Wall clock time and date at job start Tue Mar 31 2020 00:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47171 * 2 1 4 4 C 1.46897 * 111.00178 * 160.05053 * 3 2 1 5 5 C 1.50699 * 109.47121 * 288.43463 * 4 3 2 6 6 H 1.07995 * 120.00144 * 3.43029 * 5 4 3 7 7 C 1.37885 * 119.99912 * 183.42453 * 5 4 3 8 8 N 1.31516 * 119.99805 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00028 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46888 * 89.99847 * 9 7 5 11 11 H 1.48497 * 109.46858 * 210.00097 * 9 7 5 12 12 H 1.48496 * 109.47131 * 329.99980 * 9 7 5 13 13 C 1.39009 * 110.99908 * 284.00413 * 3 2 1 14 14 N 1.32434 * 119.70295 * 302.59487 * 13 3 2 15 15 C 1.31939 * 121.61983 * 180.02562 * 14 13 3 16 16 C 1.38067 * 120.85606 * 359.97438 * 15 14 13 17 17 N 1.47998 * 120.33655 * 179.97438 * 16 15 14 18 18 O 1.21799 * 120.00033 * 36.64347 * 17 16 15 19 19 O 1.21797 * 120.00295 * 216.64046 * 17 16 15 20 20 C 1.38846 * 119.32626 * 359.72733 * 16 15 14 21 21 C 1.50701 * 120.74519 * 180.27890 * 20 16 15 22 22 C 1.38336 * 118.50345 * 0.53455 * 20 16 15 23 23 C 1.50707 * 120.44878 * 179.73782 * 22 20 16 24 24 H 1.08999 * 109.46991 * 185.16982 * 1 2 3 25 25 H 1.09001 * 109.47151 * 305.17197 * 1 2 3 26 26 H 1.09002 * 109.46622 * 65.17141 * 1 2 3 27 27 H 1.08999 * 109.47301 * 239.99409 * 2 1 3 28 28 H 1.09004 * 109.46834 * 119.99649 * 2 1 3 29 29 H 1.09006 * 109.46840 * 48.43362 * 4 3 2 30 30 H 1.08998 * 109.47674 * 168.43578 * 4 3 2 31 31 H 0.96996 * 120.00039 * 180.02562 * 8 7 5 32 32 H 1.08002 * 119.57065 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.46403 * 267.91514 * 21 20 16 34 34 H 1.08995 * 109.47202 * 27.91708 * 21 20 16 35 35 H 1.09002 * 109.47109 * 147.92201 * 21 20 16 36 36 H 1.09001 * 109.47131 * 275.27225 * 23 22 20 37 37 H 1.09000 * 109.46987 * 155.27265 * 23 22 20 38 38 H 1.09000 * 109.47038 * 35.27698 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4105 1.4517 0.4679 5 6 3.4555 1.1819 1.9499 6 1 2.5499 0.9264 2.4799 7 6 4.6528 1.2610 2.6290 8 7 4.6921 1.0250 3.9223 9 14 6.2192 1.7033 1.7123 10 1 6.4001 3.1771 1.7240 11 1 7.3800 1.0567 2.3752 12 1 6.1224 1.2276 0.3089 13 6 1.8896 1.9593 -1.2592 14 7 2.4713 1.3895 -2.3036 15 6 2.3730 1.9023 -3.5153 16 6 1.6542 3.0598 -3.7382 17 7 1.5520 3.6254 -5.1020 18 8 1.4677 2.8834 -6.0642 19 8 1.5520 4.8328 -5.2622 20 6 1.0238 3.6851 -2.6706 21 6 0.2257 4.9463 -2.8786 22 6 1.1494 3.1271 -1.4111 23 6 0.4884 3.7726 -0.2204 24 1 -0.3633 -1.0235 0.0926 25 1 -0.3633 0.5920 0.8400 26 1 -0.3633 0.4315 -0.9327 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.0063 0.7039 -0.0558 30 1 3.8144 2.4439 0.2669 31 1 5.5343 1.0810 4.4001 32 1 2.8606 1.4098 -4.3436 33 1 0.8686 5.8127 -2.7231 34 1 -0.1681 4.9637 -3.8948 35 1 -0.6004 4.9748 -2.1681 36 1 1.1359 4.5553 0.1746 37 1 0.3146 3.0215 0.5502 38 1 -0.4635 4.2076 -0.5249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:22 Heat of formation + Delta-G solvation = 40.887840 kcal Electronic energy + Delta-G solvation = -22253.376971 eV Core-core repulsion = 18906.679838 eV Total energy + Delta-G solvation = -3346.697134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35174 -40.82477 -37.24299 -36.65169 -34.82046 -32.93712 -32.23260 -30.47103 -29.09558 -27.97901 -26.62831 -25.70440 -22.96111 -22.27996 -22.06629 -20.34210 -18.91641 -18.70930 -17.99577 -17.32629 -16.63948 -16.15032 -15.56267 -14.56516 -14.39899 -14.07983 -13.68080 -13.60410 -13.19316 -13.02345 -12.90506 -12.73969 -12.56904 -12.49945 -11.95854 -11.61430 -11.59021 -11.39950 -11.26208 -11.06787 -10.94891 -10.71641 -10.65380 -10.23970 -9.92733 -9.88701 -9.52354 -9.06892 -8.74826 -8.11537 -6.22702 -4.22296 -0.12795 0.80685 1.07948 1.31791 3.16405 3.23476 3.25490 3.28070 3.77664 4.07051 4.13709 4.26813 4.38175 4.67752 4.90086 5.09593 5.13144 5.22802 5.25424 5.42244 5.50429 5.63277 5.68193 5.69075 5.79423 5.86159 6.02152 6.11160 6.27063 6.32279 6.43833 6.49579 6.57342 6.70622 7.28052 7.38438 7.55653 7.58629 7.69424 8.39378 8.83735 9.36885 10.89519 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.005270 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.414882 B = 5311.982228 C = 5678.997668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.479 5.479 4 C 0.173 3.827 5 C -0.515 4.515 6 H 0.086 0.914 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.868 3.132 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.364 3.636 14 N -0.500 5.500 15 C 0.178 3.822 16 C -0.115 4.115 17 N 0.037 4.963 18 O -0.163 6.163 19 O -0.156 6.156 20 C 0.013 3.987 21 C -0.125 4.125 22 C -0.109 4.109 23 C -0.104 4.104 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.008 0.992 30 H 0.022 0.978 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 4.383 -11.800 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.202 5.202 4 C 0.049 3.951 5 C -0.553 4.553 6 H 0.104 0.896 7 C -0.127 4.127 8 N -0.530 5.530 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.136 3.864 14 N -0.213 5.213 15 C 0.016 3.984 16 C -0.201 4.201 17 N 0.557 4.443 18 O -0.378 6.378 19 O -0.373 6.373 20 C 0.005 3.995 21 C -0.181 4.181 22 C -0.114 4.114 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.026 0.974 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.525 3.570 -10.461 13.959 hybrid contribution 1.116 0.615 -1.503 1.971 sum -7.409 4.185 -11.964 14.682 Atomic orbital electron populations 1.21799 0.95781 1.01390 1.01322 1.22178 0.94795 0.87281 1.03023 1.60498 1.25748 1.20004 1.13992 1.20258 0.80895 0.96392 0.97548 1.20869 0.96389 1.48121 0.89963 0.89617 1.24807 0.98531 0.94672 0.94670 1.69861 1.26826 1.48882 1.07404 0.86964 0.83752 0.79175 0.80589 1.20055 1.20781 1.19198 1.20743 0.86266 0.89618 0.89724 1.68368 1.20970 1.33112 0.98817 1.22466 0.91902 0.88373 0.95618 1.22001 1.13481 1.01831 0.82775 1.43393 0.97391 1.00711 1.02767 1.94542 1.53139 1.58184 1.31968 1.94512 1.53045 0.97554 1.92160 1.19971 0.93557 0.95711 0.90305 1.21070 0.99823 0.93479 1.03753 1.20586 1.00068 0.96090 0.94616 1.20743 0.98881 1.01671 0.94755 0.92357 0.91528 0.94364 0.93730 0.88073 0.97385 0.95991 0.92348 0.81124 0.88394 0.90562 0.89478 0.90203 0.88374 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.96 37.16 0.37 -1.70 16 2 C 0.05 0.94 5.49 -3.82 -0.02 0.92 16 3 N -0.48 -9.12 3.24 -174.56 -0.57 -9.69 16 4 C 0.17 3.94 3.63 -4.98 -0.02 3.92 16 5 C -0.52 -13.53 8.94 -34.44 -0.31 -13.84 16 6 H 0.09 2.41 7.81 -52.49 -0.41 2.00 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.85 13.96 55.43 0.77 -25.07 16 9 Si 0.87 20.67 27.40 -169.99 -4.66 16.02 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.27 6.64 56.52 0.38 -5.89 16 13 C 0.36 6.25 4.66 -155.00 -0.72 5.53 16 14 N -0.50 -8.52 9.41 -12.44 -0.12 -8.64 16 15 C 0.18 2.61 10.81 -17.57 -0.19 2.42 16 16 C -0.12 -1.64 6.51 -79.80 -0.52 -2.16 16 17 N 0.04 0.54 4.16 34.04 0.14 0.68 16 18 O -0.16 -2.42 18.94 -29.46 -0.56 -2.98 16 19 O -0.16 -2.26 16.71 -29.46 -0.49 -2.75 16 20 C 0.01 0.17 5.90 -104.36 -0.62 -0.44 16 21 C -0.13 -1.27 8.58 36.01 0.31 -0.96 16 22 C -0.11 -1.59 5.92 -104.27 -0.62 -2.20 16 23 C -0.10 -1.29 9.38 36.01 0.34 -0.95 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.53 7.85 -51.93 -0.41 0.12 16 27 H 0.04 0.78 7.35 -51.93 -0.38 0.40 16 28 H 0.10 1.95 6.95 -51.93 -0.36 1.59 16 29 H 0.01 0.20 7.36 -51.93 -0.38 -0.18 16 30 H 0.02 0.52 7.22 -51.93 -0.37 0.14 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.17 2.09 8.00 -52.49 -0.42 1.68 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.80 6.49 -51.93 -0.34 0.46 16 35 H 0.09 0.71 6.26 -51.93 -0.32 0.38 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.38 7.31 -51.93 -0.38 1.00 16 38 H 0.07 0.63 6.32 -51.93 -0.33 0.30 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -28.91 319.71 -7.71 -36.62 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.96 Total: -1.53 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.09 Total: -7.48 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.23 Total: -42.71 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -1.05 Total: -5.73 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.66 Total: 16.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.91 -7.71 -36.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.507 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds