Wall clock time and date at job start Tue Mar 31 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.46851 * 2 1 4 4 C 1.34740 * 116.99980 * 179.97438 * 3 2 1 5 5 O 1.21484 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.47606 * 119.99949 * 179.97438 * 4 3 2 7 7 N 1.33055 * 120.16800 * 355.20149 * 6 4 3 8 8 C 1.31702 * 120.01043 * 180.02562 * 7 6 4 9 9 C 1.38843 * 120.34598 * 0.02562 * 8 7 6 10 10 N 1.32017 * 120.33168 * 359.70266 * 9 8 7 11 11 C 1.32838 * 119.98937 * 0.55798 * 10 9 8 12 12 N 1.38232 * 120.17812 * 179.74767 * 11 10 9 13 13 C 1.46906 * 110.99981 * 58.24460 * 12 11 10 14 14 C 1.53001 * 109.47051 * 75.28257 * 13 12 11 15 15 C 1.46899 * 110.99728 * 294.29751 * 12 11 10 16 16 C 1.50707 * 109.47304 * 189.99900 * 15 12 11 17 17 H 1.07997 * 119.99603 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00126 * 179.97438 * 16 15 12 19 19 N 1.31521 * 120.00254 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47175 * 59.99680 * 20 18 16 22 22 H 1.48501 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47104 * 299.99541 * 20 18 16 24 24 H 1.09006 * 109.46728 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47059 * 299.99411 * 1 2 3 26 26 H 1.08996 * 109.47219 * 59.99762 * 1 2 3 27 27 H 1.08998 * 109.47409 * 239.99898 * 2 1 3 28 28 H 1.09004 * 109.47028 * 120.00026 * 2 1 3 29 29 H 1.08002 * 119.82878 * 180.02562 * 8 7 6 30 30 H 1.07995 * 119.82971 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.47254 * 195.27972 * 13 12 11 32 32 H 1.08994 * 109.47037 * 315.28263 * 13 12 11 33 33 H 1.09004 * 109.47369 * 62.41404 * 14 13 12 34 34 H 1.08992 * 109.47123 * 182.41816 * 14 13 12 35 35 H 1.09004 * 109.46991 * 302.42081 * 14 13 12 36 36 H 1.09001 * 109.47172 * 309.99379 * 15 12 11 37 37 H 1.08997 * 109.47562 * 69.99569 * 15 12 11 38 38 H 0.96995 * 120.00279 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5456 0.0005 5 8 4.0898 0.5822 0.0005 6 6 3.9138 2.9096 0.0000 7 7 3.1101 3.9655 -0.0972 8 6 3.6168 5.1812 -0.0979 9 6 4.9888 5.3693 0.0019 10 7 5.7984 4.3315 0.1045 11 6 5.3020 3.0994 0.1012 12 7 6.1465 2.0098 0.2031 13 6 6.9418 2.0736 1.4367 14 6 6.0603 1.7043 2.6314 15 6 7.0141 1.9040 -0.9776 16 6 7.7405 0.5838 -0.9507 17 1 7.5745 -0.1072 -0.1375 18 6 8.6168 0.2584 -1.9640 19 7 8.8185 1.0998 -2.9546 20 14 9.5177 -1.3777 -1.9303 21 1 8.5303 -2.4868 -1.9398 22 1 10.3937 -1.4852 -3.1246 23 1 10.3449 -1.4620 -0.6999 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.9617 6.0362 -0.1766 30 1 5.3953 6.3699 0.0010 31 1 7.7742 1.3731 1.3690 32 1 7.3274 3.0845 1.5684 33 1 5.7093 0.6783 2.5207 34 1 6.6387 1.7932 3.5509 35 1 5.2046 2.3783 2.6738 36 1 6.4074 1.9665 -1.8810 37 1 7.7391 2.7179 -0.9698 38 1 9.4348 0.8707 -3.6677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:38 Heat of formation + Delta-G solvation = -14.439011 kcal Electronic energy + Delta-G solvation = -22361.398573 eV Core-core repulsion = 19012.302287 eV Total energy + Delta-G solvation = -3349.096286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18247 -39.55858 -37.21329 -36.01937 -33.93219 -32.68463 -31.65259 -31.05936 -29.73154 -26.69543 -25.66123 -23.92047 -22.93982 -22.52052 -21.16109 -20.56251 -18.18142 -17.36756 -16.64607 -16.32762 -16.26629 -15.92679 -15.26831 -14.75340 -14.44140 -13.88343 -13.82797 -13.48625 -13.25415 -13.01963 -12.69790 -12.37149 -12.18836 -11.76789 -11.49954 -11.46106 -11.39210 -11.13770 -11.00026 -10.77814 -10.54678 -10.37395 -10.23628 -10.16552 -10.02722 -9.48091 -9.03750 -8.90642 -8.46158 -7.57791 -6.03229 -4.04180 0.53672 1.20521 2.78021 2.84283 3.35431 3.38796 3.42649 3.90348 4.06234 4.20854 4.44394 4.48418 4.80088 5.02157 5.06049 5.14341 5.28806 5.32074 5.37610 5.42285 5.67716 5.76965 5.82971 5.88828 5.97536 5.99748 6.18663 6.34936 6.62699 6.70578 6.73117 7.13007 7.25285 7.29975 7.73604 7.80321 7.92486 8.06425 8.25794 8.44919 9.01450 9.58627 11.07961 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.006404 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.420476 B = 4371.508389 C = 5397.217946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.349 6.349 4 C 0.513 3.487 5 O -0.430 6.430 6 C 0.051 3.949 7 N -0.389 5.389 8 C 0.019 3.981 9 C 0.094 3.906 10 N -0.471 5.471 11 C 0.341 3.659 12 N -0.473 5.473 13 C 0.059 3.941 14 C -0.143 4.143 15 C 0.208 3.792 16 C -0.503 4.503 17 H 0.068 0.932 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.026 0.974 37 H 0.009 0.991 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 5.428 7.621 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.267 6.267 4 C 0.351 3.649 5 O -0.311 6.311 6 C -0.090 4.090 7 N -0.106 5.106 8 C -0.144 4.144 9 C -0.070 4.070 10 N -0.189 5.189 11 C 0.111 3.889 12 N -0.197 5.197 13 C -0.068 4.068 14 C -0.201 4.201 15 C 0.086 3.914 16 C -0.541 4.541 17 H 0.086 0.914 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.191 0.809 30 H 0.188 0.812 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.856 4.554 7.470 15.550 hybrid contribution 0.961 -0.061 -0.293 1.006 sum -11.896 4.493 7.177 14.601 Atomic orbital electron populations 1.21771 0.92965 1.02544 1.03337 1.22984 0.94985 0.80653 1.02705 1.86631 1.23777 1.31506 1.84773 1.20191 0.80766 0.88314 0.75584 1.91043 1.59535 1.39853 1.40638 1.20894 0.90329 0.91761 1.05985 1.68369 1.38268 0.98723 1.05284 1.23713 0.94998 0.95248 1.00480 1.24054 0.91507 0.99154 0.92268 1.69007 1.39273 0.99620 1.10985 1.21128 0.91788 0.88900 0.87086 1.60399 1.23524 1.29772 1.06045 1.22097 0.96210 1.00955 0.87527 1.21783 0.99066 1.02046 0.97174 1.19772 0.89418 0.97760 0.84460 1.21024 1.22924 1.01830 1.08363 0.91379 1.24968 0.96912 0.97354 0.95269 1.69958 1.36674 1.35927 1.11285 0.86497 0.79437 0.83813 0.77305 1.20102 1.21383 1.20163 0.90513 0.91692 0.91585 0.91152 0.91332 0.80890 0.81219 0.88316 0.94258 0.91694 0.92804 0.94807 0.95642 0.97333 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.81 6.20 37.16 0.23 1.04 16 3 O -0.35 -5.89 10.06 -40.60 -0.41 -6.30 16 4 C 0.51 10.10 7.93 34.55 0.27 10.37 16 5 O -0.43 -9.61 14.84 -19.25 -0.29 -9.89 16 6 C 0.05 0.99 6.77 -82.67 -0.56 0.43 16 7 N -0.39 -6.43 10.27 -9.50 -0.10 -6.53 16 8 C 0.02 0.24 11.21 -17.38 -0.19 0.05 16 9 C 0.09 1.28 11.22 -17.25 -0.19 1.09 16 10 N -0.47 -8.76 9.59 -11.98 -0.11 -8.87 16 11 C 0.34 7.03 4.55 -154.88 -0.70 6.33 16 12 N -0.47 -10.86 2.37 -174.24 -0.41 -11.28 16 13 C 0.06 1.20 5.49 -3.82 -0.02 1.18 16 14 C -0.14 -2.46 10.04 37.16 0.37 -2.09 16 15 C 0.21 5.64 4.54 -4.97 -0.02 5.61 16 16 C -0.50 -14.35 8.24 -34.44 -0.28 -14.64 16 17 H 0.07 1.93 7.30 -52.49 -0.38 1.54 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 20 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.10 2.14 6.58 -51.93 -0.34 1.80 16 32 H 0.04 0.78 7.40 -51.93 -0.38 0.40 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.57 7.64 -51.93 -0.40 0.18 16 36 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -33.68 329.72 -6.74 -40.41 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.29 Total: -3.00 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -0.82 Total: 9.84 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.11 Total: -53.00 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.69 Total: -16.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.68 -6.74 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.976 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds