Wall clock time and date at job start Tue Mar 31 2020 00:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45198 * 109.47375 * 2 1 4 4 C 1.34642 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21388 * 120.00315 * 0.02562 * 4 3 2 6 6 C 1.48366 * 119.99545 * 180.02562 * 4 3 2 7 7 C 1.39109 * 120.50820 * 180.02562 * 6 4 3 8 8 C 1.39875 * 118.18084 * 179.97438 * 7 6 4 9 9 N 1.38510 * 120.51005 * 179.97438 * 8 7 6 10 10 C 1.46501 * 119.99908 * 5.00137 * 9 8 7 11 11 C 1.52999 * 109.46942 * 89.99933 * 10 9 8 12 12 C 1.46493 * 119.99724 * 184.99905 * 9 8 7 13 13 C 1.50706 * 109.47093 * 90.00017 * 12 9 8 14 14 H 1.07999 * 119.99726 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99842 * 179.97438 * 13 12 9 16 16 N 1.31521 * 119.99725 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00420 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46945 * 90.00173 * 17 15 13 19 19 H 1.48496 * 109.47370 * 210.00141 * 17 15 13 20 20 H 1.48502 * 109.47158 * 330.00663 * 17 15 13 21 21 N 1.32826 * 118.97341 * 0.02562 * 8 7 6 22 22 C 1.31848 * 120.92239 * 359.97438 * 21 8 7 23 23 N 1.31547 * 122.01511 * 0.02562 * 22 21 8 24 24 H 1.09006 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47581 * 299.99842 * 1 2 3 26 26 H 1.09000 * 109.46956 * 59.99886 * 1 2 3 27 27 H 1.09005 * 109.47167 * 239.99991 * 2 1 3 28 28 H 1.09005 * 109.47389 * 120.00289 * 2 1 3 29 29 H 1.08003 * 120.91056 * 0.25214 * 7 6 4 30 30 H 1.09003 * 109.46890 * 209.99804 * 10 9 8 31 31 H 1.09000 * 109.47415 * 329.99773 * 10 9 8 32 32 H 1.09001 * 109.47325 * 60.00244 * 11 10 9 33 33 H 1.08999 * 109.46896 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.47497 * 299.99397 * 11 10 9 35 35 H 1.08997 * 109.47135 * 209.99875 * 12 9 8 36 36 H 1.08999 * 109.47517 * 330.00070 * 12 9 8 37 37 H 0.97004 * 119.99943 * 180.02562 * 16 15 13 38 38 H 1.07998 * 118.99671 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5452 0.0005 5 8 4.0882 0.5826 0.0005 6 6 3.9159 2.9162 0.0011 7 6 5.2933 3.1107 0.0012 8 6 5.7750 4.4239 0.0012 9 7 7.1375 4.6732 0.0018 10 6 8.0855 3.5617 -0.1083 11 6 8.3935 3.2983 -1.5836 12 6 7.6305 6.0482 0.1123 13 6 7.8212 6.3981 1.5658 14 1 7.5979 5.6690 2.3305 15 6 8.2817 7.6488 1.9190 16 7 8.4486 7.9539 3.1874 17 14 8.6699 8.9092 0.5962 18 1 7.4548 9.7118 0.3054 19 1 9.7539 9.8066 1.0704 20 1 9.1095 8.2114 -0.6387 21 7 4.9056 5.4282 0.0017 22 6 3.6070 5.2001 0.0017 23 7 3.1131 3.9809 0.0017 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9722 2.2708 -0.0033 30 1 9.0069 3.8168 0.4153 31 1 7.6501 2.6673 0.3373 32 1 8.8290 4.1927 -2.0292 33 1 9.0992 2.4716 -1.6655 34 1 7.4722 3.0431 -2.1072 35 1 8.5829 6.1359 -0.4105 36 1 6.9070 6.7306 -0.3337 37 1 8.7723 8.8340 3.4360 38 1 2.9280 6.0399 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:27 Heat of formation + Delta-G solvation = -43.888154 kcal Electronic energy + Delta-G solvation = -21465.447220 eV Core-core repulsion = 18115.073923 eV Total energy + Delta-G solvation = -3350.373297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26918 -41.19342 -38.53856 -37.83726 -34.88833 -34.59721 -32.75689 -32.51139 -31.93140 -29.18660 -26.96933 -25.45092 -24.56462 -23.86197 -23.03325 -21.64449 -19.60266 -19.08266 -18.76220 -17.91680 -17.74251 -17.09407 -16.56065 -16.38033 -16.18574 -15.62531 -15.52520 -15.01867 -14.64949 -14.52450 -14.42334 -14.06381 -13.61727 -13.60336 -13.15648 -12.98460 -12.70282 -12.52483 -12.43147 -12.30783 -12.08723 -12.07918 -11.83888 -11.69794 -11.57680 -11.54424 -11.02531 -10.79721 -10.26635 -8.83075 -8.30912 -6.36494 -0.62193 0.19800 1.28843 1.32746 1.37909 1.40545 1.48858 1.98611 2.33865 2.87983 2.97286 3.04145 3.34652 3.56202 3.84796 4.02049 4.03648 4.06580 4.24762 4.28897 4.33240 4.36294 4.60434 4.72067 4.78471 4.86033 4.92668 4.94436 4.99106 5.05115 5.25114 5.30644 5.33592 5.47004 5.64776 6.01619 6.30199 6.38327 6.54801 6.65435 7.22367 7.28793 8.85972 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.004139 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.368051 B = 6763.011474 C = 7286.585349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.337 6.337 4 C 0.535 3.465 5 O -0.509 6.509 6 C 0.156 3.844 7 C -0.233 4.233 8 C 0.436 3.564 9 N -0.573 5.573 10 C 0.106 3.894 11 C -0.158 4.158 12 C 0.233 3.767 13 C -0.532 4.532 14 H 0.024 0.976 15 C 0.014 3.986 16 N -0.947 5.947 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.240 1.240 21 N -0.578 5.578 22 C 0.336 3.664 23 N -0.541 5.541 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.165 0.835 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -13.454 -11.042 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.252 6.252 4 C 0.377 3.623 5 O -0.397 6.397 6 C 0.014 3.986 7 C -0.263 4.263 8 C 0.190 3.810 9 N -0.281 5.281 10 C -0.016 4.016 11 C -0.217 4.217 12 C 0.111 3.889 13 C -0.570 4.570 14 H 0.042 0.958 15 C -0.184 4.184 16 N -0.587 5.587 17 Si 0.771 3.229 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.163 1.163 21 N -0.303 5.303 22 C 0.047 3.953 23 N -0.263 5.263 24 H 0.124 0.876 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.182 0.818 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.337 -12.918 -10.932 19.830 hybrid contribution 0.921 0.098 0.318 0.979 sum -9.416 -12.820 -10.614 19.122 Atomic orbital electron populations 1.21827 0.90177 1.04542 1.03697 1.23507 0.97361 0.78388 1.03233 1.86681 1.21690 1.34309 1.82562 1.20610 0.81586 0.87695 0.72406 1.90808 1.61201 1.41537 1.46148 1.20114 0.89789 0.91564 0.97177 1.22155 0.96031 0.97653 1.10508 1.18712 0.86722 0.88641 0.86949 1.46935 1.00688 1.09019 1.71463 1.21794 0.92734 0.88402 0.98660 1.22132 1.02260 1.02792 0.94468 1.19437 0.95129 0.79239 0.95044 1.21498 1.44239 0.99139 0.92163 0.95771 1.25802 0.94604 1.00280 0.97698 1.70062 1.47676 1.22506 1.18486 0.85710 0.78486 0.78876 0.79832 1.19340 1.20806 1.16319 1.68035 1.04910 1.36051 1.21315 1.25322 0.88531 0.93918 0.87558 1.68437 1.39419 0.99278 1.19186 0.87555 0.91568 0.91302 0.90354 0.90729 0.81799 0.89843 0.89689 0.92650 0.88687 0.92873 0.93666 0.94163 0.92345 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.05 0.89 6.19 71.98 0.45 1.34 16 3 O -0.34 -9.04 10.07 -55.50 -0.56 -9.60 16 4 C 0.53 16.35 7.97 70.52 0.56 16.91 16 5 O -0.51 -16.30 16.20 20.20 0.33 -15.98 16 6 C 0.16 5.20 6.78 41.82 0.28 5.48 16 7 C -0.23 -7.95 8.87 22.88 0.20 -7.75 16 8 C 0.44 16.97 7.39 133.28 0.99 17.96 16 9 N -0.57 -22.58 2.56 -707.61 -1.81 -24.39 16 10 C 0.11 3.25 5.99 86.38 0.52 3.77 16 11 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 12 C 0.23 10.63 4.30 85.64 0.37 11.00 16 13 C -0.53 -29.86 9.94 25.60 0.25 -29.61 16 14 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 15 C 0.01 0.80 5.47 84.65 0.46 1.27 16 16 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 17 Si 0.95 42.46 27.47 68.60 1.88 44.34 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 21 N -0.58 -23.02 9.21 -197.65 -1.82 -24.84 16 22 C 0.34 11.10 12.27 180.94 2.22 13.32 16 23 N -0.54 -17.99 10.25 -189.44 -1.94 -19.93 16 24 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.16 5.00 5.84 -2.91 -0.02 4.98 16 30 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 31 H 0.08 2.35 6.05 -2.39 -0.01 2.34 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.93 7.13 -2.39 -0.02 1.92 16 36 H 0.04 1.89 6.76 -2.39 -0.02 1.87 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.23 5.66 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -71.07 329.58 5.17 -65.90 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.01 Total: 13.12 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 7.78 Total: 29.55 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.27 Total: -127.33 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.23 Total: -25.58 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -71.07 5.17 -65.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.010 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds