Wall clock time and date at job start Tue Mar 31 2020 02:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00189 * 2 1 4 4 C 1.39213 * 120.81482 * 0.02562 * 3 2 1 5 5 C 1.38314 * 119.29120 * 179.97438 * 4 3 2 6 6 N 1.31618 * 120.97054 * 0.02562 * 5 4 3 7 7 C 1.32802 * 121.77923 * 359.69850 * 6 5 4 8 8 C 1.48180 * 119.69916 * 180.29612 * 7 6 5 9 9 O 1.21508 * 120.00162 * 180.29033 * 8 7 6 10 10 N 1.34783 * 119.99913 * 0.28883 * 8 7 6 11 11 C 1.46494 * 120.00028 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47089 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47029 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.36933 * 120.00012 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00104 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00175 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99909 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00224 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47417 * 120.00181 * 19 17 15 22 22 H 1.48500 * 109.47213 * 240.00285 * 19 17 15 23 23 C 1.39102 * 120.60316 * 0.58809 * 7 6 5 24 24 H 1.08997 * 109.47002 * 299.99956 * 1 2 3 25 25 H 1.08999 * 109.47110 * 59.99685 * 1 2 3 26 26 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.35270 * 359.95559 * 4 3 2 28 28 H 1.07994 * 119.51333 * 179.97438 * 5 4 3 29 29 H 0.97006 * 119.99571 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47448 * 299.99919 * 11 10 8 31 31 H 1.09005 * 109.46925 * 59.99867 * 11 10 8 32 32 H 1.08995 * 109.47073 * 300.00348 * 12 11 10 33 33 H 1.08999 * 109.46496 * 60.00281 * 12 11 10 34 34 H 1.09000 * 109.47119 * 300.00725 * 13 12 11 35 35 H 1.09005 * 109.47021 * 60.00045 * 13 12 11 36 36 H 0.97002 * 120.00263 * 0.02562 * 14 13 12 37 37 H 0.97005 * 119.99570 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.51064 * 179.70864 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6591 0.0006 7 6 4.0262 2.5610 0.0055 8 6 5.5034 2.6779 0.0113 9 8 6.1921 1.6769 0.0105 10 7 6.0831 3.8947 0.0175 11 6 7.5434 4.0104 0.0227 12 6 7.9380 5.4887 0.0285 13 6 9.4632 5.6094 0.0333 14 7 9.8409 7.0248 0.0396 15 6 11.1632 7.3805 0.0452 16 1 11.9278 6.6176 0.0446 17 6 11.5212 8.7217 0.0505 18 7 10.5896 9.6515 0.0507 19 14 13.3251 9.2070 0.0574 20 1 14.1668 7.9835 0.0554 21 1 13.6249 10.0155 -1.1515 22 1 13.6177 10.0076 1.2734 23 6 3.4346 1.3021 -0.0009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2243 2.3532 0.0002 28 1 1.3927 4.5192 0.0011 29 1 5.5332 4.6939 0.0177 30 1 7.9433 3.5237 0.9122 31 1 7.9491 3.5299 -0.8677 32 1 7.5381 5.9749 -0.8612 33 1 7.5322 5.9694 0.9187 34 1 9.8634 5.1229 0.9229 35 1 9.8685 5.1287 -0.8571 36 1 9.1544 7.7101 0.0405 37 1 10.8398 10.5887 0.0549 38 1 4.0435 0.4101 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163756019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:35 Heat of formation + Delta-G solvation = -29.259078 kcal Electronic energy + Delta-G solvation = -20115.782870 eV Core-core repulsion = 16766.043938 eV Total energy + Delta-G solvation = -3349.738932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19965 -39.65504 -38.36313 -36.03220 -34.35574 -32.29189 -32.02008 -31.53400 -29.47957 -28.16837 -25.75148 -24.07511 -23.78933 -22.43628 -21.17258 -20.68552 -18.94070 -17.71431 -17.06349 -16.55746 -16.43560 -16.14876 -15.82874 -15.69650 -15.00687 -14.62562 -14.56803 -14.27295 -13.94218 -13.63994 -13.24902 -13.03474 -12.84831 -12.41220 -12.12327 -11.86305 -11.62154 -10.93624 -10.90416 -10.78052 -10.58638 -10.42593 -10.03361 -9.88403 -9.69629 -9.67876 -9.38064 -9.01908 -8.85642 -6.90263 -5.74534 -3.03273 0.26871 0.85772 2.46276 2.55387 3.11981 3.45698 3.51321 3.53717 3.56339 3.87856 4.12520 4.35734 4.53905 4.56478 4.61616 4.67238 4.85044 4.90264 5.14833 5.20429 5.34933 5.35384 5.55330 5.60235 5.67821 5.92356 6.02676 6.10386 6.23332 6.36192 6.45609 6.64505 6.83257 6.87396 7.28585 7.58460 7.73323 8.10527 8.44500 9.55617 10.13213 10.47877 11.48546 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.055539 B = 0.002278 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.024812 B =12290.248446 C =12763.208666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.162 3.838 4 C -0.246 4.246 5 C 0.138 3.862 6 N -0.481 5.481 7 C 0.119 3.881 8 C 0.568 3.432 9 O -0.532 6.532 10 N -0.703 5.703 11 C 0.120 3.880 12 C -0.138 4.138 13 C 0.156 3.844 14 N -0.734 5.734 15 C -0.238 4.238 16 H 0.072 0.928 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.144 4.144 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.144 0.856 28 H 0.167 0.833 29 H 0.412 0.588 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.177 -17.193 -0.110 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.109 3.891 4 C -0.267 4.267 5 C -0.021 4.021 6 N -0.196 5.196 7 C -0.019 4.019 8 C 0.351 3.649 9 O -0.409 6.409 10 N -0.354 5.354 11 C -0.003 4.003 12 C -0.176 4.176 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.162 0.838 28 H 0.184 0.816 29 H 0.249 0.751 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.944 -17.353 -0.114 29.571 hybrid contribution -0.373 0.313 0.003 0.487 sum -24.317 -17.040 -0.112 29.693 Atomic orbital electron populations 1.23188 0.77444 1.04675 1.01779 1.86104 1.22111 1.25940 1.87714 1.19210 0.92122 0.84884 0.92909 1.22427 1.01871 0.93200 1.09153 1.22614 0.89611 0.97287 0.92601 1.67635 1.07414 1.31182 1.13390 1.21017 0.94461 0.88651 0.97729 1.17756 0.85631 0.84033 0.77433 1.90801 1.63346 1.36592 1.50126 1.45918 1.08578 1.08198 1.72685 1.21459 0.78229 0.97913 1.02718 1.21948 0.98898 0.93808 1.02962 1.20523 0.90267 0.88157 0.98229 1.42349 1.05372 1.00526 1.89566 1.19301 0.83916 0.91351 1.42388 0.91020 1.24763 0.97604 0.95734 1.03104 1.69678 1.31099 0.99542 1.57983 0.86090 0.84668 0.78138 0.77153 1.20515 1.21878 1.21872 1.21409 0.91997 0.99825 1.03398 0.92146 0.92154 0.87615 0.83829 0.81565 0.75141 0.91005 0.91015 0.91144 0.91143 0.96012 0.96003 0.78267 0.93582 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.84 101.05 0.99 1.08 16 2 O -0.31 -2.48 10.51 -18.94 -0.20 -2.68 16 3 C 0.16 1.46 6.73 -38.85 -0.26 1.20 16 4 C -0.25 -1.69 9.12 -39.19 -0.36 -2.05 16 5 C 0.14 1.08 11.17 -17.62 -0.20 0.88 16 6 N -0.48 -5.20 9.54 -9.87 -0.09 -5.29 16 7 C 0.12 1.44 6.75 -83.04 -0.56 0.88 16 8 C 0.57 8.09 7.81 -12.17 -0.10 8.00 16 9 O -0.53 -9.02 16.32 5.36 0.09 -8.93 16 10 N -0.70 -9.33 5.55 -61.14 -0.34 -9.67 16 11 C 0.12 1.72 5.67 -4.04 -0.02 1.69 16 12 C -0.14 -2.19 5.44 -26.73 -0.15 -2.34 16 13 C 0.16 3.18 6.26 -4.04 -0.03 3.15 16 14 N -0.73 -18.97 5.60 -59.91 -0.34 -19.30 16 15 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 16 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 18 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 C -0.14 -1.60 9.60 -38.89 -0.37 -1.97 16 24 H 0.06 0.15 7.71 -51.93 -0.40 -0.25 16 25 H 0.06 0.15 7.71 -51.93 -0.40 -0.25 16 26 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.14 0.53 6.45 -52.48 -0.34 0.19 16 28 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 29 H 0.41 4.92 7.80 -40.82 -0.32 4.60 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 10.32 7.67 -40.82 -0.31 10.00 16 37 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.16 1.75 7.64 -52.49 -0.40 1.35 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -34.53 331.49 -6.57 -41.10 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.10 Total: 6.99 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.29 Total: 2.98 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.04 Total: -62.15 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.11 Total: -11.62 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.53 -6.57 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163756019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.840 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds