Wall clock time and date at job start Tue Mar 31 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35617 * 116.99706 * 2 1 4 4 C 1.39159 * 120.50557 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.63201 * 179.97438 * 4 3 2 6 6 C 1.39945 * 119.59243 * 0.02562 * 5 4 3 7 7 N 1.38907 * 119.49452 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99867 * 359.97438 * 7 6 5 9 9 H 1.09004 * 110.43697 * 36.09651 * 8 7 6 10 10 C 1.54094 * 110.49265 * 273.54439 * 8 7 6 11 11 O 1.43742 * 107.29813 * 239.29620 * 10 8 7 12 12 C 1.44383 * 106.97489 * 26.51181 * 11 10 8 13 13 C 1.54818 * 110.48609 * 158.77836 * 8 7 6 14 14 H 1.09005 * 110.90658 * 215.99490 * 13 8 7 15 15 N 1.46893 * 110.90546 * 339.59973 * 13 8 7 16 16 N 1.31857 * 121.00827 * 359.97438 * 6 5 4 17 17 C 1.33825 * 121.47453 * 0.02614 * 16 6 5 18 18 C 1.40922 * 119.84858 * 179.97438 * 17 16 6 19 19 H 1.07996 * 119.99658 * 179.97438 * 18 17 16 20 20 C 1.40015 * 120.00231 * 359.97438 * 18 17 16 21 21 N 1.30791 * 119.99919 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47151 * 90.00069 * 22 20 18 24 24 H 1.48497 * 109.47255 * 210.00209 * 22 20 18 25 25 H 1.48500 * 109.47154 * 329.99939 * 22 20 18 26 26 H 1.09003 * 109.46744 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47874 * 300.00286 * 1 2 3 28 28 H 1.08999 * 109.47221 * 60.00540 * 1 2 3 29 29 H 1.08003 * 120.68441 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.20279 * 180.29364 * 5 4 3 31 31 H 0.96993 * 120.00075 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.87580 * 358.72168 * 10 8 7 33 33 H 1.09009 * 109.87735 * 119.86781 * 10 8 7 34 34 H 1.09003 * 110.61323 * 78.43928 * 12 11 10 35 35 H 1.08997 * 110.61735 * 201.44060 * 12 11 10 36 36 H 1.00900 * 111.00028 * 179.97438 * 15 13 8 37 37 H 1.00894 * 111.00371 * 303.95039 * 15 13 8 38 38 H 0.97002 * 120.00009 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3821 0.0005 5 6 1.9648 3.5932 0.0011 6 6 3.3641 3.6109 0.0005 7 7 4.0327 4.8284 0.0005 8 6 3.2732 6.0811 0.0005 9 1 2.3701 5.9787 0.6023 10 6 2.9172 6.4962 -1.4402 11 8 3.4982 7.7911 -1.6679 12 6 4.6394 7.9013 -0.7902 13 6 4.1483 7.2454 0.5254 14 1 3.5530 7.9462 1.1108 15 7 5.2800 6.7371 1.3120 16 7 4.0576 2.4894 0.0000 17 6 3.4543 1.2948 -0.0006 18 6 4.2291 0.1177 -0.0016 19 1 3.7448 -0.8475 -0.0017 20 6 5.6269 0.1996 -0.0027 21 7 6.2134 1.3686 -0.0022 22 14 6.6540 -1.3606 -0.0034 23 1 6.9251 -1.7741 -1.4037 24 1 7.9394 -1.1074 0.6956 25 1 5.9139 -2.4407 0.6972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 0.2175 2.3479 0.0005 30 1 1.4097 4.5197 0.0063 31 1 5.0024 4.8492 -0.0003 32 1 3.3298 5.7754 -2.1461 33 1 1.8344 6.5506 -1.5533 34 1 5.4905 7.3551 -1.1970 35 1 4.8967 8.9474 -0.6248 36 1 5.8516 7.4947 1.6545 37 1 4.9602 6.1536 2.0704 38 1 7.1818 1.4254 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162919860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:10 Heat of formation + Delta-G solvation = -48.034828 kcal Electronic energy + Delta-G solvation = -22110.719449 eV Core-core repulsion = 18760.166339 eV Total energy + Delta-G solvation = -3350.553110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.00518 -40.29795 -38.43576 -36.33992 -35.34612 -34.15244 -32.15234 -31.02733 -29.06697 -28.70162 -27.94217 -26.77781 -23.79206 -23.38079 -22.43127 -21.19657 -19.28981 -18.56954 -18.18561 -17.49899 -17.11472 -16.60939 -16.31504 -16.23440 -16.22275 -16.11429 -15.21365 -15.11387 -14.75346 -14.33962 -14.23645 -13.99485 -13.28140 -13.21864 -13.01979 -12.87145 -12.82820 -12.61379 -12.42398 -12.08928 -11.94707 -11.82496 -11.53964 -11.25330 -10.78567 -10.10494 -9.88379 -9.68894 -9.51529 -8.22028 -8.02789 -6.29284 1.02078 1.31105 1.43255 1.55894 1.59591 2.28243 2.52462 2.92856 2.96561 3.08645 3.40995 3.57896 3.80521 4.04981 4.07778 4.22610 4.30214 4.39163 4.47097 4.53022 4.63963 4.71034 4.76268 4.79329 4.80711 4.87492 4.97159 5.02334 5.35986 5.54340 5.69752 5.78293 5.89034 6.14086 6.30487 6.45526 6.55126 6.80552 6.88919 7.10534 7.39077 8.34459 8.52183 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.005875 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.067121 B = 4764.700277 C = 6159.949539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.101 4.101 4 C -0.111 4.111 5 C -0.346 4.346 6 C 0.377 3.623 7 N -0.709 5.709 8 C 0.133 3.867 9 H 0.093 0.907 10 C 0.036 3.964 11 O -0.389 6.389 12 C 0.052 3.948 13 C 0.059 3.941 14 H 0.084 0.916 15 N -0.839 5.839 16 N -0.540 5.540 17 C 0.253 3.747 18 C -0.451 4.451 19 H 0.082 0.918 20 C 0.025 3.975 21 N -0.744 5.744 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.266 1.266 25 H -0.260 1.260 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.402 0.598 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.358 0.642 37 H 0.350 0.650 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 9.571 2.246 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.253 6.253 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.372 4.372 6 C 0.138 3.862 7 N -0.346 5.346 8 C 0.025 3.975 9 H 0.111 0.889 10 C -0.043 4.043 11 O -0.308 6.308 12 C -0.025 4.025 13 C -0.053 4.053 14 H 0.101 0.899 15 N -0.374 5.374 16 N -0.263 5.263 17 C 0.124 3.876 18 C -0.483 4.483 19 H 0.100 0.900 20 C -0.196 4.196 21 N -0.367 5.367 22 Si 0.804 3.196 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.184 1.184 26 H 0.128 0.872 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.239 0.761 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.522 9.462 1.428 9.896 hybrid contribution -0.816 -0.217 0.779 1.149 sum -3.338 9.245 2.206 10.074 Atomic orbital electron populations 1.23010 0.79183 1.03928 1.00527 1.85854 1.20993 1.27412 1.91072 1.20088 0.93245 0.84554 1.17014 1.21028 0.98804 0.91691 1.02072 1.20713 0.92669 0.97361 1.26420 1.18917 0.88629 0.87372 0.91292 1.44036 1.08301 1.00059 1.82229 1.22181 0.95540 0.84086 0.95678 0.88945 1.23782 0.99486 0.84608 0.96418 1.88836 1.44505 1.34256 1.63172 1.23690 0.88712 1.02339 0.87712 1.23076 0.92316 0.94271 0.95672 0.89864 1.58321 1.21910 1.26146 1.31010 1.68325 1.36034 0.95671 1.26310 1.18208 0.86724 0.91688 0.90976 1.19710 0.91906 0.92953 1.43766 0.90002 1.26896 0.99239 1.00586 0.92927 1.70253 1.10752 1.26407 1.29255 0.85203 0.77363 0.77778 0.79294 1.18972 1.19005 1.18378 0.87190 0.93434 0.93500 0.85201 0.86225 0.76066 0.94045 0.88244 0.92546 0.86349 0.82727 0.83606 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.83 113.37 1.11 2.07 16 2 O -0.34 -16.10 9.61 -89.29 -0.86 -16.96 16 3 C -0.10 -5.26 6.74 23.23 0.16 -5.10 16 4 C -0.11 -5.03 9.12 22.51 0.21 -4.82 16 5 C -0.35 -15.22 9.24 22.70 0.21 -15.01 16 6 C 0.38 18.10 7.65 133.45 1.02 19.12 16 7 N -0.71 -27.64 4.77 -319.64 -1.53 -29.17 16 8 C 0.13 3.93 2.89 45.98 0.13 4.06 16 9 H 0.09 2.64 6.55 -2.38 -0.02 2.63 16 10 C 0.04 1.07 7.50 72.35 0.54 1.62 16 11 O -0.39 -11.06 11.52 -148.98 -1.72 -12.77 16 12 C 0.05 1.21 7.41 72.66 0.54 1.75 16 13 C 0.06 1.33 4.20 46.22 0.19 1.53 16 14 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 15 N -0.84 -18.68 7.91 -163.30 -1.29 -19.97 16 16 N -0.54 -30.37 7.88 -186.17 -1.47 -31.83 16 17 C 0.25 14.65 6.56 40.23 0.26 14.92 16 18 C -0.45 -25.89 8.94 23.36 0.21 -25.69 16 19 H 0.08 4.62 7.31 -2.91 -0.02 4.60 16 20 C 0.03 1.35 5.50 85.28 0.47 1.81 16 21 N -0.74 -40.61 11.45 21.84 0.25 -40.36 16 22 Si 0.98 39.87 29.56 68.60 2.03 41.90 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.05 1.45 7.69 -2.39 -0.02 1.44 16 28 H 0.05 1.44 7.69 -2.39 -0.02 1.43 16 29 H 0.13 4.88 6.44 -2.91 -0.02 4.87 16 30 H 0.12 4.46 6.23 -2.91 -0.02 4.44 16 31 H 0.40 16.71 7.76 -92.71 -0.72 15.99 16 32 H 0.04 1.48 7.93 -2.39 -0.02 1.46 16 33 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.36 5.82 9.08 -89.69 -0.81 5.00 16 37 H 0.35 8.46 8.92 -89.70 -0.80 7.66 16 38 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 Total: -1.00 -68.08 314.19 -0.73 -68.82 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -1.21 Total: 44.09 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.06 Total: -3.74 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -4.03 Total: -121.33 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -2.57 Total: -29.74 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -68.08 -0.73 -68.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162919860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.781 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds