Wall clock time and date at job start Tue Mar 31 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35426 * 117.00519 * 2 1 4 4 N 1.32243 * 119.79609 * 0.02562 * 3 2 1 5 5 C 1.31872 * 121.79859 * 180.02562 * 4 3 2 6 6 C 1.38360 * 121.18952 * 359.97438 * 5 4 3 7 7 C 1.38328 * 119.45481 * 0.25624 * 6 5 4 8 8 C 1.39993 * 118.34897 * 359.50597 * 7 6 5 9 9 C 1.47527 * 120.59455 * 180.22249 * 8 7 6 10 10 O 1.21597 * 119.99974 * 180.27330 * 9 8 7 11 11 N 1.34775 * 120.00460 * 0.27321 * 9 8 7 12 12 C 1.46495 * 120.00317 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47605 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47625 * 179.97438 * 13 12 11 15 15 N 1.46504 * 109.47187 * 179.97438 * 14 13 12 16 16 C 1.36933 * 119.99946 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00075 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99864 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00422 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47112 * 59.99899 * 20 18 16 22 22 H 1.48497 * 109.47270 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47029 * 300.00289 * 20 18 16 24 24 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46702 * 299.99795 * 1 2 3 26 26 H 1.08997 * 109.46749 * 59.99566 * 1 2 3 27 27 H 1.08006 * 119.40379 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.27035 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.82512 * 179.74837 * 7 6 5 30 30 H 0.96996 * 119.99954 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.46910 * 299.99975 * 12 11 9 32 32 H 1.09004 * 109.47780 * 59.99444 * 12 11 9 33 33 H 1.09009 * 109.46830 * 299.99857 * 13 12 11 34 34 H 1.09004 * 109.47141 * 59.98887 * 13 12 11 35 35 H 1.09003 * 109.46824 * 299.99471 * 14 13 12 36 36 H 1.08998 * 109.47007 * 59.99493 * 14 13 12 37 37 H 0.97001 * 119.99953 * 359.97438 * 15 14 13 38 38 H 0.96991 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3132 0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2528 3.6574 -0.0005 7 6 4.0588 2.5333 -0.0059 8 6 3.4450 1.2751 -0.0001 9 6 4.2570 0.0435 -0.0005 10 8 3.7125 -1.0438 -0.0005 11 7 5.6024 0.1232 -0.0011 12 6 6.4088 -1.0998 -0.0021 13 6 7.8938 -0.7318 -0.0018 14 6 8.7359 -2.0091 -0.0022 15 7 10.1579 -1.6566 -0.0026 16 6 11.1078 -2.6429 -0.0036 17 1 10.8088 -3.6806 -0.0036 18 6 12.4551 -2.3088 -0.0045 19 7 12.8196 -1.0441 -0.0039 20 14 13.7510 -3.6543 -0.0050 21 1 13.5894 -4.4967 -1.2173 22 1 15.1028 -3.0396 -0.0054 23 1 13.5909 -4.4963 1.2077 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2486 4.3866 0.0009 28 1 3.6935 4.6434 -0.0013 29 1 5.1350 2.6240 -0.0105 30 1 6.0368 0.9905 -0.0007 31 1 6.1801 -1.6865 0.8878 32 1 6.1794 -1.6857 -0.8922 33 1 8.1228 -0.1449 -0.8914 34 1 8.1229 -0.1462 0.8885 35 1 8.5069 -2.5956 0.8876 36 1 8.5069 -2.5950 -0.8924 37 1 10.4265 -0.7245 -0.0030 38 1 13.7611 -0.8108 -0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165748031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:37 Heat of formation + Delta-G solvation = -53.011723 kcal Electronic energy + Delta-G solvation = -20509.719167 eV Core-core repulsion = 17158.950243 eV Total energy + Delta-G solvation = -3350.768924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94207 -40.23570 -38.91389 -37.48841 -35.92209 -34.18264 -33.36317 -31.91855 -31.08054 -28.27286 -27.16158 -25.58084 -24.34611 -23.73931 -22.58242 -21.68289 -19.62079 -19.19405 -18.45388 -18.16736 -17.20285 -16.94214 -16.71043 -16.44109 -15.99388 -15.56097 -15.53803 -15.27982 -15.10707 -14.79550 -14.38551 -14.05232 -13.80727 -13.54583 -13.29436 -12.78624 -12.73148 -12.59689 -12.42665 -12.21608 -12.09629 -12.04453 -11.79378 -11.23668 -11.05404 -10.93369 -10.65814 -10.16447 -9.55745 -9.01557 -7.96251 -5.25325 -0.36171 0.22933 1.48121 1.51124 1.57252 1.84086 2.02426 2.10699 2.56716 2.79165 3.25978 3.37486 3.68460 3.73364 3.82502 3.98002 4.09199 4.21680 4.29796 4.38450 4.38854 4.42705 4.52738 4.70039 4.73393 4.73451 4.87902 4.90142 5.08278 5.27317 5.32185 5.37628 5.42481 5.49014 6.19011 6.26652 6.48705 6.73584 7.18953 7.33169 8.07705 8.32039 9.27101 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038836 B = 0.002562 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.813292 B =10925.967662 C =11615.728961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.347 3.653 4 N -0.561 5.561 5 C 0.164 3.836 6 C -0.206 4.206 7 C -0.004 4.004 8 C -0.237 4.237 9 C 0.558 3.442 10 O -0.566 6.566 11 N -0.712 5.712 12 C 0.135 3.865 13 C -0.117 4.117 14 C 0.152 3.848 15 N -0.746 5.746 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.278 1.278 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.202 0.798 28 H 0.185 0.815 29 H 0.173 0.827 30 H 0.413 0.587 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.376 0.624 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.498 13.594 -0.005 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.167 3.833 4 N -0.286 5.286 5 C 0.007 3.993 6 C -0.225 4.225 7 C -0.030 4.030 8 C -0.243 4.243 9 C 0.346 3.654 10 O -0.446 6.446 11 N -0.365 5.365 12 C 0.011 3.989 13 C -0.156 4.156 14 C 0.025 3.975 15 N -0.389 5.389 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.204 1.204 24 H 0.129 0.871 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.219 0.781 28 H 0.202 0.798 29 H 0.190 0.810 30 H 0.251 0.749 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.209 0.791 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.630 12.235 -0.003 28.400 hybrid contribution 1.740 -0.063 -0.002 1.741 sum -23.890 12.172 -0.006 26.812 Atomic orbital electron populations 1.23105 0.76062 1.04390 1.02615 1.86494 1.24096 1.24380 1.85964 1.20124 0.88670 0.85469 0.88993 1.67540 1.40662 0.99204 1.21173 1.23461 0.94450 0.93688 0.87694 1.22411 0.94203 1.01116 1.04796 1.22076 1.02408 0.89473 0.89008 1.20043 0.91393 0.95409 1.17429 1.18192 0.82396 0.88641 0.76206 1.90805 1.72544 1.30318 1.50937 1.45736 1.05136 1.10661 1.74974 1.21104 0.89273 0.86599 1.01971 1.21701 0.92187 0.98181 1.03491 1.20673 0.83288 0.95603 0.97962 1.42524 1.00953 1.05901 1.89570 1.19607 0.87610 0.89395 1.41663 0.90817 1.25575 0.99156 0.98443 1.03481 1.69788 1.15844 1.16975 1.59265 0.85202 0.78023 0.78277 0.78201 1.20407 1.21882 1.20422 0.87070 0.91809 0.91815 0.78122 0.79762 0.80976 0.74868 0.91993 0.91980 0.90464 0.90468 0.96056 0.96067 0.79146 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.38 113.37 1.18 1.79 16 2 O -0.30 -8.54 8.58 -66.40 -0.57 -9.11 16 3 C 0.35 8.63 7.51 85.13 0.64 9.27 16 4 N -0.56 -10.91 9.21 -308.00 -2.84 -13.75 16 5 C 0.16 1.83 11.17 84.72 0.95 2.78 16 6 C -0.21 -1.78 10.09 22.32 0.23 -1.56 16 7 C 0.00 -0.05 9.64 22.72 0.22 0.17 16 8 C -0.24 -5.41 5.90 -19.91 -0.12 -5.52 16 9 C 0.56 15.87 7.77 86.69 0.67 16.54 16 10 O -0.57 -21.16 15.19 16.79 0.26 -20.90 16 11 N -0.71 -16.55 5.51 -466.27 -2.57 -19.12 16 12 C 0.13 3.68 5.67 86.38 0.49 4.17 16 13 C -0.12 -3.44 5.44 30.59 0.17 -3.27 16 14 C 0.15 6.00 6.26 86.38 0.54 6.54 16 15 N -0.75 -37.93 5.60 -343.45 -1.92 -39.85 16 16 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 17 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 18 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 19 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 20 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 26 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 27 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 28 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 29 H 0.17 1.21 6.52 -2.91 -0.02 1.20 16 30 H 0.41 6.67 6.57 -92.71 -0.61 6.06 16 31 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.38 19.87 7.67 -92.71 -0.71 19.16 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -78.69 329.56 0.70 -77.99 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.23 Total: 21.35 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.27 Total: 13.76 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -7.05 Total: -131.28 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.31 Total: -30.01 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -78.69 0.70 -77.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165748031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.981 kcal (2) G-P(sol) polarization free energy of solvation -78.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds