Wall clock time and date at job start Tue Mar 31 2020 01:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36953 * 119.70105 * 2 1 4 4 C 1.47889 * 119.75625 * 359.97438 * 3 2 1 5 5 O 1.21543 * 119.99893 * 354.07564 * 4 3 2 6 6 N 1.34768 * 119.99954 * 173.79938 * 4 3 2 7 7 C 1.46499 * 120.00278 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47645 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47419 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47196 * 180.02562 * 9 8 7 11 11 C 1.36943 * 120.00133 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99615 * 359.97438 * 11 10 9 13 13 C 1.38810 * 119.99994 * 179.97438 * 11 10 9 14 14 N 1.31614 * 120.00190 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99727 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47168 * 60.00140 * 15 13 11 17 17 H 1.48494 * 109.46973 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47038 * 300.00081 * 15 13 11 19 19 C 1.36290 * 120.48865 * 179.70223 * 3 2 1 20 20 C 1.40413 * 119.90660 * 0.27862 * 19 3 2 21 21 C 1.36108 * 119.41407 * 0.02562 * 20 19 3 22 22 C 1.34666 * 119.70609 * 180.26527 * 2 1 3 23 23 O 1.21961 * 119.95818 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47626 * 64.74667 * 1 2 3 25 25 H 1.09000 * 109.47408 * 184.74918 * 1 2 3 26 26 H 1.08998 * 109.47666 * 304.74732 * 1 2 3 27 27 H 0.96999 * 120.00545 * 359.97438 * 6 4 3 28 28 H 1.08997 * 109.47405 * 300.00962 * 7 6 4 29 29 H 1.09003 * 109.46599 * 59.99998 * 7 6 4 30 30 H 1.09006 * 109.47157 * 300.00507 * 8 7 6 31 31 H 1.09003 * 109.47319 * 60.00200 * 8 7 6 32 32 H 1.08993 * 109.47275 * 299.99963 * 9 8 7 33 33 H 1.08998 * 109.47143 * 60.00103 * 9 8 7 34 34 H 0.96997 * 120.00243 * 359.97438 * 10 9 8 35 35 H 0.97001 * 119.99861 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.05126 * 180.29707 * 19 3 2 37 37 H 1.07998 * 120.29174 * 180.02562 * 20 19 3 38 38 H 1.07999 * 120.24499 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1435 1.1896 0.0000 4 6 1.3919 2.4633 -0.0006 5 8 0.1815 2.4546 -0.1097 6 7 2.0488 3.6333 0.1255 7 6 1.3044 4.8951 0.1244 8 6 2.2802 6.0631 0.2798 9 6 1.5027 7.3809 0.2792 10 7 2.4372 8.4993 0.4274 11 6 1.9673 9.7853 0.4543 12 1 0.9077 9.9749 0.3659 13 6 2.8527 10.8450 0.5953 14 7 4.1439 10.6139 0.7025 15 14 2.2115 12.5992 0.6327 16 1 1.2752 12.7597 1.7742 17 1 3.3502 13.5392 0.7900 18 1 1.4993 12.8931 -0.6368 19 6 3.5063 1.2083 0.0061 20 6 4.2230 0.0009 0.0065 21 6 3.5447 -1.1791 0.0003 22 6 2.1323 -1.1697 -0.0054 23 8 1.5163 -2.2223 -0.0098 24 1 -0.3634 0.4384 -0.9295 25 1 -0.3634 -1.0241 0.0851 26 1 -0.3634 0.5857 0.8444 27 1 3.0144 3.6401 0.2170 28 1 0.7632 4.9969 -0.8163 29 1 0.5964 4.8999 0.9531 30 1 2.8218 5.9615 1.2203 31 1 2.9880 6.0582 -0.5493 32 1 0.9610 7.4827 -0.6611 33 1 0.7953 7.3857 1.1085 34 1 3.3888 8.3290 0.5072 35 1 4.7627 11.3545 0.8007 36 1 4.0342 2.1505 0.0109 37 1 5.3030 0.0085 0.0118 38 1 4.0825 -2.1157 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166333375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:11 Heat of formation + Delta-G solvation = -21.339706 kcal Electronic energy + Delta-G solvation = -20623.792018 eV Core-core repulsion = 17274.396496 eV Total energy + Delta-G solvation = -3349.395523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89865 -39.80750 -37.11497 -36.41096 -35.06741 -34.34835 -32.33951 -30.86105 -29.34044 -27.91117 -25.92047 -24.67023 -23.07778 -22.60963 -21.50716 -20.93612 -18.45234 -17.77152 -17.33978 -17.01830 -16.66612 -16.13176 -15.78815 -15.70566 -15.00574 -14.69490 -14.53634 -14.16941 -13.39265 -13.36531 -13.14305 -13.06764 -12.84261 -12.62967 -12.50403 -12.09125 -11.79356 -11.07919 -11.00622 -10.86621 -10.71880 -10.57142 -10.50586 -10.19243 -10.06181 -9.76917 -9.40402 -8.93795 -8.43393 -7.00668 -5.83169 -3.12574 0.00647 1.23876 2.04946 2.45806 2.76369 3.27216 3.40730 3.45162 3.46085 3.97894 4.18198 4.40656 4.52736 4.71722 4.74203 4.94778 5.13504 5.16104 5.20696 5.39739 5.45105 5.50865 5.52875 5.58842 5.72381 5.76426 5.89848 5.94427 6.05291 6.12425 6.21293 6.59340 6.67788 6.71943 7.03712 7.59214 7.63990 7.68297 8.35743 9.46987 10.02949 10.37348 11.39685 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.045695 B = 0.002518 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.606911 B =11116.694637 C =11693.293739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.476 5.476 3 C 0.121 3.879 4 C 0.551 3.449 5 O -0.522 6.522 6 N -0.706 5.706 7 C 0.122 3.878 8 C -0.139 4.139 9 C 0.157 3.843 10 N -0.734 5.734 11 C -0.243 4.243 12 H 0.071 0.929 13 C -0.013 4.013 14 N -0.934 5.934 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C -0.183 4.183 20 C -0.026 4.026 21 C -0.218 4.218 22 C 0.512 3.488 23 O -0.549 6.549 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.405 0.595 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -21.359 -1.335 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.188 5.188 3 C 0.010 3.990 4 C 0.335 3.665 5 O -0.399 6.399 6 N -0.358 5.358 7 C -0.001 4.001 8 C -0.177 4.177 9 C 0.029 3.971 10 N -0.378 5.378 11 C -0.374 4.374 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.583 5.583 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.208 4.208 20 C -0.048 4.048 21 C -0.240 4.240 22 C 0.313 3.687 23 O -0.431 6.431 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.241 0.759 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.176 -21.863 -1.414 21.940 hybrid contribution 0.646 1.080 0.084 1.261 sum -0.531 -20.783 -1.330 20.832 Atomic orbital electron populations 1.22341 0.75842 1.04550 1.05050 1.45426 1.10072 1.05119 1.58163 1.20185 0.92462 0.86857 0.99519 1.17831 0.87122 0.83267 0.78233 1.90850 1.13174 1.86999 1.48852 1.45936 1.11547 1.05687 1.72661 1.21516 0.94884 0.80650 1.03062 1.21972 0.98589 0.94277 1.02908 1.20506 0.92728 0.85704 0.98210 1.42317 1.05574 1.01250 1.88664 1.19189 0.92574 0.83179 1.42430 0.91127 1.24754 0.95363 0.98074 1.02738 1.69641 1.00906 1.30823 1.56917 0.86240 0.77425 0.84449 0.77912 1.21188 1.21637 1.21192 1.20954 0.91105 1.00372 1.08417 1.21430 1.01208 0.91332 0.90814 1.22414 0.92592 1.00430 1.08562 1.17351 0.89344 0.82533 0.79445 1.90943 1.69906 1.29064 1.53159 0.89508 0.88880 0.89321 0.75872 0.90668 0.90673 0.91041 0.91029 0.95988 0.95994 0.78274 0.93392 0.83110 0.83725 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 8.93 59.84 0.53 1.20 16 2 N -0.48 -5.19 3.02 -122.80 -0.37 -5.56 16 3 C 0.12 1.12 6.63 -82.33 -0.55 0.58 16 4 C 0.55 5.80 7.69 -12.31 -0.09 5.70 16 5 O -0.52 -6.93 13.22 5.33 0.07 -6.86 16 6 N -0.71 -6.38 5.50 -61.24 -0.34 -6.71 16 7 C 0.12 1.36 5.67 -4.05 -0.02 1.33 16 8 C -0.14 -1.83 5.44 -26.73 -0.15 -1.98 16 9 C 0.16 2.88 6.26 -4.04 -0.03 2.86 16 10 N -0.73 -17.81 5.60 -59.91 -0.34 -18.14 16 11 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 14 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 15 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.18 -1.19 9.49 -39.46 -0.37 -1.56 16 20 C -0.03 -0.16 10.08 -39.53 -0.40 -0.55 16 21 C -0.22 -1.82 10.00 -39.20 -0.39 -2.22 16 22 C 0.51 6.07 7.43 -15.16 -0.11 5.96 16 23 O -0.55 -8.33 16.40 4.95 0.08 -8.25 16 24 H 0.09 0.91 7.37 -51.93 -0.38 0.53 16 25 H 0.09 0.99 6.88 -51.93 -0.36 0.63 16 26 H 0.09 0.92 7.08 -51.93 -0.37 0.56 16 27 H 0.40 2.57 6.48 -40.82 -0.26 2.31 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 9.67 7.67 -40.82 -0.31 9.35 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.15 0.55 6.34 -52.49 -0.33 0.22 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -34.34 323.70 -7.08 -41.42 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.95 Total: 5.10 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.82 Total: 4.04 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.32 Total: -57.27 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.15 Total: -15.10 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.34 -7.08 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166333375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.078 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds