Wall clock time and date at job start Tue Mar 31 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47044 * 2 1 4 4 C 1.34763 * 116.99563 * 180.02562 * 3 2 1 5 5 O 1.21518 * 120.00728 * 0.02562 * 4 3 2 6 6 C 1.47304 * 119.99489 * 179.97438 * 4 3 2 7 7 C 1.39828 * 120.99824 * 5.51439 * 6 4 3 8 8 N 1.32192 * 118.98468 * 180.25119 * 7 6 4 9 9 C 1.31976 * 121.20571 * 359.74272 * 8 7 6 10 10 N 1.31666 * 122.24190 * 0.02562 * 9 8 7 11 11 C 1.32977 * 120.85310 * 359.97438 * 10 9 8 12 12 N 1.37841 * 120.64776 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99997 * 301.53415 * 12 11 10 14 14 C 1.52991 * 109.47051 * 287.36628 * 13 12 11 15 15 C 1.46901 * 110.99921 * 65.48847 * 12 11 10 16 16 C 1.50702 * 109.47312 * 163.93192 * 15 12 11 17 17 H 1.07994 * 119.99743 * 354.84951 * 16 15 12 18 18 C 1.37875 * 120.00246 * 174.84685 * 16 15 12 19 19 N 1.31514 * 120.00041 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99897 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47063 * 89.99565 * 20 18 16 22 22 H 1.48497 * 109.47257 * 209.99907 * 20 18 16 23 23 H 1.48505 * 109.47158 * 329.99689 * 20 18 16 24 24 H 1.08994 * 109.47341 * 60.00139 * 1 2 3 25 25 H 1.08999 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47077 * 299.99836 * 1 2 3 27 27 H 1.09005 * 109.47077 * 240.00164 * 2 1 3 28 28 H 1.09003 * 109.47348 * 120.00483 * 2 1 3 29 29 H 1.07994 * 120.50690 * 359.97438 * 7 6 4 30 30 H 1.08001 * 118.87707 * 180.02562 * 9 8 7 31 31 H 1.09005 * 109.46639 * 47.36363 * 13 12 11 32 32 H 1.08994 * 109.46806 * 167.36433 * 13 12 11 33 33 H 1.09001 * 109.47626 * 65.33774 * 14 13 12 34 34 H 1.09003 * 109.47310 * 185.33756 * 14 13 12 35 35 H 1.09003 * 109.47528 * 305.33828 * 14 13 12 36 36 H 1.09006 * 109.47356 * 43.93340 * 15 12 11 37 37 H 1.08999 * 109.47128 * 283.93254 * 15 12 11 38 38 H 0.96996 * 119.99457 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0903 0.5818 -0.0015 6 6 3.9130 2.9067 -0.0011 7 6 3.0858 4.0282 0.1140 8 7 3.6330 5.2315 0.1039 9 6 4.9387 5.3880 -0.0072 10 7 5.7621 4.3661 -0.1138 11 6 5.3035 3.1179 -0.1131 12 7 6.1693 2.0512 -0.2255 13 6 6.9499 2.1353 -1.4671 14 6 6.0476 1.8118 -2.6596 15 6 7.0514 1.9634 0.9460 16 6 7.6949 0.6014 0.9894 17 1 7.4089 -0.1540 0.2726 18 6 8.6489 0.3198 1.9441 19 7 9.2108 -0.8686 1.9817 20 14 9.1432 1.6263 3.1844 21 1 8.2719 1.5261 4.3827 22 1 10.5587 1.4201 3.5829 23 1 8.9919 2.9713 2.5734 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0159 3.9132 0.2052 30 1 5.3456 6.3884 -0.0109 31 1 7.3500 3.1432 -1.5771 32 1 7.7716 1.4202 -1.4287 33 1 5.2810 2.5809 -2.7544 34 1 6.6460 1.7810 -3.5702 35 1 5.5729 0.8430 -2.5039 36 1 6.4672 2.1183 1.8531 37 1 7.8246 2.7286 0.8767 38 1 9.8817 -1.0668 2.6536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:30 Heat of formation + Delta-G solvation = -35.344933 kcal Electronic energy + Delta-G solvation = -22393.049741 eV Core-core repulsion = 19043.046906 eV Total energy + Delta-G solvation = -3350.002835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51856 -40.94943 -38.97980 -37.42291 -34.96200 -34.38456 -33.39324 -32.31522 -31.94120 -29.17264 -26.63389 -25.43869 -24.12415 -23.98645 -22.36258 -22.27846 -19.38528 -19.21262 -18.45706 -18.05309 -17.62048 -17.44129 -17.01681 -16.19765 -15.86921 -15.41254 -15.20378 -14.87553 -14.81893 -14.55700 -14.44433 -14.39292 -13.56268 -13.11951 -12.98943 -12.83366 -12.82666 -12.76617 -12.43865 -12.43275 -12.16514 -11.95385 -11.69694 -11.62410 -11.45024 -11.40901 -10.84297 -10.74088 -10.51165 -9.46387 -8.32557 -6.36292 -0.75611 -0.17513 1.28502 1.29862 1.40544 1.54050 1.55343 2.28171 2.47757 2.61421 2.98629 3.05329 3.09621 3.56893 3.66730 3.97698 4.06609 4.14047 4.18583 4.28434 4.40771 4.43376 4.53222 4.62615 4.70164 4.85034 4.89707 4.99264 5.03329 5.10824 5.17804 5.21375 5.39257 5.45469 5.73702 5.77269 6.14869 6.50562 6.69803 6.80898 6.89258 7.25226 8.84021 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.006569 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.905479 B = 4261.723605 C = 5064.511594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.508 3.492 5 O -0.485 6.485 6 C -0.230 4.230 7 C 0.225 3.775 8 N -0.534 5.534 9 C 0.335 3.665 10 N -0.576 5.576 11 C 0.402 3.598 12 N -0.486 5.486 13 C 0.062 3.938 14 C -0.129 4.129 15 C 0.196 3.804 16 C -0.508 4.508 17 H 0.040 0.960 18 C 0.016 3.984 19 N -0.941 5.941 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.253 1.253 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.217 0.783 30 H 0.238 0.762 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 11.114 -5.477 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 O -0.272 6.272 4 C 0.349 3.651 5 O -0.371 6.371 6 C -0.237 4.237 7 C 0.057 3.943 8 N -0.248 5.248 9 C 0.048 3.952 10 N -0.294 5.294 11 C 0.166 3.834 12 N -0.209 5.209 13 C -0.065 4.065 14 C -0.187 4.187 15 C 0.071 3.929 16 C -0.547 4.547 17 H 0.059 0.941 18 C -0.182 4.182 19 N -0.581 5.581 20 Si 0.762 3.238 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.176 1.176 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.254 0.746 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.426 11.144 -5.420 20.576 hybrid contribution 0.937 -0.538 0.752 1.317 sum -15.489 10.606 -4.668 19.344 Atomic orbital electron populations 1.21802 0.89451 1.04384 1.04081 1.23274 0.97385 0.78967 1.02174 1.86474 1.22220 1.33735 1.84722 1.20542 0.81205 0.89089 0.74282 1.91053 1.60543 1.42320 1.43139 1.20866 0.94161 0.94189 1.14525 1.24136 1.02032 0.84855 0.83244 1.68636 1.14314 1.25316 1.16540 1.25870 0.85191 0.99207 0.84884 1.68900 1.42394 1.00277 1.17852 1.20597 0.91181 0.88067 0.83585 1.59873 1.21744 1.34407 1.04853 1.22081 0.96130 1.00682 0.87561 1.21649 0.99185 1.00890 0.96951 1.19790 0.89883 0.96193 0.87033 1.21009 1.20587 0.97200 1.15856 0.94126 1.25719 0.95682 0.97602 0.99247 1.70025 1.28715 1.22839 1.36548 0.85850 0.78248 0.80255 0.79457 1.19446 1.19777 1.17649 0.90634 0.88439 0.90863 0.91770 0.92282 0.76660 0.74614 0.93200 0.91064 0.93810 0.89737 0.93408 0.97417 0.97479 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.29 71.98 0.74 -1.21 16 2 C 0.06 1.28 6.20 71.98 0.45 1.73 16 3 O -0.35 -9.50 9.58 -56.74 -0.54 -10.05 16 4 C 0.51 17.79 7.89 70.21 0.55 18.34 16 5 O -0.48 -21.70 15.00 19.78 0.30 -21.41 16 6 C -0.23 -7.52 5.92 -19.81 -0.12 -7.63 16 7 C 0.22 5.39 10.89 85.02 0.93 6.32 16 8 N -0.53 -12.68 10.41 -199.12 -2.07 -14.76 16 9 C 0.34 8.28 12.26 180.87 2.22 10.50 16 10 N -0.58 -19.29 9.60 -196.90 -1.89 -21.18 16 11 C 0.40 15.30 4.51 133.77 0.60 15.91 16 12 N -0.49 -21.97 2.52 -704.81 -1.77 -23.74 16 13 C 0.06 2.52 5.49 86.30 0.47 2.99 16 14 C -0.13 -4.36 9.90 71.98 0.71 -3.65 16 15 C 0.20 10.13 3.66 85.56 0.31 10.44 16 16 C -0.51 -30.75 8.88 25.60 0.23 -30.53 16 17 H 0.04 2.77 8.03 -2.91 -0.02 2.75 16 18 C 0.02 0.93 5.47 84.65 0.46 1.40 16 19 N -0.94 -59.93 13.96 21.45 0.30 -59.63 16 20 Si 0.94 45.37 27.57 68.60 1.89 47.26 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.25 -11.59 6.40 99.48 0.64 -10.96 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.22 3.47 7.72 -2.91 -0.02 3.45 16 30 H 0.24 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.05 1.91 7.48 -2.38 -0.02 1.90 16 32 H 0.07 3.28 7.15 -2.39 -0.02 3.26 16 33 H 0.04 1.37 7.75 -2.39 -0.02 1.35 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.01 0.41 7.65 -2.38 -0.02 0.39 16 37 H 0.01 0.38 6.75 -2.39 -0.02 0.37 16 38 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -76.31 326.51 4.75 -71.56 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.99 Total: 7.33 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 7.56 Total: 24.60 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -5.44 Total: -119.31 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.25 Total: -31.45 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.89 Total: 47.26 kcal Total: -76.31 4.75 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.213 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds