Wall clock time and date at job start Tue Mar 31 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47044 * 2 1 4 4 C 1.34763 * 116.99563 * 180.02562 * 3 2 1 5 5 O 1.21518 * 120.00728 * 0.02562 * 4 3 2 6 6 C 1.47304 * 119.99489 * 179.97438 * 4 3 2 7 7 C 1.39828 * 120.99824 * 5.51439 * 6 4 3 8 8 N 1.32192 * 118.98468 * 180.25119 * 7 6 4 9 9 C 1.31976 * 121.20571 * 359.74272 * 8 7 6 10 10 N 1.31666 * 122.24190 * 0.02562 * 9 8 7 11 11 C 1.32977 * 120.85310 * 359.97438 * 10 9 8 12 12 N 1.37841 * 120.64776 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99997 * 301.53415 * 12 11 10 14 14 C 1.52991 * 109.47051 * 287.36628 * 13 12 11 15 15 C 1.46901 * 110.99921 * 65.48847 * 12 11 10 16 16 C 1.50702 * 109.47312 * 163.93192 * 15 12 11 17 17 H 1.07994 * 119.99743 * 354.84951 * 16 15 12 18 18 C 1.37875 * 120.00246 * 174.84685 * 16 15 12 19 19 N 1.31514 * 120.00041 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99897 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47063 * 89.99565 * 20 18 16 22 22 H 1.48497 * 109.47257 * 209.99907 * 20 18 16 23 23 H 1.48505 * 109.47158 * 329.99689 * 20 18 16 24 24 H 1.08994 * 109.47341 * 60.00139 * 1 2 3 25 25 H 1.08999 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47077 * 299.99836 * 1 2 3 27 27 H 1.09005 * 109.47077 * 240.00164 * 2 1 3 28 28 H 1.09003 * 109.47348 * 120.00483 * 2 1 3 29 29 H 1.07994 * 120.50690 * 359.97438 * 7 6 4 30 30 H 1.08001 * 118.87707 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.46639 * 47.36363 * 13 12 11 32 32 H 1.08994 * 109.46806 * 167.36433 * 13 12 11 33 33 H 1.09001 * 109.47626 * 65.33774 * 14 13 12 34 34 H 1.09003 * 109.47310 * 185.33756 * 14 13 12 35 35 H 1.09003 * 109.47528 * 305.33828 * 14 13 12 36 36 H 1.09006 * 109.47356 * 43.93340 * 15 12 11 37 37 H 1.08999 * 109.47128 * 283.93254 * 15 12 11 38 38 H 0.96996 * 119.99457 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0903 0.5818 -0.0015 6 6 3.9130 2.9067 -0.0011 7 6 3.0858 4.0282 0.1140 8 7 3.6330 5.2315 0.1039 9 6 4.9387 5.3880 -0.0072 10 7 5.7621 4.3661 -0.1138 11 6 5.3035 3.1179 -0.1131 12 7 6.1693 2.0512 -0.2255 13 6 6.9499 2.1353 -1.4671 14 6 6.0476 1.8118 -2.6596 15 6 7.0514 1.9634 0.9460 16 6 7.6949 0.6014 0.9894 17 1 7.4089 -0.1540 0.2726 18 6 8.6489 0.3198 1.9441 19 7 9.2108 -0.8686 1.9817 20 14 9.1432 1.6263 3.1844 21 1 8.2719 1.5261 4.3827 22 1 10.5587 1.4201 3.5829 23 1 8.9919 2.9713 2.5734 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0159 3.9132 0.2052 30 1 5.3456 6.3884 -0.0109 31 1 7.3500 3.1432 -1.5771 32 1 7.7716 1.4202 -1.4287 33 1 5.2810 2.5809 -2.7544 34 1 6.6460 1.7810 -3.5702 35 1 5.5729 0.8430 -2.5039 36 1 6.4672 2.1183 1.8531 37 1 7.8246 2.7286 0.8767 38 1 9.8817 -1.0668 2.6536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:30 Heat of formation + Delta-G solvation = -14.438546 kcal Electronic energy + Delta-G solvation = -22392.143172 eV Core-core repulsion = 19043.046906 eV Total energy + Delta-G solvation = -3349.096266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23085 -39.67538 -37.45654 -36.10351 -33.28555 -32.67646 -32.10639 -31.32171 -30.25039 -27.31062 -25.43920 -24.06110 -22.99560 -22.24420 -21.15034 -20.66947 -18.07633 -17.55582 -16.97084 -16.44067 -16.38778 -16.20579 -15.39609 -14.60576 -14.31508 -13.97256 -13.77644 -13.73386 -13.54017 -13.19997 -12.84294 -12.67112 -12.43346 -11.86552 -11.71333 -11.52375 -11.40581 -11.26219 -10.97937 -10.58073 -10.52747 -10.38768 -10.35635 -10.10140 -9.93281 -9.42089 -9.41077 -9.22130 -8.59087 -7.80634 -6.06152 -4.03804 0.48868 1.08058 2.72597 2.85545 3.27169 3.34376 3.37373 3.83683 3.91269 4.09387 4.31829 4.40287 4.76037 4.93007 4.98692 5.00837 5.18457 5.24523 5.30642 5.41820 5.62301 5.71557 5.73513 5.77446 5.88323 5.95454 6.14171 6.28385 6.51157 6.58583 6.60452 6.76177 6.81306 6.97306 7.50639 7.57489 7.89390 8.04943 8.15216 8.59808 9.06441 9.53776 11.06615 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.006569 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.905479 B = 4261.723605 C = 5064.511594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.368 6.368 4 C 0.502 3.498 5 O -0.432 6.432 6 C -0.213 4.213 7 C 0.201 3.799 8 N -0.543 5.543 9 C 0.327 3.673 10 N -0.554 5.554 11 C 0.425 3.575 12 N -0.470 5.470 13 C 0.060 3.940 14 C -0.145 4.145 15 C 0.177 3.823 16 C -0.503 4.503 17 H 0.087 0.913 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.867 3.133 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.265 1.265 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.180 0.820 30 H 0.197 0.803 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.017 0.983 37 H 0.010 0.990 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 8.132 -5.719 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.287 6.287 4 C 0.341 3.659 5 O -0.314 6.314 6 C -0.221 4.221 7 C 0.034 3.966 8 N -0.257 5.257 9 C 0.039 3.961 10 N -0.272 5.272 11 C 0.189 3.811 12 N -0.193 5.193 13 C -0.066 4.066 14 C -0.202 4.202 15 C 0.054 3.946 16 C -0.542 4.542 17 H 0.105 0.895 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.694 3.306 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.197 0.803 30 H 0.213 0.787 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.424 8.130 -5.640 17.492 hybrid contribution 0.458 0.387 0.904 1.085 sum -13.966 8.517 -4.736 17.030 Atomic orbital electron populations 1.21795 0.92929 1.02800 1.03234 1.22961 0.94809 0.80168 1.02961 1.86474 1.24286 1.32395 1.85563 1.20328 0.80531 0.89286 0.75763 1.91063 1.59199 1.40731 1.40418 1.20801 0.94664 0.93427 1.13186 1.23597 1.00877 0.86165 0.85931 1.68465 1.14510 1.25735 1.17030 1.25047 0.85307 0.98581 0.87169 1.68955 1.41205 1.00363 1.16697 1.20687 0.90909 0.87997 0.81550 1.60103 1.21991 1.31688 1.05552 1.22111 0.96308 1.01255 0.86920 1.21790 0.99319 1.01841 0.97286 1.20220 0.89815 0.98897 0.85685 1.20910 1.20153 0.96285 1.16807 0.89456 1.24824 0.95826 0.95214 0.97104 1.69877 1.27801 1.20520 1.35287 0.86989 0.78223 0.83018 0.82391 1.20240 1.20916 1.19008 0.91671 0.90376 0.91610 0.91187 0.91032 0.80341 0.78679 0.94004 0.88006 0.94806 0.92410 0.91440 0.96463 0.97207 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.77 6.20 37.16 0.23 1.00 16 3 O -0.37 -5.16 9.58 -40.66 -0.39 -5.55 16 4 C 0.50 8.78 7.89 34.42 0.27 9.05 16 5 O -0.43 -9.24 15.00 -19.28 -0.29 -9.53 16 6 C -0.21 -3.61 5.92 -104.53 -0.62 -4.23 16 7 C 0.20 2.75 10.89 -16.80 -0.18 2.56 16 8 N -0.54 -7.51 10.41 -14.29 -0.15 -7.66 16 9 C 0.33 4.62 12.26 -92.11 -1.13 3.49 16 10 N -0.55 -9.80 9.60 -13.59 -0.13 -9.93 16 11 C 0.43 8.20 4.51 -154.90 -0.70 7.50 16 12 N -0.47 -10.32 2.52 -174.12 -0.44 -10.76 16 13 C 0.06 1.19 5.49 -3.83 -0.02 1.17 16 14 C -0.14 -2.42 9.90 37.15 0.37 -2.05 16 15 C 0.18 4.47 3.66 -4.97 -0.02 4.45 16 16 C -0.50 -14.48 8.88 -34.44 -0.31 -14.78 16 17 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 20 Si 0.87 21.71 27.57 -169.99 -4.69 17.03 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.47 6.40 56.52 0.36 -6.10 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.18 1.85 7.72 -52.49 -0.40 1.44 16 30 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.04 0.80 7.48 -51.93 -0.39 0.41 16 32 H 0.10 2.19 7.15 -51.93 -0.37 1.82 16 33 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.45 7.65 -51.93 -0.40 0.05 16 37 H 0.01 0.26 6.75 -51.93 -0.35 -0.09 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -33.33 326.51 -7.50 -40.83 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.29 Total: -1.92 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.82 Total: 9.32 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.06 Total: -55.10 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.68 Total: -15.08 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.69 Total: 17.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.33 -7.50 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.391 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds