Wall clock time and date at job start Tue Mar 31 2020 01:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36953 * 119.70105 * 2 1 4 4 C 1.47889 * 119.75625 * 359.97438 * 3 2 1 5 5 O 1.21543 * 119.99893 * 354.07564 * 4 3 2 6 6 N 1.34768 * 119.99954 * 173.79938 * 4 3 2 7 7 C 1.46499 * 120.00278 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47645 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47419 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47196 * 180.02562 * 9 8 7 11 11 C 1.36943 * 120.00133 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99615 * 359.97438 * 11 10 9 13 13 C 1.38810 * 119.99994 * 179.97438 * 11 10 9 14 14 N 1.31614 * 120.00190 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99727 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47168 * 60.00140 * 15 13 11 17 17 H 1.48494 * 109.46973 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47038 * 300.00081 * 15 13 11 19 19 C 1.36290 * 120.48865 * 179.70223 * 3 2 1 20 20 C 1.40413 * 119.90660 * 0.27862 * 19 3 2 21 21 C 1.36108 * 119.41407 * 0.02562 * 20 19 3 22 22 C 1.34666 * 119.70609 * 180.26527 * 2 1 3 23 23 O 1.21961 * 119.95818 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47626 * 64.74667 * 1 2 3 25 25 H 1.09000 * 109.47408 * 184.74918 * 1 2 3 26 26 H 1.08998 * 109.47666 * 304.74732 * 1 2 3 27 27 H 0.96999 * 120.00545 * 359.97438 * 6 4 3 28 28 H 1.08997 * 109.47405 * 300.00962 * 7 6 4 29 29 H 1.09003 * 109.46599 * 59.99998 * 7 6 4 30 30 H 1.09006 * 109.47157 * 300.00507 * 8 7 6 31 31 H 1.09003 * 109.47319 * 60.00200 * 8 7 6 32 32 H 1.08993 * 109.47275 * 299.99963 * 9 8 7 33 33 H 1.08998 * 109.47143 * 60.00103 * 9 8 7 34 34 H 0.96997 * 120.00243 * 359.97438 * 10 9 8 35 35 H 0.97001 * 119.99861 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.05126 * 180.29707 * 19 3 2 37 37 H 1.07998 * 120.29174 * 180.02562 * 20 19 3 38 38 H 1.07999 * 120.24499 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1435 1.1896 0.0000 4 6 1.3919 2.4633 -0.0006 5 8 0.1815 2.4546 -0.1097 6 7 2.0488 3.6333 0.1255 7 6 1.3044 4.8951 0.1244 8 6 2.2802 6.0631 0.2798 9 6 1.5027 7.3809 0.2792 10 7 2.4372 8.4993 0.4274 11 6 1.9673 9.7853 0.4543 12 1 0.9077 9.9749 0.3659 13 6 2.8527 10.8450 0.5953 14 7 4.1439 10.6139 0.7025 15 14 2.2115 12.5992 0.6327 16 1 1.2752 12.7597 1.7742 17 1 3.3502 13.5392 0.7900 18 1 1.4993 12.8931 -0.6368 19 6 3.5063 1.2083 0.0061 20 6 4.2230 0.0009 0.0065 21 6 3.5447 -1.1791 0.0003 22 6 2.1323 -1.1697 -0.0054 23 8 1.5163 -2.2223 -0.0098 24 1 -0.3634 0.4384 -0.9295 25 1 -0.3634 -1.0241 0.0851 26 1 -0.3634 0.5857 0.8444 27 1 3.0144 3.6401 0.2170 28 1 0.7632 4.9969 -0.8163 29 1 0.5964 4.8999 0.9531 30 1 2.8218 5.9615 1.2203 31 1 2.9880 6.0582 -0.5493 32 1 0.9610 7.4827 -0.6611 33 1 0.7953 7.3857 1.1085 34 1 3.3888 8.3290 0.5072 35 1 4.7627 11.3545 0.8007 36 1 4.0342 2.1505 0.0109 37 1 5.3030 0.0085 0.0118 38 1 4.0825 -2.1157 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166333375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:11 Heat of formation + Delta-G solvation = -46.634755 kcal Electronic energy + Delta-G solvation = -20624.888894 eV Core-core repulsion = 17274.396496 eV Total energy + Delta-G solvation = -3350.492398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65958 -40.66204 -37.98213 -37.55177 -36.29577 -35.32813 -33.86429 -32.06680 -30.60424 -28.69495 -27.18603 -25.79062 -24.34630 -23.60664 -22.58190 -21.99456 -19.44227 -18.87469 -18.52247 -18.00512 -17.49308 -17.05199 -16.76229 -16.68036 -16.35923 -15.60208 -15.58004 -15.30328 -15.26368 -14.67290 -14.33036 -13.87187 -13.77797 -13.48409 -13.29939 -13.15653 -12.85426 -12.77400 -12.59487 -12.39474 -12.07584 -12.02619 -11.78248 -11.47262 -11.16345 -10.94787 -10.91493 -10.25733 -9.18294 -8.99192 -7.95154 -5.23544 -0.65867 0.57526 1.28804 1.49638 1.51738 1.57909 1.65990 1.96883 2.56717 2.57436 3.26906 3.39085 3.54007 3.75835 3.85724 4.11183 4.12442 4.20881 4.31435 4.35217 4.40912 4.46484 4.68957 4.75718 4.76976 4.83885 4.90542 4.94879 5.15178 5.19032 5.35268 5.35599 5.39714 5.51010 5.84648 6.27781 6.31249 6.79827 6.92276 7.34996 8.10632 8.33544 9.28043 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.045695 B = 0.002518 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.606911 B =11116.694637 C =11693.293739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.483 5.483 3 C 0.092 3.908 4 C 0.553 3.447 5 O -0.556 6.556 6 N -0.692 5.692 7 C 0.134 3.866 8 C -0.120 4.120 9 C 0.150 3.850 10 N -0.747 5.747 11 C -0.249 4.249 12 H 0.074 0.926 13 C -0.073 4.073 14 N -0.967 5.967 15 Si 0.971 3.029 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.279 1.279 19 C -0.153 4.153 20 C -0.005 4.005 21 C -0.229 4.229 22 C 0.495 3.505 23 O -0.601 6.601 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.420 0.580 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.188 0.812 37 H 0.191 0.809 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -21.085 -1.384 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.194 5.194 3 C -0.018 4.018 4 C 0.339 3.661 5 O -0.436 6.436 6 N -0.345 5.345 7 C 0.010 3.990 8 C -0.158 4.158 9 C 0.024 3.976 10 N -0.390 5.390 11 C -0.381 4.381 12 H 0.092 0.908 13 C -0.266 4.266 14 N -0.618 5.618 15 Si 0.800 3.200 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.205 1.205 19 C -0.178 4.178 20 C -0.026 4.026 21 C -0.251 4.251 22 C 0.299 3.701 23 O -0.487 6.487 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.260 0.740 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.209 0.791 35 H 0.061 0.939 36 H 0.205 0.795 37 H 0.208 0.792 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.421 -21.577 -1.465 21.631 hybrid contribution 0.180 0.990 0.093 1.011 sum 0.601 -20.587 -1.372 20.641 Atomic orbital electron populations 1.22193 0.76529 1.03798 1.04684 1.45425 1.09989 1.05694 1.58310 1.20210 0.93405 0.85579 1.02573 1.17996 0.86772 0.83850 0.77490 1.90839 1.14761 1.87462 1.50527 1.45678 1.12214 1.04528 1.72105 1.21224 0.94306 0.80789 1.02703 1.21722 0.98310 0.92128 1.03688 1.20689 0.92499 0.86574 0.97886 1.42528 1.06096 1.01823 1.88554 1.19594 0.92807 0.84779 1.40922 0.90809 1.25537 0.95683 1.01863 1.03510 1.69780 1.01892 1.31506 1.58614 0.85246 0.76719 0.79859 0.78148 1.20477 1.22054 1.20467 1.21536 0.89867 1.02326 1.04043 1.21908 1.03245 0.89703 0.87731 1.22564 0.90782 1.02395 1.09385 1.17972 0.90732 0.82045 0.79362 1.90905 1.71003 1.30639 1.56181 0.89920 0.89737 0.89590 0.74020 0.91112 0.91187 0.90309 0.90197 0.95988 0.96034 0.79116 0.93898 0.79482 0.79166 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 8.93 127.77 1.14 2.69 16 2 N -0.48 -10.50 3.02 -660.61 -1.99 -12.49 16 3 C 0.09 1.53 6.63 40.45 0.27 1.80 16 4 C 0.55 10.79 7.69 86.80 0.67 11.46 16 5 O -0.56 -14.68 13.22 -3.85 -0.05 -14.73 16 6 N -0.69 -10.61 5.50 -465.96 -2.56 -13.17 16 7 C 0.13 2.70 5.67 86.38 0.49 3.19 16 8 C -0.12 -2.89 5.44 30.59 0.17 -2.72 16 9 C 0.15 5.34 6.26 86.38 0.54 5.88 16 10 N -0.75 -35.69 5.60 -343.46 -1.92 -37.62 16 11 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 12 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 13 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 14 N -0.97 -57.11 13.06 21.65 0.28 -56.83 16 15 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.15 -1.34 9.49 22.35 0.21 -1.12 16 20 C 0.00 -0.03 10.08 22.30 0.22 0.19 16 21 C -0.23 -3.36 10.00 22.51 0.23 -3.13 16 22 C 0.50 11.77 7.43 85.00 0.63 12.40 16 23 O -0.60 -19.18 16.40 -5.19 -0.09 -19.26 16 24 H 0.08 1.86 7.37 -2.38 -0.02 1.85 16 25 H 0.08 1.99 6.88 -2.39 -0.02 1.97 16 26 H 0.09 1.92 7.08 -2.39 -0.02 1.90 16 27 H 0.42 3.61 6.48 -92.71 -0.60 3.01 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.38 18.77 7.67 -92.71 -0.71 18.06 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 36 H 0.19 0.24 6.34 -2.91 -0.02 0.22 16 37 H 0.19 -0.23 8.06 -2.91 -0.02 -0.26 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -76.30 323.70 1.35 -74.94 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.22 Total: 17.94 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.87 Total: 14.34 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.20 Total: -120.10 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.14 Total: -33.99 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -76.30 1.35 -74.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166333375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.309 kcal (2) G-P(sol) polarization free energy of solvation -76.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds