Wall clock time and date at job start Tue Mar 31 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35617 * 116.99706 * 2 1 4 4 C 1.39159 * 120.50557 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.63201 * 179.97438 * 4 3 2 6 6 C 1.39945 * 119.59243 * 0.02562 * 5 4 3 7 7 N 1.38907 * 119.49452 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99867 * 359.97438 * 7 6 5 9 9 H 1.09004 * 110.43697 * 36.09651 * 8 7 6 10 10 C 1.54094 * 110.49265 * 273.54439 * 8 7 6 11 11 O 1.43742 * 107.29813 * 239.29620 * 10 8 7 12 12 C 1.44383 * 106.97489 * 26.51181 * 11 10 8 13 13 C 1.54818 * 110.48609 * 158.77836 * 8 7 6 14 14 H 1.09005 * 110.90658 * 215.99490 * 13 8 7 15 15 N 1.46893 * 110.90546 * 339.59973 * 13 8 7 16 16 N 1.31857 * 121.00827 * 359.97438 * 6 5 4 17 17 C 1.33825 * 121.47453 * 0.02614 * 16 6 5 18 18 C 1.40922 * 119.84858 * 179.97438 * 17 16 6 19 19 H 1.07996 * 119.99658 * 179.97438 * 18 17 16 20 20 C 1.40015 * 120.00231 * 359.97438 * 18 17 16 21 21 N 1.30791 * 119.99919 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47151 * 90.00069 * 22 20 18 24 24 H 1.48497 * 109.47255 * 210.00209 * 22 20 18 25 25 H 1.48500 * 109.47154 * 329.99939 * 22 20 18 26 26 H 1.09003 * 109.46744 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47874 * 300.00286 * 1 2 3 28 28 H 1.08999 * 109.47221 * 60.00540 * 1 2 3 29 29 H 1.08003 * 120.68441 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.20279 * 180.29364 * 5 4 3 31 31 H 0.96993 * 120.00075 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.87580 * 358.72168 * 10 8 7 33 33 H 1.09009 * 109.87735 * 119.86781 * 10 8 7 34 34 H 1.09003 * 110.61323 * 78.43928 * 12 11 10 35 35 H 1.08997 * 110.61735 * 201.44060 * 12 11 10 36 36 H 1.00900 * 111.00028 * 179.97438 * 15 13 8 37 37 H 1.00894 * 111.00371 * 303.95039 * 15 13 8 38 38 H 0.97002 * 120.00009 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3821 0.0005 5 6 1.9648 3.5932 0.0011 6 6 3.3641 3.6109 0.0005 7 7 4.0327 4.8284 0.0005 8 6 3.2732 6.0811 0.0005 9 1 2.3701 5.9787 0.6023 10 6 2.9172 6.4962 -1.4402 11 8 3.4982 7.7911 -1.6679 12 6 4.6394 7.9013 -0.7902 13 6 4.1483 7.2454 0.5254 14 1 3.5530 7.9462 1.1108 15 7 5.2800 6.7371 1.3120 16 7 4.0576 2.4894 0.0000 17 6 3.4543 1.2948 -0.0006 18 6 4.2291 0.1177 -0.0016 19 1 3.7448 -0.8475 -0.0017 20 6 5.6269 0.1996 -0.0027 21 7 6.2134 1.3686 -0.0022 22 14 6.6540 -1.3606 -0.0034 23 1 6.9251 -1.7741 -1.4037 24 1 7.9394 -1.1074 0.6956 25 1 5.9139 -2.4407 0.6972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 0.2175 2.3479 0.0005 30 1 1.4097 4.5197 0.0063 31 1 5.0024 4.8492 -0.0003 32 1 3.3298 5.7754 -2.1461 33 1 1.8344 6.5506 -1.5533 34 1 5.4905 7.3551 -1.1970 35 1 4.8967 8.9474 -0.6248 36 1 5.8516 7.4947 1.6545 37 1 4.9602 6.1536 2.0704 38 1 7.1818 1.4254 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162919860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:11 Heat of formation + Delta-G solvation = -24.982073 kcal Electronic energy + Delta-G solvation = -22109.719806 eV Core-core repulsion = 18760.166339 eV Total energy + Delta-G solvation = -3349.553468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.68061 -38.63341 -36.74226 -34.88417 -33.78465 -32.65596 -30.29615 -29.43413 -27.68265 -27.54040 -26.30952 -25.00586 -22.52974 -21.62706 -20.87101 -19.78337 -17.50078 -17.02417 -16.52871 -16.06584 -15.77801 -15.40482 -14.99308 -14.68739 -14.60400 -14.58282 -13.98300 -13.83219 -13.11268 -12.70902 -12.56246 -12.33799 -11.97127 -11.76303 -11.55784 -11.42295 -11.18421 -11.14415 -10.77049 -10.50769 -10.41022 -10.38767 -9.77313 -9.59750 -9.42973 -8.75818 -8.42113 -7.98637 -7.62584 -6.34037 -6.24794 -4.32848 2.84930 3.14615 3.15593 3.19146 3.29699 3.86110 4.02172 4.21676 4.49688 4.63360 4.65585 4.82904 4.97335 5.18598 5.38229 5.51997 5.69527 5.82212 5.82265 5.85439 5.98847 6.00316 6.03650 6.11550 6.13665 6.42089 6.71523 6.85173 6.87786 7.06109 7.24372 7.34590 7.40408 7.54045 7.72443 8.27261 8.31921 8.48703 8.78117 8.85887 9.22098 10.21988 10.38849 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.005875 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.067121 B = 4764.700277 C = 6159.949539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.078 4.078 4 C -0.113 4.113 5 C -0.352 4.352 6 C 0.393 3.607 7 N -0.717 5.717 8 C 0.140 3.860 9 H 0.087 0.913 10 C 0.031 3.969 11 O -0.382 6.382 12 C 0.054 3.946 13 C 0.047 3.953 14 H 0.057 0.943 15 N -0.830 5.830 16 N -0.510 5.510 17 C 0.289 3.711 18 C -0.412 4.412 19 H 0.090 0.910 20 C 0.067 3.933 21 N -0.710 5.710 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.261 1.261 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.341 0.659 37 H 0.354 0.646 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 8.406 1.788 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.379 4.379 6 C 0.155 3.845 7 N -0.356 5.356 8 C 0.031 3.969 9 H 0.105 0.895 10 C -0.048 4.048 11 O -0.300 6.300 12 C -0.023 4.023 13 C -0.066 4.066 14 H 0.075 0.925 15 N -0.363 5.363 16 N -0.233 5.233 17 C 0.160 3.840 18 C -0.444 4.444 19 H 0.108 0.892 20 C -0.158 4.158 21 N -0.331 5.331 22 Si 0.731 3.269 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.185 1.185 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.762 8.237 0.967 8.479 hybrid contribution -0.913 -0.002 0.935 1.307 sum -2.675 8.235 1.902 8.865 Atomic orbital electron populations 1.22676 0.82254 1.01463 0.99604 1.85920 1.17784 1.27953 1.90924 1.20037 0.93451 0.83079 1.15968 1.20653 0.97192 0.92399 1.03512 1.20351 0.92917 0.96175 1.28447 1.18515 0.87627 0.86811 0.91509 1.43968 1.08486 0.99995 1.83153 1.21916 0.94943 0.84810 0.95261 0.89543 1.23928 0.98756 0.84801 0.97332 1.88837 1.43795 1.34978 1.62348 1.23532 0.89987 1.00555 0.88224 1.23120 0.92421 0.95537 0.95489 0.92504 1.58385 1.21735 1.25214 1.30956 1.68392 1.34619 0.94862 1.25391 1.17780 0.84980 0.91089 0.90107 1.19534 0.90536 0.93122 1.41193 0.89160 1.26080 0.98762 0.97116 0.93868 1.70172 1.10236 1.24361 1.28375 0.86332 0.79071 0.82283 0.79167 1.19502 1.20281 1.18515 0.90222 0.94563 0.94524 0.88405 0.89223 0.75308 0.91145 0.89783 0.90998 0.89546 0.84654 0.83188 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.36 9.61 -18.55 -0.18 -7.53 16 3 C -0.08 -1.99 6.74 -38.10 -0.26 -2.24 16 4 C -0.11 -2.61 9.12 -39.22 -0.36 -2.96 16 5 C -0.35 -7.96 9.24 -38.92 -0.36 -8.32 16 6 C 0.39 9.37 7.65 -155.27 -1.19 8.19 16 7 N -0.72 -14.01 4.77 -52.38 -0.25 -14.26 16 8 C 0.14 2.18 2.89 -66.40 -0.19 1.99 16 9 H 0.09 1.35 6.55 -51.93 -0.34 1.01 16 10 C 0.03 0.48 7.50 37.73 0.28 0.76 16 11 O -0.38 -5.79 11.52 -35.23 -0.41 -6.19 16 12 C 0.05 0.69 7.41 38.21 0.28 0.97 16 13 C 0.05 0.59 4.20 -65.70 -0.28 0.31 16 14 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 15 N -0.83 -9.92 7.91 -2.97 -0.02 -9.95 16 16 N -0.51 -13.89 7.88 -10.20 -0.08 -13.97 16 17 C 0.29 8.07 6.56 -84.85 -0.56 7.51 16 18 C -0.41 -11.32 8.94 -37.90 -0.34 -11.66 16 19 H 0.09 2.42 7.31 -52.49 -0.38 2.04 16 20 C 0.07 1.72 5.50 -17.33 -0.10 1.63 16 21 N -0.71 -18.74 11.45 55.55 0.64 -18.10 16 22 Si 0.91 18.96 29.56 -169.99 -5.02 13.94 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.10 1.97 6.44 -52.48 -0.34 1.63 16 30 H 0.09 1.79 6.23 -52.48 -0.33 1.46 16 31 H 0.41 8.37 7.76 -40.82 -0.32 8.05 16 32 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.34 3.15 9.08 -39.29 -0.36 2.79 16 37 H 0.35 4.49 8.92 -39.30 -0.35 4.14 16 38 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -30.15 314.19 -7.52 -37.68 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -4.87 Total: 15.83 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.06 Total: -2.18 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.58 Total: -13.73 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.15 -7.52 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162919860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.695 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds