Wall clock time and date at job start Tue Mar 31 2020 02:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00189 * 2 1 4 4 C 1.39213 * 120.81482 * 0.02562 * 3 2 1 5 5 C 1.38314 * 119.29120 * 179.97438 * 4 3 2 6 6 N 1.31618 * 120.97054 * 0.02562 * 5 4 3 7 7 C 1.32802 * 121.77923 * 359.69850 * 6 5 4 8 8 C 1.48180 * 119.69916 * 180.29612 * 7 6 5 9 9 O 1.21508 * 120.00162 * 180.29033 * 8 7 6 10 10 N 1.34783 * 119.99913 * 0.28883 * 8 7 6 11 11 C 1.46494 * 120.00028 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47089 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47029 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.36933 * 120.00012 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00104 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00175 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99909 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00224 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47417 * 120.00181 * 19 17 15 22 22 H 1.48500 * 109.47213 * 240.00285 * 19 17 15 23 23 C 1.39102 * 120.60316 * 0.58809 * 7 6 5 24 24 H 1.08997 * 109.47002 * 299.99956 * 1 2 3 25 25 H 1.08999 * 109.47110 * 59.99685 * 1 2 3 26 26 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.35270 * 359.95559 * 4 3 2 28 28 H 1.07994 * 119.51333 * 179.97438 * 5 4 3 29 29 H 0.97006 * 119.99571 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47448 * 299.99919 * 11 10 8 31 31 H 1.09005 * 109.46925 * 59.99867 * 11 10 8 32 32 H 1.08995 * 109.47073 * 300.00348 * 12 11 10 33 33 H 1.08999 * 109.46496 * 60.00281 * 12 11 10 34 34 H 1.09000 * 109.47119 * 300.00725 * 13 12 11 35 35 H 1.09005 * 109.47021 * 60.00045 * 13 12 11 36 36 H 0.97002 * 120.00263 * 0.02562 * 14 13 12 37 37 H 0.97005 * 119.99570 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.51064 * 179.70864 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6591 0.0006 7 6 4.0262 2.5610 0.0055 8 6 5.5034 2.6779 0.0113 9 8 6.1921 1.6769 0.0105 10 7 6.0831 3.8947 0.0175 11 6 7.5434 4.0104 0.0227 12 6 7.9380 5.4887 0.0285 13 6 9.4632 5.6094 0.0333 14 7 9.8409 7.0248 0.0396 15 6 11.1632 7.3805 0.0452 16 1 11.9278 6.6176 0.0446 17 6 11.5212 8.7217 0.0505 18 7 10.5896 9.6515 0.0507 19 14 13.3251 9.2070 0.0574 20 1 14.1668 7.9835 0.0554 21 1 13.6249 10.0155 -1.1515 22 1 13.6177 10.0076 1.2734 23 6 3.4346 1.3021 -0.0009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2243 2.3532 0.0002 28 1 1.3927 4.5192 0.0011 29 1 5.5332 4.6939 0.0177 30 1 7.9433 3.5237 0.9122 31 1 7.9491 3.5299 -0.8677 32 1 7.5381 5.9749 -0.8612 33 1 7.5322 5.9694 0.9187 34 1 9.8634 5.1229 0.9229 35 1 9.8685 5.1287 -0.8571 36 1 9.1544 7.7101 0.0405 37 1 10.8398 10.5887 0.0549 38 1 4.0435 0.4101 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163756019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:35 Heat of formation + Delta-G solvation = -55.522416 kcal Electronic energy + Delta-G solvation = -20116.921734 eV Core-core repulsion = 16766.043938 eV Total energy + Delta-G solvation = -3350.877796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92879 -40.58572 -39.07702 -37.53693 -35.97503 -33.83870 -32.72528 -32.59256 -31.11774 -28.57875 -27.23233 -25.39572 -24.44881 -23.95880 -22.57948 -21.71901 -19.81896 -19.07574 -18.41750 -17.46035 -17.04957 -17.03629 -16.77048 -16.69962 -16.52723 -15.79975 -15.62252 -15.29314 -15.24202 -14.81155 -14.62705 -14.52575 -13.80447 -13.40723 -13.30893 -12.84162 -12.59878 -12.54690 -12.44253 -12.32585 -12.06871 -12.03362 -11.80046 -11.44542 -10.95006 -10.73906 -10.45746 -10.12409 -10.00616 -9.01137 -7.95898 -5.25160 -0.49837 0.18700 1.48362 1.49245 1.59665 1.61265 1.78021 2.27342 2.56766 2.76626 3.07086 3.37933 3.57026 3.75117 3.77894 3.95052 4.08053 4.10891 4.29261 4.33066 4.38461 4.44722 4.48988 4.68076 4.71534 4.72655 4.75966 4.86797 4.91762 5.24819 5.31930 5.32021 5.37200 5.49921 6.12849 6.26745 6.33386 6.75370 7.04677 7.33138 8.07949 8.31798 9.27880 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.055539 B = 0.002278 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.024812 B =12290.248446 C =12763.208666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.158 3.842 4 C -0.225 4.225 5 C 0.135 3.865 6 N -0.497 5.497 7 C 0.099 3.901 8 C 0.566 3.434 9 O -0.568 6.568 10 N -0.696 5.696 11 C 0.130 3.870 12 C -0.119 4.119 13 C 0.153 3.847 14 N -0.747 5.747 15 C -0.248 4.248 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.976 3.024 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.161 4.161 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.183 0.817 28 H 0.203 0.797 29 H 0.420 0.580 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.375 0.625 37 H 0.252 0.748 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.093 -17.428 -0.113 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.104 3.896 4 C -0.246 4.246 5 C -0.024 4.024 6 N -0.213 5.213 7 C -0.037 4.037 8 C 0.351 3.649 9 O -0.448 6.448 10 N -0.347 5.347 11 C 0.006 3.994 12 C -0.157 4.157 13 C 0.026 3.974 14 N -0.390 5.390 15 C -0.380 4.380 16 H 0.094 0.906 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.183 4.183 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.139 0.861 27 H 0.201 0.799 28 H 0.220 0.780 29 H 0.257 0.743 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.207 0.793 37 H 0.061 0.939 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.881 -17.618 -0.117 31.309 hybrid contribution 0.054 0.292 0.003 0.297 sum -25.827 -17.326 -0.115 31.100 Atomic orbital electron populations 1.23551 0.75023 1.06352 1.03239 1.86092 1.24617 1.25665 1.87471 1.19266 0.91497 0.86143 0.92650 1.22816 1.03650 0.91782 1.06331 1.23285 0.88695 0.99152 0.91222 1.67605 1.08965 1.30595 1.14140 1.20635 0.93247 0.89580 1.00273 1.18135 0.86787 0.83519 0.76459 1.90767 1.64493 1.37627 1.51876 1.45801 1.08077 1.08466 1.72359 1.21239 0.79053 0.96521 1.02549 1.21702 0.95781 0.94905 1.03294 1.20677 0.93251 0.85323 0.98175 1.42556 1.04431 1.02510 1.89525 1.19701 0.85297 0.91691 1.41280 0.90595 1.25616 1.01909 0.95834 1.03611 1.69825 1.33078 0.99605 1.59456 0.85031 0.79784 0.77944 0.76735 1.19103 1.21892 1.21880 1.21373 0.93408 0.99007 1.04538 0.90598 0.90607 0.86096 0.79945 0.78010 0.74252 0.91239 0.91253 0.90810 0.90805 0.95779 0.95768 0.79252 0.93911 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.84 113.37 1.12 1.17 16 2 O -0.33 -4.79 10.51 -90.68 -0.95 -5.75 16 3 C 0.16 2.63 6.73 22.75 0.15 2.79 16 4 C -0.23 -2.38 9.12 22.52 0.21 -2.18 16 5 C 0.14 1.72 11.17 84.74 0.95 2.67 16 6 N -0.50 -10.15 9.54 -185.14 -1.77 -11.92 16 7 C 0.10 2.43 6.75 41.85 0.28 2.71 16 8 C 0.57 16.55 7.81 86.88 0.68 17.23 16 9 O -0.57 -20.10 16.32 -3.74 -0.06 -20.16 16 10 N -0.70 -18.47 5.55 -465.65 -2.58 -21.05 16 11 C 0.13 3.70 5.67 86.38 0.49 4.19 16 12 C -0.12 -3.71 5.44 30.60 0.17 -3.55 16 13 C 0.15 6.16 6.26 86.38 0.54 6.70 16 14 N -0.75 -38.74 5.60 -343.45 -1.92 -40.66 16 15 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 18 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 19 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.16 -3.64 9.60 22.72 0.22 -3.42 16 24 H 0.08 0.11 7.71 -2.39 -0.02 0.09 16 25 H 0.08 0.11 7.71 -2.39 -0.02 0.09 16 26 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.18 0.43 6.45 -2.91 -0.02 0.41 16 28 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 29 H 0.42 9.82 7.80 -92.70 -0.72 9.09 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.38 20.40 7.67 -92.71 -0.71 19.69 16 37 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 38 H 0.14 3.46 7.64 -2.91 -0.02 3.44 16 Total: -1.00 -75.13 331.49 0.78 -74.35 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.34 Total: 25.05 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.10 Total: 10.92 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -5.99 Total: -133.19 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.01 Total: -25.90 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.13 0.78 -74.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163756019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.826 kcal (2) G-P(sol) polarization free energy of solvation -75.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds