Wall clock time and date at job start Tue Mar 31 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47171 * 2 1 4 4 C 1.46897 * 111.00178 * 160.05053 * 3 2 1 5 5 C 1.50699 * 109.47121 * 288.43463 * 4 3 2 6 6 H 1.07995 * 120.00144 * 3.43029 * 5 4 3 7 7 C 1.37885 * 119.99912 * 183.42453 * 5 4 3 8 8 N 1.31516 * 119.99805 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00028 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46888 * 89.99847 * 9 7 5 11 11 H 1.48497 * 109.46858 * 210.00097 * 9 7 5 12 12 H 1.48496 * 109.47131 * 329.99980 * 9 7 5 13 13 C 1.39009 * 110.99908 * 284.00413 * 3 2 1 14 14 N 1.32434 * 119.70295 * 302.59487 * 13 3 2 15 15 C 1.31939 * 121.61983 * 180.02562 * 14 13 3 16 16 C 1.38067 * 120.85606 * 359.97438 * 15 14 13 17 17 N 1.47998 * 120.33655 * 179.97438 * 16 15 14 18 18 O 1.21799 * 120.00033 * 36.64347 * 17 16 15 19 19 O 1.21797 * 120.00295 * 216.64046 * 17 16 15 20 20 C 1.38846 * 119.32626 * 359.72733 * 16 15 14 21 21 C 1.50701 * 120.74519 * 180.27890 * 20 16 15 22 22 C 1.38336 * 118.50345 * 0.53455 * 20 16 15 23 23 C 1.50707 * 120.44878 * 179.73782 * 22 20 16 24 24 H 1.08999 * 109.46991 * 185.16982 * 1 2 3 25 25 H 1.09001 * 109.47151 * 305.17197 * 1 2 3 26 26 H 1.09002 * 109.46622 * 65.17141 * 1 2 3 27 27 H 1.08999 * 109.47301 * 239.99409 * 2 1 3 28 28 H 1.09004 * 109.46834 * 119.99649 * 2 1 3 29 29 H 1.09006 * 109.46840 * 48.43362 * 4 3 2 30 30 H 1.08998 * 109.47674 * 168.43578 * 4 3 2 31 31 H 0.96996 * 120.00039 * 180.02562 * 8 7 5 32 32 H 1.08002 * 119.57065 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.46403 * 267.91514 * 21 20 16 34 34 H 1.08995 * 109.47202 * 27.91708 * 21 20 16 35 35 H 1.09002 * 109.47109 * 147.92201 * 21 20 16 36 36 H 1.09001 * 109.47131 * 275.27225 * 23 22 20 37 37 H 1.09000 * 109.46987 * 155.27265 * 23 22 20 38 38 H 1.09000 * 109.47038 * 35.27698 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4105 1.4517 0.4679 5 6 3.4555 1.1819 1.9499 6 1 2.5499 0.9264 2.4799 7 6 4.6528 1.2610 2.6290 8 7 4.6921 1.0250 3.9223 9 14 6.2192 1.7033 1.7123 10 1 6.4001 3.1771 1.7240 11 1 7.3800 1.0567 2.3752 12 1 6.1224 1.2276 0.3089 13 6 1.8896 1.9593 -1.2592 14 7 2.4713 1.3895 -2.3036 15 6 2.3730 1.9023 -3.5153 16 6 1.6542 3.0598 -3.7382 17 7 1.5520 3.6254 -5.1020 18 8 1.4677 2.8834 -6.0642 19 8 1.5520 4.8328 -5.2622 20 6 1.0238 3.6851 -2.6706 21 6 0.2257 4.9463 -2.8786 22 6 1.1494 3.1271 -1.4111 23 6 0.4884 3.7726 -0.2204 24 1 -0.3633 -1.0235 0.0926 25 1 -0.3633 0.5920 0.8400 26 1 -0.3633 0.4315 -0.9327 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.0063 0.7039 -0.0558 30 1 3.8144 2.4439 0.2669 31 1 5.5343 1.0810 4.4001 32 1 2.8606 1.4098 -4.3436 33 1 0.8686 5.8127 -2.7231 34 1 -0.1681 4.9637 -3.8948 35 1 -0.6004 4.9748 -2.1681 36 1 1.1359 4.5553 0.1746 37 1 0.3146 3.0215 0.5502 38 1 -0.4635 4.2076 -0.5249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:21 Heat of formation + Delta-G solvation = 25.034204 kcal Electronic energy + Delta-G solvation = -22254.064437 eV Core-core repulsion = 18906.679838 eV Total energy + Delta-G solvation = -3347.384599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.49179 -42.03433 -38.64123 -37.79723 -35.92391 -34.88345 -33.49559 -31.99042 -30.07804 -29.54260 -27.76220 -26.97971 -24.20881 -24.04596 -23.18097 -21.70039 -20.05774 -19.86644 -19.28281 -19.02702 -17.83095 -17.64323 -17.09223 -16.11432 -15.65290 -15.45932 -15.04439 -14.71889 -14.52554 -14.42381 -14.17167 -14.04043 -13.76417 -13.50920 -13.12378 -13.01259 -12.87212 -12.73200 -12.68765 -12.40669 -12.37871 -12.16782 -12.10461 -11.90511 -11.64239 -11.10893 -11.06209 -10.84530 -10.22779 -9.65064 -8.34289 -6.37600 -1.29488 -0.29633 -0.09262 0.17106 1.27233 1.30947 1.39015 2.04932 2.26652 2.48126 2.98946 2.99997 3.04442 3.26538 3.52405 3.84197 4.06707 4.14250 4.24500 4.31323 4.47384 4.49995 4.61329 4.63943 4.69360 4.76247 4.82713 4.89682 4.93159 5.03200 5.07779 5.16915 5.27845 5.38346 5.46120 5.73946 6.06862 6.35346 6.42856 6.43732 6.68539 7.24981 8.81200 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.005270 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.414882 B = 5311.982228 C = 5678.997668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.480 5.480 4 C 0.187 3.813 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.935 5.935 9 Si 0.929 3.071 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.263 1.263 13 C 0.336 3.664 14 N -0.523 5.523 15 C 0.175 3.825 16 C -0.117 4.117 17 N 0.039 4.961 18 O -0.175 6.175 19 O -0.146 6.146 20 C 0.024 3.976 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.102 4.102 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.074 0.926 29 H -0.005 1.005 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.190 0.810 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 5.950 -13.588 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 N -0.203 5.203 4 C 0.062 3.938 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.175 4.175 8 N -0.575 5.575 9 Si 0.754 3.246 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.187 1.187 13 C 0.110 3.890 14 N -0.236 5.236 15 C 0.014 3.986 16 C -0.202 4.202 17 N 0.559 4.441 18 O -0.387 6.387 19 O -0.366 6.366 20 C 0.015 3.985 21 C -0.181 4.181 22 C -0.112 4.112 23 C -0.159 4.159 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.013 0.987 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.207 0.793 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.318 5.111 -12.278 16.239 hybrid contribution 1.258 0.161 -1.013 1.623 sum -8.060 5.272 -13.291 16.414 Atomic orbital electron populations 1.21686 0.92968 1.02715 1.01595 1.22165 0.97080 0.86557 1.01438 1.60348 1.23215 1.20750 1.15975 1.19871 0.83375 0.95446 0.95082 1.21030 0.95219 1.46986 0.91733 0.92721 1.25569 1.01790 0.94828 0.95333 1.69986 1.27799 1.50716 1.09038 0.85986 0.79905 0.79305 0.79425 1.19057 1.20308 1.18704 1.20738 0.88347 0.90983 0.88924 1.68252 1.21819 1.33969 0.99572 1.22702 0.92008 0.88683 0.95257 1.22109 1.13335 1.01818 0.82980 1.43386 0.97311 1.00675 1.02730 1.94555 1.53849 1.58248 1.32069 1.94507 1.52417 0.97523 1.92153 1.20312 0.92667 0.96284 0.89224 1.21226 1.00350 0.91998 1.04497 1.20735 0.99538 0.95064 0.95835 1.20792 1.00491 1.01100 0.93477 0.90431 0.91669 0.93596 0.94052 0.90780 0.98729 0.96279 0.92181 0.79323 0.86984 0.90610 0.86916 0.89981 0.90290 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.96 71.98 0.72 -2.94 16 2 C 0.05 1.92 5.49 86.30 0.47 2.40 16 3 N -0.48 -18.42 3.24 -706.19 -2.29 -20.71 16 4 C 0.19 8.67 3.63 85.56 0.31 8.98 16 5 C -0.51 -27.65 8.94 25.60 0.23 -27.43 16 6 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 7 C 0.02 1.33 5.47 84.66 0.46 1.79 16 8 N -0.94 -55.56 13.96 21.45 0.30 -55.26 16 9 Si 0.93 42.90 27.40 68.60 1.88 44.78 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -11.82 6.64 99.48 0.66 -11.16 16 13 C 0.34 11.29 4.66 133.04 0.62 11.91 16 14 N -0.52 -17.42 9.41 -193.26 -1.82 -19.24 16 15 C 0.18 4.86 10.81 84.64 0.91 5.78 16 16 C -0.12 -3.06 6.51 36.48 0.24 -2.82 16 17 N 0.04 1.03 4.16 -46.23 -0.19 0.84 16 18 O -0.17 -4.85 18.94 18.89 0.36 -4.49 16 19 O -0.15 -3.81 16.71 18.89 0.32 -3.49 16 20 C 0.02 0.56 5.90 -19.70 -0.12 0.44 16 21 C -0.12 -2.03 8.58 71.24 0.61 -1.42 16 22 C -0.11 -2.90 5.92 -19.63 -0.12 -3.02 16 23 C -0.10 -2.30 9.38 71.24 0.67 -1.63 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.20 7.85 -2.39 -0.02 1.18 16 27 H 0.04 1.47 7.35 -2.39 -0.02 1.46 16 28 H 0.07 3.00 6.95 -2.39 -0.02 2.98 16 29 H -0.01 -0.25 7.36 -2.38 -0.02 -0.26 16 30 H 0.02 0.89 7.22 -2.39 -0.02 0.88 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.19 4.35 8.00 -2.91 -0.02 4.32 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.29 6.49 -2.39 -0.02 1.28 16 35 H 0.11 1.28 6.26 -2.39 -0.01 1.26 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.13 7.31 -2.39 -0.02 2.11 16 38 H 0.10 1.53 6.32 -2.39 -0.02 1.51 16 Total: -1.00 -63.07 319.71 4.59 -58.48 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.03 Total: 7.05 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.01 Total: -7.96 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -4.00 Total: -94.37 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.67 Total: -7.98 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -63.07 4.59 -58.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.511 kcal (2) G-P(sol) polarization free energy of solvation -63.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds