Wall clock time and date at job start Tue Mar 31 2020 00:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45198 * 109.47375 * 2 1 4 4 C 1.34642 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21388 * 120.00315 * 0.02562 * 4 3 2 6 6 C 1.48366 * 119.99545 * 180.02562 * 4 3 2 7 7 C 1.39109 * 120.50820 * 180.02562 * 6 4 3 8 8 C 1.39875 * 118.18084 * 179.97438 * 7 6 4 9 9 N 1.38510 * 120.51005 * 179.97438 * 8 7 6 10 10 C 1.46501 * 119.99908 * 5.00137 * 9 8 7 11 11 C 1.52999 * 109.46942 * 89.99933 * 10 9 8 12 12 C 1.46493 * 119.99724 * 184.99905 * 9 8 7 13 13 C 1.50706 * 109.47093 * 90.00017 * 12 9 8 14 14 H 1.07999 * 119.99726 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99842 * 179.97438 * 13 12 9 16 16 N 1.31521 * 119.99725 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00420 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46945 * 90.00173 * 17 15 13 19 19 H 1.48496 * 109.47370 * 210.00141 * 17 15 13 20 20 H 1.48502 * 109.47158 * 330.00663 * 17 15 13 21 21 N 1.32826 * 118.97341 * 0.02562 * 8 7 6 22 22 C 1.31848 * 120.92239 * 359.97438 * 21 8 7 23 23 N 1.31547 * 122.01511 * 0.02562 * 22 21 8 24 24 H 1.09006 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47581 * 299.99842 * 1 2 3 26 26 H 1.09000 * 109.46956 * 59.99886 * 1 2 3 27 27 H 1.09005 * 109.47167 * 239.99991 * 2 1 3 28 28 H 1.09005 * 109.47389 * 120.00289 * 2 1 3 29 29 H 1.08003 * 120.91056 * 0.25214 * 7 6 4 30 30 H 1.09003 * 109.46890 * 209.99804 * 10 9 8 31 31 H 1.09000 * 109.47415 * 329.99773 * 10 9 8 32 32 H 1.09001 * 109.47325 * 60.00244 * 11 10 9 33 33 H 1.08999 * 109.46896 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.47497 * 299.99397 * 11 10 9 35 35 H 1.08997 * 109.47135 * 209.99875 * 12 9 8 36 36 H 1.08999 * 109.47517 * 330.00070 * 12 9 8 37 37 H 0.97004 * 119.99943 * 180.02562 * 16 15 13 38 38 H 1.07998 * 118.99671 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5452 0.0005 5 8 4.0882 0.5826 0.0005 6 6 3.9159 2.9162 0.0011 7 6 5.2933 3.1107 0.0012 8 6 5.7750 4.4239 0.0012 9 7 7.1375 4.6732 0.0018 10 6 8.0855 3.5617 -0.1083 11 6 8.3935 3.2983 -1.5836 12 6 7.6305 6.0482 0.1123 13 6 7.8212 6.3981 1.5658 14 1 7.5979 5.6690 2.3305 15 6 8.2817 7.6488 1.9190 16 7 8.4486 7.9539 3.1874 17 14 8.6699 8.9092 0.5962 18 1 7.4548 9.7118 0.3054 19 1 9.7539 9.8066 1.0704 20 1 9.1095 8.2114 -0.6387 21 7 4.9056 5.4282 0.0017 22 6 3.6070 5.2001 0.0017 23 7 3.1131 3.9809 0.0017 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9722 2.2708 -0.0033 30 1 9.0069 3.8168 0.4153 31 1 7.6501 2.6673 0.3373 32 1 8.8290 4.1927 -2.0292 33 1 9.0992 2.4716 -1.6655 34 1 7.4722 3.0431 -2.1072 35 1 8.5829 6.1359 -0.4105 36 1 6.9070 6.7306 -0.3337 37 1 8.7723 8.8340 3.4360 38 1 2.9280 6.0399 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:28 Heat of formation + Delta-G solvation = -25.377721 kcal Electronic energy + Delta-G solvation = -21464.644547 eV Core-core repulsion = 18115.073923 eV Total energy + Delta-G solvation = -3349.570624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94647 -39.94969 -37.09216 -36.69804 -33.24758 -32.83624 -31.79074 -31.33458 -30.36266 -27.53339 -25.60745 -24.15495 -23.23984 -22.52496 -21.82872 -20.26640 -18.32732 -17.37963 -16.97796 -16.67055 -16.64269 -15.74139 -15.23580 -14.83298 -14.55685 -14.32667 -14.23207 -13.77486 -13.44387 -13.26922 -12.97489 -12.85624 -12.38975 -12.13274 -12.03833 -11.77075 -11.60693 -11.20676 -10.89052 -10.86383 -10.76208 -10.65643 -10.58811 -10.22892 -10.10920 -9.70660 -9.47754 -8.84481 -8.65331 -7.31819 -6.15592 -4.15593 0.71947 1.59548 2.42178 2.61782 3.23445 3.28845 3.31097 3.41241 4.17274 4.26492 4.32780 4.64019 4.74247 4.78995 4.91018 5.06450 5.13768 5.17507 5.25514 5.38457 5.44444 5.54076 5.58173 5.65948 5.77535 5.79425 5.92362 6.06167 6.24378 6.34131 6.41631 6.60647 6.85376 7.10904 7.49748 7.54961 7.75364 7.87707 8.40984 8.63395 8.87428 9.43324 10.97553 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.004139 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.368051 B = 6763.011474 C = 7286.585349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.530 3.470 5 O -0.499 6.499 6 C 0.162 3.838 7 C -0.236 4.236 8 C 0.452 3.548 9 N -0.561 5.561 10 C 0.113 3.887 11 C -0.170 4.170 12 C 0.220 3.780 13 C -0.531 4.531 14 H 0.073 0.927 15 C 0.075 3.925 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.545 5.545 22 C 0.337 3.663 23 N -0.541 5.541 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 -12.686 -9.013 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.246 6.246 4 C 0.373 3.627 5 O -0.385 6.385 6 C 0.020 3.980 7 C -0.267 4.267 8 C 0.205 3.795 9 N -0.268 5.268 10 C -0.011 4.011 11 C -0.228 4.228 12 C 0.100 3.900 13 C -0.570 4.570 14 H 0.092 0.908 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.269 5.269 22 C 0.046 3.954 23 N -0.264 5.264 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.168 0.832 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.633 -12.100 -8.884 17.836 hybrid contribution 0.846 -0.006 -0.402 0.937 sum -8.787 -12.106 -9.286 17.607 Atomic orbital electron populations 1.21788 0.92434 1.02780 1.03832 1.23102 0.95623 0.80243 1.02612 1.86692 1.22969 1.31762 1.83179 1.20861 0.80912 0.88473 0.72486 1.90819 1.60775 1.41446 1.45473 1.19799 0.89654 0.90723 0.97852 1.22102 0.95573 0.98184 1.10838 1.18456 0.86770 0.87747 0.86508 1.46920 0.99907 1.09346 1.70609 1.21555 0.93791 0.89208 0.96528 1.22221 1.01650 1.01976 0.96970 1.19810 0.94680 0.77227 0.98320 1.21293 1.44963 1.00075 0.90659 0.90840 1.24834 0.94809 0.97864 0.95303 1.69898 1.45936 1.21666 1.15846 0.86851 0.78639 0.81958 0.82224 1.19742 1.21105 1.19124 1.68031 1.03624 1.35125 1.20096 1.24666 0.88936 0.92983 0.88766 1.68350 1.39478 0.99162 1.19423 0.90307 0.91277 0.91350 0.91169 0.91105 0.83164 0.88996 0.90893 0.92118 0.91569 0.92814 0.95108 0.93632 0.92466 0.78575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.15 0.38 -0.74 16 2 C 0.06 0.59 6.19 37.15 0.23 0.82 16 3 O -0.33 -4.66 10.07 -40.34 -0.41 -5.07 16 4 C 0.53 8.41 7.97 34.90 0.28 8.69 16 5 O -0.50 -8.30 16.20 -19.18 -0.31 -8.61 16 6 C 0.16 2.77 6.78 -82.72 -0.56 2.20 16 7 C -0.24 -4.10 8.87 -38.65 -0.34 -4.44 16 8 C 0.45 8.84 7.39 -154.85 -1.14 7.69 16 9 N -0.56 -11.10 2.56 -175.01 -0.45 -11.55 16 10 C 0.11 1.77 5.99 -4.04 -0.02 1.74 16 11 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 12 C 0.22 5.04 4.30 -5.19 -0.02 5.02 16 13 C -0.53 -14.55 9.94 -34.44 -0.34 -14.89 16 14 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 15 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 17 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 21 N -0.54 -10.90 9.21 -13.83 -0.13 -11.03 16 22 C 0.34 5.71 12.27 -92.32 -1.13 4.58 16 23 N -0.54 -9.28 10.25 -11.23 -0.12 -9.39 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.15 2.37 5.84 -52.48 -0.31 2.06 16 30 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 31 H 0.07 1.04 6.05 -51.93 -0.31 0.72 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.05 1.08 6.76 -51.93 -0.35 0.73 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 38 H 0.20 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -32.23 329.58 -7.89 -40.12 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.16 Total: -0.23 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -2.40 Total: 10.85 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.08 Total: -58.05 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.72 Total: -13.68 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.23 -7.89 -40.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.738 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds