Wall clock time and date at job start Tue Mar 31 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35426 * 117.00519 * 2 1 4 4 N 1.32243 * 119.79609 * 0.02562 * 3 2 1 5 5 C 1.31872 * 121.79859 * 180.02562 * 4 3 2 6 6 C 1.38360 * 121.18952 * 359.97438 * 5 4 3 7 7 C 1.38328 * 119.45481 * 0.25624 * 6 5 4 8 8 C 1.39993 * 118.34897 * 359.50597 * 7 6 5 9 9 C 1.47527 * 120.59455 * 180.22249 * 8 7 6 10 10 O 1.21597 * 119.99974 * 180.27330 * 9 8 7 11 11 N 1.34775 * 120.00460 * 0.27321 * 9 8 7 12 12 C 1.46495 * 120.00317 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47605 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47625 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47187 * 179.97438 * 14 13 12 16 16 C 1.36933 * 119.99946 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00075 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99864 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00422 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47112 * 59.99899 * 20 18 16 22 22 H 1.48497 * 109.47270 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47029 * 300.00289 * 20 18 16 24 24 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46702 * 299.99795 * 1 2 3 26 26 H 1.08997 * 109.46749 * 59.99566 * 1 2 3 27 27 H 1.08006 * 119.40379 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.27035 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.82512 * 179.74837 * 7 6 5 30 30 H 0.96996 * 119.99954 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.46910 * 299.99975 * 12 11 9 32 32 H 1.09004 * 109.47780 * 59.99444 * 12 11 9 33 33 H 1.09009 * 109.46830 * 299.99857 * 13 12 11 34 34 H 1.09004 * 109.47141 * 59.98887 * 13 12 11 35 35 H 1.09003 * 109.46824 * 299.99471 * 14 13 12 36 36 H 1.08998 * 109.47007 * 59.99493 * 14 13 12 37 37 H 0.97001 * 119.99953 * 359.97438 * 15 14 13 38 38 H 0.96991 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3132 0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2528 3.6574 -0.0005 7 6 4.0588 2.5333 -0.0059 8 6 3.4450 1.2751 -0.0001 9 6 4.2570 0.0435 -0.0005 10 8 3.7125 -1.0438 -0.0005 11 7 5.6024 0.1232 -0.0011 12 6 6.4088 -1.0998 -0.0021 13 6 7.8938 -0.7318 -0.0018 14 6 8.7359 -2.0091 -0.0022 15 7 10.1579 -1.6566 -0.0026 16 6 11.1078 -2.6429 -0.0036 17 1 10.8088 -3.6806 -0.0036 18 6 12.4551 -2.3088 -0.0045 19 7 12.8196 -1.0441 -0.0039 20 14 13.7510 -3.6543 -0.0050 21 1 13.5894 -4.4967 -1.2173 22 1 15.1028 -3.0396 -0.0054 23 1 13.5909 -4.4963 1.2077 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2486 4.3866 0.0009 28 1 3.6935 4.6434 -0.0013 29 1 5.1350 2.6240 -0.0105 30 1 6.0368 0.9905 -0.0007 31 1 6.1801 -1.6865 0.8878 32 1 6.1794 -1.6857 -0.8922 33 1 8.1228 -0.1449 -0.8914 34 1 8.1229 -0.1462 0.8885 35 1 8.5069 -2.5956 0.8876 36 1 8.5069 -2.5950 -0.8924 37 1 10.4265 -0.7245 -0.0030 38 1 13.7611 -0.8108 -0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165748031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:38 Heat of formation + Delta-G solvation = -25.789656 kcal Electronic energy + Delta-G solvation = -20508.538730 eV Core-core repulsion = 17158.950243 eV Total energy + Delta-G solvation = -3349.588487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17788 -39.20804 -38.16670 -35.99163 -34.37947 -33.16314 -31.82912 -31.16775 -29.48329 -27.53537 -25.73498 -24.43390 -23.27244 -22.48799 -21.22431 -20.57613 -18.82373 -17.77367 -17.40783 -16.92258 -16.37292 -15.73276 -15.54598 -15.40546 -14.78636 -14.46768 -14.33889 -14.24549 -13.60519 -13.44662 -13.25559 -12.98922 -12.90086 -12.40204 -12.03066 -11.63768 -11.51363 -10.95440 -10.90966 -10.78900 -10.61124 -10.36797 -10.34277 -10.11175 -9.80115 -9.66926 -9.09320 -8.87463 -8.82205 -6.93548 -5.77155 -3.06031 0.34281 0.86577 2.75447 2.76805 3.06656 3.45004 3.48958 3.50284 3.54345 3.89419 4.34184 4.44685 4.58965 4.61609 4.80316 5.01554 5.02933 5.05933 5.19279 5.32173 5.36275 5.43608 5.57717 5.63385 5.64445 5.92396 5.99962 6.07437 6.19283 6.32303 6.45665 6.79391 6.83716 6.91598 7.33970 7.49352 7.69961 8.19438 8.41999 9.53004 10.10059 10.44793 11.45895 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038836 B = 0.002562 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.813292 B =10925.967662 C =11615.728961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.270 6.270 3 C 0.371 3.629 4 N -0.547 5.547 5 C 0.164 3.836 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.208 4.208 9 C 0.560 3.440 10 O -0.517 6.517 11 N -0.725 5.725 12 C 0.124 3.876 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.936 5.936 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.397 0.603 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.383 0.617 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.258 11.816 -0.003 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.174 6.174 3 C 0.191 3.809 4 N -0.271 5.271 5 C 0.007 3.993 6 C -0.241 4.241 7 C -0.034 4.034 8 C -0.214 4.214 9 C 0.346 3.654 10 O -0.393 6.393 11 N -0.377 5.377 12 C 0.001 3.999 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.182 0.818 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.232 0.768 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.369 10.438 -0.001 27.432 hybrid contribution 1.762 0.384 -0.003 1.803 sum -23.607 10.822 -0.004 25.970 Atomic orbital electron populations 1.22964 0.77491 1.03391 1.02233 1.86547 1.22354 1.22964 1.85517 1.19880 0.88159 0.85152 0.87715 1.67487 1.40380 0.98704 1.20555 1.22673 0.93126 0.93743 0.89722 1.21952 0.94736 1.00017 1.07354 1.21705 1.00862 0.90527 0.90314 1.20090 0.91680 0.95156 1.14507 1.17756 0.82064 0.88268 0.77326 1.90841 1.71637 1.28347 1.48515 1.45944 1.05671 1.10474 1.75659 1.21374 0.89964 0.85931 1.02657 1.21952 0.92472 1.00480 1.02706 1.20520 0.85204 0.93201 0.98265 1.42331 0.99151 1.06694 1.89639 1.19206 0.86645 0.88576 1.42702 0.91133 1.24749 0.97079 0.96236 1.02997 1.69643 1.15780 1.15167 1.57832 0.86239 0.80995 0.80884 0.77908 1.21216 1.21674 1.21221 0.88288 0.92253 0.92260 0.81832 0.83717 0.83580 0.76801 0.91185 0.91179 0.91278 0.91278 0.95996 0.96005 0.78311 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.38 101.05 1.05 1.36 16 2 O -0.27 -3.61 8.58 -39.74 -0.34 -3.96 16 3 C 0.37 4.59 7.51 -16.61 -0.12 4.47 16 4 N -0.55 -5.65 9.21 -12.98 -0.12 -5.77 16 5 C 0.16 1.18 11.17 -17.49 -0.20 0.98 16 6 C -0.22 -1.39 10.09 -39.50 -0.40 -1.79 16 7 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 8 C -0.21 -2.43 5.90 -104.69 -0.62 -3.05 16 9 C 0.56 7.90 7.77 -12.47 -0.10 7.80 16 10 O -0.52 -9.26 15.19 -16.49 -0.25 -9.51 16 11 N -0.72 -8.76 5.51 -61.35 -0.34 -9.09 16 12 C 0.12 1.72 5.67 -4.05 -0.02 1.70 16 13 C -0.14 -2.10 5.44 -26.73 -0.15 -2.24 16 14 C 0.16 3.12 6.26 -4.04 -0.03 3.10 16 15 N -0.73 -18.71 5.60 -59.91 -0.34 -19.04 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.94 -28.35 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.16 0.61 8.06 -52.48 -0.42 0.18 16 28 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 29 H 0.15 0.78 6.52 -52.49 -0.34 0.44 16 30 H 0.40 3.62 6.57 -40.82 -0.27 3.35 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -35.65 329.56 -7.03 -42.68 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.12 Total: 5.43 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.20 Total: 4.40 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.07 Total: -61.53 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.59 Total: -13.47 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.65 -7.03 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165748031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.890 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds