16 15 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 18 N -0.94 -28.25 13.06 55.49 0.72 -27.52 16 19 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.17 1.09 9.80 -16.54 -0.16 0.93 16 24 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 25 H 0.09 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 27 H 0.16 0.00 7.97 -52.49 -0.42 -0.41 16 28 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.39 3.32 6.55 -40.82 -0.27 3.05 16 30 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.17 0.50 6.35 -52.49 -0.33 0.17 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -41.57 329.82 -7.44 -49.01 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.09 Total: 2.69 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.50 Total: 4.34 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.32 Total: -58.14 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.48 Total: -20.40 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -41.57 -7.44 -49.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162270653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.089 kcal (2) G-P(sol) polarization free energy of solvation -41.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds