Wall clock time and date at job start Tue Mar 31 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.46851 * 2 1 4 4 C 1.34740 * 116.99980 * 179.97438 * 3 2 1 5 5 O 1.21484 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.47606 * 119.99949 * 179.97438 * 4 3 2 7 7 N 1.33055 * 120.16800 * 355.20149 * 6 4 3 8 8 C 1.31702 * 120.01043 * 180.02562 * 7 6 4 9 9 C 1.38843 * 120.34598 * 0.02562 * 8 7 6 10 10 N 1.32017 * 120.33168 * 359.70266 * 9 8 7 11 11 C 1.32838 * 119.98937 * 0.55798 * 10 9 8 12 12 N 1.38232 * 120.17812 * 179.74767 * 11 10 9 13 13 C 1.46906 * 110.99981 * 58.24460 * 12 11 10 14 14 C 1.53001 * 109.47051 * 75.28257 * 13 12 11 15 15 C 1.46899 * 110.99728 * 294.29751 * 12 11 10 16 16 C 1.50707 * 109.47304 * 189.99900 * 15 12 11 17 17 H 1.07997 * 119.99603 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00126 * 179.97438 * 16 15 12 19 19 N 1.31521 * 120.00254 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47175 * 59.99680 * 20 18 16 22 22 H 1.48501 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47104 * 299.99541 * 20 18 16 24 24 H 1.09006 * 109.46728 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47059 * 299.99411 * 1 2 3 26 26 H 1.08996 * 109.47219 * 59.99762 * 1 2 3 27 27 H 1.08998 * 109.47409 * 239.99898 * 2 1 3 28 28 H 1.09004 * 109.47028 * 120.00026 * 2 1 3 29 29 H 1.08002 * 119.82878 * 180.02562 * 8 7 6 30 30 H 1.07995 * 119.82971 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.47254 * 195.27972 * 13 12 11 32 32 H 1.08994 * 109.47037 * 315.28263 * 13 12 11 33 33 H 1.09004 * 109.47369 * 62.41404 * 14 13 12 34 34 H 1.08992 * 109.47123 * 182.41816 * 14 13 12 35 35 H 1.09004 * 109.46991 * 302.42081 * 14 13 12 36 36 H 1.09001 * 109.47172 * 309.99379 * 15 12 11 37 37 H 1.08997 * 109.47562 * 69.99569 * 15 12 11 38 38 H 0.96995 * 120.00279 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5456 0.0005 5 8 4.0898 0.5822 0.0005 6 6 3.9138 2.9096 0.0000 7 7 3.1101 3.9655 -0.0972 8 6 3.6168 5.1812 -0.0979 9 6 4.9888 5.3693 0.0019 10 7 5.7984 4.3315 0.1045 11 6 5.3020 3.0994 0.1012 12 7 6.1465 2.0098 0.2031 13 6 6.9418 2.0736 1.4367 14 6 6.0603 1.7043 2.6314 15 6 7.0141 1.9040 -0.9776 16 6 7.7405 0.5838 -0.9507 17 1 7.5745 -0.1072 -0.1375 18 6 8.6168 0.2584 -1.9640 19 7 8.8185 1.0998 -2.9546 20 14 9.5177 -1.3777 -1.9303 21 1 8.5303 -2.4868 -1.9398 22 1 10.3937 -1.4852 -3.1246 23 1 10.3449 -1.4620 -0.6999 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.9617 6.0362 -0.1766 30 1 5.3953 6.3699 0.0010 31 1 7.7742 1.3731 1.3690 32 1 7.3274 3.0845 1.5684 33 1 5.7093 0.6783 2.5207 34 1 6.6387 1.7932 3.5509 35 1 5.2046 2.3783 2.6738 36 1 6.4074 1.9665 -1.8810 37 1 7.7391 2.7179 -0.9698 38 1 9.4348 0.8707 -3.6677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:38 Heat of formation + Delta-G solvation = -37.181916 kcal Electronic energy + Delta-G solvation = -22362.384779 eV Core-core repulsion = 19012.302287 eV Total energy + Delta-G solvation = -3350.082492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53966 -40.95666 -38.81252 -37.45287 -35.33591 -34.77886 -32.81415 -32.30484 -31.42107 -28.61582 -26.94593 -25.42020 -24.45492 -24.02006 -22.46826 -22.19777 -19.53942 -18.87146 -18.42181 -17.75481 -17.62735 -17.56607 -16.95979 -16.18559 -15.98642 -15.31293 -15.15841 -14.92903 -14.76668 -14.37515 -14.23573 -14.00229 -13.57630 -12.98902 -12.93282 -12.85011 -12.80465 -12.76234 -12.54601 -12.47190 -12.29891 -12.02624 -11.95253 -11.67777 -11.52589 -11.45932 -10.67044 -10.45127 -10.28078 -9.30999 -8.24854 -6.34667 -0.79009 -0.07102 1.38496 1.43048 1.43245 1.49019 1.50937 2.35768 2.59610 2.66008 2.99498 3.08206 3.24946 3.47186 3.95429 4.03574 4.07815 4.13000 4.18138 4.31266 4.38614 4.39425 4.59179 4.76706 4.84721 4.89916 4.95397 5.01199 5.12220 5.12570 5.16434 5.29017 5.42001 5.61158 5.95125 6.01169 6.05526 6.50991 6.55334 6.76942 6.84281 7.33444 8.86987 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.006404 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.420476 B = 4371.508389 C = 5397.217946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.348 6.348 4 C 0.513 3.487 5 O -0.472 6.472 6 C 0.029 3.971 7 N -0.400 5.400 8 C 0.048 3.952 9 C 0.107 3.893 10 N -0.501 5.501 11 C 0.307 3.693 12 N -0.481 5.481 13 C 0.060 3.940 14 C -0.126 4.126 15 C 0.235 3.765 16 C -0.519 4.519 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.262 1.262 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.234 0.766 30 H 0.223 0.777 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.034 0.966 36 H -0.016 1.016 37 H -0.021 1.021 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 6.659 8.610 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.265 6.265 4 C 0.353 3.647 5 O -0.356 6.356 6 C -0.109 4.109 7 N -0.118 5.118 8 C -0.117 4.117 9 C -0.058 4.058 10 N -0.220 5.220 11 C 0.079 3.921 12 N -0.205 5.205 13 C -0.067 4.067 14 C -0.184 4.184 15 C 0.110 3.890 16 C -0.557 4.557 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.187 1.187 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.250 0.750 30 H 0.240 0.760 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.002 0.998 37 H -0.003 1.003 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.219 5.753 8.487 17.530 hybrid contribution 1.236 -0.181 -0.605 1.388 sum -12.983 5.573 7.882 16.179 Atomic orbital electron populations 1.21789 0.89623 1.04428 1.03757 1.23351 0.97503 0.79100 1.02369 1.86628 1.22210 1.33540 1.84084 1.20450 0.81335 0.88386 0.74488 1.91007 1.60539 1.41153 1.42883 1.20752 0.90021 0.92498 1.07628 1.68458 1.37906 0.99392 1.06026 1.24757 0.95628 0.95374 0.95978 1.25003 0.91801 0.99823 0.89160 1.68919 1.41002 0.99954 1.12084 1.20953 0.91798 0.89180 0.90152 1.60147 1.22821 1.32476 1.05060 1.22092 0.96201 1.00358 0.88010 1.21637 0.98814 1.01069 0.96880 1.19196 0.88491 0.96200 0.85069 1.21285 1.23455 1.02421 1.08519 0.91746 1.25918 0.97609 1.01291 0.94621 1.70089 1.37375 1.38026 1.11982 0.85383 0.78189 0.78711 0.78021 1.19765 1.20489 1.18652 0.87863 0.90950 0.91404 0.92091 0.91234 0.74964 0.76028 0.90443 0.94208 0.92945 0.89640 0.94701 0.99771 1.00283 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.73 16 2 C 0.05 1.36 6.20 71.98 0.45 1.80 16 3 O -0.35 -11.87 10.06 -56.50 -0.57 -12.44 16 4 C 0.51 20.97 7.93 70.30 0.56 21.53 16 5 O -0.47 -22.33 14.84 19.89 0.30 -22.03 16 6 C 0.03 1.12 6.77 41.98 0.28 1.41 16 7 N -0.40 -12.52 10.27 -183.98 -1.89 -14.41 16 8 C 0.05 1.03 11.21 84.86 0.95 1.98 16 9 C 0.11 2.56 11.22 84.81 0.95 3.51 16 10 N -0.50 -18.47 9.59 -191.83 -1.84 -20.31 16 11 C 0.31 13.03 4.55 133.52 0.61 13.64 16 12 N -0.48 -23.29 2.37 -705.17 -1.67 -24.97 16 13 C 0.06 2.54 5.49 86.30 0.47 3.02 16 14 C -0.13 -4.38 10.04 71.98 0.72 -3.66 16 15 C 0.23 13.54 4.54 85.56 0.39 13.93 16 16 C -0.52 -31.04 8.24 25.60 0.21 -30.83 16 17 H 0.06 3.81 7.30 -2.91 -0.02 3.79 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 20 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 24 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.08 3.55 6.58 -2.38 -0.02 3.53 16 32 H 0.04 1.64 7.40 -2.39 -0.02 1.63 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.03 1.18 7.64 -2.39 -0.02 1.16 16 36 H -0.02 -1.02 8.05 -2.39 -0.02 -1.04 16 37 H -0.02 -1.27 8.12 -2.39 -0.02 -1.29 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.36 329.72 4.49 -74.87 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.06 Total: 3.91 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 6.80 Total: 25.26 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -5.12 Total: -117.55 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.27 Total: -34.47 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -79.36 4.49 -74.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.693 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds