Wall clock time and date at job start Tue Mar 31 2020 01:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35579 * 118.80591 * 2 1 4 4 C 1.34870 * 121.79972 * 179.97438 * 3 2 1 5 5 C 1.41668 * 119.33787 * 0.02902 * 4 3 2 6 6 O 1.22090 * 121.06700 * 179.97438 * 5 4 3 7 7 C 1.47100 * 117.86732 * 359.97438 * 5 4 3 8 8 C 1.47286 * 120.88392 * 180.02562 * 7 5 4 9 9 O 1.21613 * 120.00055 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99694 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72406 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99838 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99927 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31612 * 120.00037 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46755 * 90.00342 * 19 17 15 21 21 H 1.48496 * 109.47178 * 210.00292 * 19 17 15 22 22 H 1.48498 * 109.47247 * 330.00288 * 19 17 15 23 23 C 1.34349 * 118.80352 * 180.32785 * 2 1 3 24 24 H 1.09004 * 109.46831 * 89.99912 * 1 2 3 25 25 H 1.08996 * 109.46905 * 209.99607 * 1 2 3 26 26 H 1.08990 * 109.47118 * 330.00002 * 1 2 3 27 27 H 1.08001 * 119.10027 * 0.02617 * 3 2 1 28 28 H 1.07994 * 120.32772 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 30 30 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 31 31 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 32 32 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 33 33 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 34 34 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 35 35 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 36 36 H 0.96992 * 119.99973 * 359.97438 * 14 13 12 37 37 H 0.97003 * 120.00466 * 180.02562 * 18 17 15 38 38 H 1.08001 * 119.82212 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4651 1.2585 0.0005 5 6 4.2228 0.0614 0.0004 6 8 5.4434 0.0884 0.0004 7 6 3.4917 -1.2151 0.0004 8 6 4.2129 -2.4993 0.0009 9 8 5.4289 -2.5138 0.0018 10 7 3.5250 -3.6583 0.0013 11 6 4.2423 -4.9357 -0.0043 12 6 3.2342 -6.0867 -0.0095 13 6 3.9833 -7.4207 -0.0160 14 7 3.0180 -8.5227 -0.0216 15 6 3.4590 -9.8192 -0.0275 16 1 4.5184 -10.0292 -0.0275 17 6 2.5444 -10.8634 -0.0322 18 7 1.2534 -10.6074 -0.0316 19 14 3.1459 -12.6319 -0.0409 20 1 3.3056 -13.1072 1.3569 21 1 2.1573 -13.4876 -0.7448 22 1 4.4531 -12.7067 -0.7416 23 6 2.1123 -1.1772 -0.0067 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.5445 2.1030 0.0004 28 1 3.9610 2.2178 0.0009 29 1 2.5551 -3.6468 0.0010 30 1 4.8683 -4.9970 -0.8946 31 1 4.8681 -5.0050 0.8854 32 1 2.6083 -6.0253 0.8807 33 1 2.6083 -6.0175 -0.8993 34 1 4.6090 -7.4818 -0.9064 35 1 4.6095 -7.4902 0.8736 36 1 2.0666 -8.3341 -0.0204 37 1 0.6142 -11.3371 -0.0346 38 1 1.5500 -2.0993 -0.0124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162270653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:01 Heat of formation + Delta-G solvation = -54.369887 kcal Electronic energy + Delta-G solvation = -20481.546219 eV Core-core repulsion = 17130.718400 eV Total energy + Delta-G solvation = -3350.827819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02177 -40.32717 -38.88332 -37.44442 -35.88798 -34.05477 -33.44984 -32.90441 -31.01563 -27.81329 -27.06593 -25.68849 -24.41110 -23.53757 -22.57812 -21.74939 -19.38644 -18.87661 -18.45118 -17.72937 -16.93328 -16.92410 -16.75250 -16.50192 -16.33916 -15.56914 -15.47181 -15.28675 -15.08805 -14.76684 -14.48140 -14.15968 -13.83509 -13.53262 -13.28921 -13.18054 -12.82033 -12.65593 -12.59019 -12.41988 -12.07532 -12.03752 -11.79545 -11.19703 -10.94527 -10.72732 -10.32560 -10.13431 -9.04406 -9.01410 -7.96811 -5.25437 -0.17175 0.39403 1.48240 1.49510 1.56075 1.58188 1.90875 2.11779 2.56529 2.81900 3.32118 3.37090 3.66816 3.76294 3.80621 3.94336 4.09546 4.22484 4.30165 4.42571 4.49817 4.59768 4.66049 4.73001 4.74439 4.81570 4.90059 4.94044 5.27420 5.32298 5.35446 5.42089 5.49246 5.72324 5.81081 6.26585 6.60900 7.10699 7.33057 7.33425 8.07032 8.32624 9.26639 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.002660 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.993949 B =10523.095948 C =11384.019539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.458 5.458 3 C 0.167 3.833 4 C -0.300 4.300 5 C 0.377 3.623 6 O -0.571 6.571 7 C -0.356 4.356 8 C 0.564 3.436 9 O -0.583 6.583 10 N -0.714 5.714 11 C 0.134 3.866 12 C -0.114 4.114 13 C 0.150 3.850 14 N -0.745 5.745 15 C -0.251 4.251 16 H 0.072 0.928 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.973 3.027 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.273 1.273 23 C 0.222 3.778 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.226 0.774 28 H 0.157 0.843 29 H 0.413 0.587 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.378 0.622 37 H 0.253 0.747 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 28.189 0.116 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.141 5.141 3 C 0.042 3.958 4 C -0.323 4.323 5 C 0.270 3.730 6 O -0.460 6.460 7 C -0.366 4.366 8 C 0.354 3.646 9 O -0.463 6.463 10 N -0.368 5.368 11 C 0.009 3.991 12 C -0.152 4.152 13 C 0.023 3.977 14 N -0.388 5.388 15 C -0.382 4.382 16 H 0.090 0.910 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.802 3.198 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.198 1.198 23 C 0.086 3.914 24 H 0.120 0.880 25 H 0.130 0.870 26 H 0.141 0.859 27 H 0.242 0.758 28 H 0.175 0.825 29 H 0.251 0.749 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.210 0.790 37 H 0.062 0.938 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.041 28.099 0.111 30.190 hybrid contribution 0.167 -1.210 -0.015 1.221 sum -10.874 26.889 0.096 29.005 Atomic orbital electron populations 1.23051 0.71907 1.08328 1.06588 1.43360 1.11067 1.03662 1.55973 1.22456 0.93034 0.90304 0.90044 1.22389 0.94950 0.99600 1.15377 1.19092 0.88958 0.89627 0.75326 1.90780 1.17537 1.90139 1.47498 1.22148 0.94534 0.94930 1.25003 1.18076 0.86720 0.84079 0.75743 1.90814 1.16102 1.87874 1.51535 1.45679 1.10632 1.04507 1.75962 1.21066 0.94772 0.81757 1.01503 1.21676 0.97918 0.91844 1.03726 1.20675 0.92246 0.86924 0.97824 1.42499 1.05206 1.01549 1.89543 1.19630 0.92480 0.84528 1.41602 0.91020 1.25543 0.95527 1.01953 1.03467 1.69785 1.00788 1.31845 1.59291 0.85149 0.77228 0.79937 0.77505 1.21298 1.21794 1.19770 1.22662 0.91174 0.91675 0.85847 0.88043 0.87010 0.85924 0.75805 0.82492 0.74884 0.92638 0.92613 0.90088 0.90102 0.96289 0.96275 0.79009 0.93816 0.77397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.33 10.52 127.77 1.34 1.01 16 2 N -0.46 -0.91 2.97 -547.47 -1.63 -2.53 16 3 C 0.17 0.64 10.17 83.34 0.85 1.49 16 4 C -0.30 -4.98 10.01 22.34 0.22 -4.76 16 5 C 0.38 11.56 6.96 25.44 0.18 11.74 16 6 O -0.57 -25.41 16.41 13.53 0.22 -25.19 16 7 C -0.36 -8.70 6.05 -18.63 -0.11 -8.81 16 8 C 0.56 18.33 7.77 86.62 0.67 19.01 16 9 O -0.58 -26.76 15.57 15.07 0.23 -26.53 16 10 N -0.71 -17.21 5.51 -466.50 -2.57 -19.78 16 11 C 0.13 3.90 5.67 86.38 0.49 4.39 16 12 C -0.11 -3.32 5.44 30.59 0.17 -3.15 16 13 C 0.15 6.04 6.26 86.38 0.54 6.58 16 14 N -0.74 -37.75 5.60 -343.44 -1.92 -39.68 16 15 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 19 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 C 0.22 1.98 9.80 84.25 0.83 2.80 16 24 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H 0.11 -1.16 7.96 -2.39 -0.02 -1.17 16 26 H 0.12 -1.56 7.96 -2.39 -0.02 -1.58 16 27 H 0.23 -1.71 7.97 -2.91 -0.02 -1.73 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.41 5.81 6.55 -92.71 -0.61 5.20 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.38 19.65 7.67 -92.71 -0.71 18.94 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.21 0.04 6.35 -2.91 -0.02 0.02 16 Total: -1.00 -102.18 329.82 2.90 -99.28 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -0.23 Total: 10.83 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.48 Total: 13.25 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -5.84 Total: -119.84 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: 0.46 Total: -51.71 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -102.18 2.90 -99.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162270653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.910 kcal (2) G-P(sol) polarization free energy of solvation -102.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds