Wall clock time and date at job start Tue Mar 31 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35966 * 116.99607 * 2 1 4 4 C 1.39420 * 119.82067 * 359.97438 * 3 2 1 5 5 C 1.38101 * 120.56587 * 179.74056 * 4 3 2 6 6 C 1.38717 * 120.20084 * 0.55639 * 5 4 3 7 7 N 1.38854 * 120.18114 * 179.71644 * 6 5 4 8 8 C 1.46500 * 119.99685 * 359.72940 * 7 6 5 9 9 C 1.53002 * 109.47062 * 179.97438 * 8 7 6 10 10 H 1.08993 * 112.90726 * 316.24935 * 9 8 7 11 11 C 1.53785 * 113.61334 * 87.50267 * 9 8 7 12 12 C 1.54052 * 87.07811 * 139.97714 * 11 9 8 13 13 H 1.08996 * 113.69402 * 220.05653 * 12 11 9 14 14 F 1.39900 * 113.61111 * 89.07314 * 12 11 9 15 15 C 1.53783 * 113.61402 * 184.99945 * 9 8 7 16 16 C 1.41539 * 119.63766 * 359.45177 * 6 5 4 17 17 C 1.41030 * 120.27754 * 180.29904 * 16 6 5 18 18 H 1.08007 * 119.99726 * 334.24270 * 17 16 6 19 19 C 1.39899 * 120.00534 * 154.24567 * 17 16 6 20 20 N 1.30892 * 119.99651 * 342.94741 * 19 17 16 21 21 Si 1.86799 * 120.00396 * 162.95165 * 19 17 16 22 22 H 1.48494 * 109.47122 * 94.63739 * 21 19 17 23 23 H 1.48495 * 109.47132 * 214.64187 * 21 19 17 24 24 H 1.48500 * 109.46878 * 334.63831 * 21 19 17 25 25 C 1.37840 * 119.81991 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47517 * 299.99868 * 1 2 3 28 28 H 1.09000 * 109.47056 * 59.99901 * 1 2 3 29 29 H 1.07996 * 119.71572 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.89824 * 180.27741 * 5 4 3 31 31 H 0.96997 * 120.00099 * 179.72667 * 7 6 5 32 32 H 1.09002 * 109.47309 * 59.99829 * 8 7 6 33 33 H 1.09000 * 109.47399 * 299.99527 * 8 7 6 34 34 H 1.09000 * 113.61334 * 254.53334 * 11 9 8 35 35 H 1.09004 * 113.61284 * 25.34806 * 11 9 8 36 36 H 1.09000 * 113.61858 * 334.56734 * 15 9 8 37 37 H 1.08995 * 113.61323 * 105.38920 * 15 9 8 38 38 H 0.97001 * 120.00208 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.10444 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2831 2.3783 -0.0005 5 6 1.8940 3.6169 0.0048 6 6 3.2778 3.7125 -0.0008 7 7 3.8915 4.9581 -0.0013 8 6 3.0771 6.1759 -0.0019 9 6 3.9927 7.4017 -0.0018 10 1 4.8273 7.3078 0.6929 11 6 4.4111 7.8582 -1.4094 12 6 4.2271 9.3037 -0.9096 13 1 3.7639 9.9648 -1.6420 14 9 5.3805 9.8493 -0.3359 15 6 3.2366 8.7352 0.1204 16 6 4.0609 2.5335 -0.0003 17 6 5.4688 2.6150 0.0004 18 1 5.9594 3.4872 -0.4060 19 6 6.2301 1.5661 0.5272 20 7 5.6688 0.6782 1.3082 21 14 8.0474 1.4328 0.1164 22 1 8.8455 2.0874 1.1839 23 1 8.4294 0.0010 0.0201 24 1 8.3120 2.1040 -1.1815 25 6 3.4229 1.2794 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2052 2.3130 -0.0005 30 1 1.2924 4.5138 0.0089 31 1 4.8594 5.0219 -0.0013 32 1 2.4479 6.1926 0.8880 33 1 2.4481 6.1919 -0.8920 34 1 5.4426 7.6107 -1.6601 35 1 3.7055 7.5713 -2.1892 36 1 2.2093 8.6895 -0.2409 37 1 3.3188 9.1951 1.1052 38 1 6.1964 -0.0493 1.6732 39 1 4.0100 0.3729 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168238836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:11 Heat of formation + Delta-G solvation = -49.199758 kcal Electronic energy + Delta-G solvation = -21354.305625 eV Core-core repulsion = 17983.782038 eV Total energy + Delta-G solvation = -3370.523587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.72450 -38.81668 -38.31137 -36.69446 -33.94088 -32.98766 -29.72356 -28.75653 -27.00849 -25.95566 -25.39066 -24.83197 -22.81465 -20.74767 -19.92946 -19.48113 -17.59367 -16.68828 -16.06234 -15.87894 -15.41463 -15.26973 -15.00917 -14.71878 -14.65937 -14.35789 -13.87270 -13.20834 -13.02089 -12.80902 -12.52775 -12.27896 -12.06180 -11.72296 -11.46213 -11.38889 -11.11792 -11.05061 -10.95181 -10.87536 -10.50500 -10.37276 -10.25320 -10.07211 -9.87095 -9.32961 -9.07064 -8.32228 -7.37449 -6.70138 -5.95138 -4.15893 2.82266 3.11813 3.14843 3.20941 3.27385 3.98822 4.12985 4.17260 4.42556 4.50681 4.60278 4.68563 4.71814 4.95356 5.49375 5.50764 5.53613 5.66261 5.69985 5.77281 5.78354 5.84895 5.92674 5.99131 6.07310 6.18311 6.23772 6.40712 6.45226 6.91258 7.02780 7.20903 7.49357 7.57660 7.67375 7.94234 8.09360 8.29507 8.64213 8.83827 8.89479 9.01681 9.16851 10.29355 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005436 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.413810 B = 5149.289127 C = 7185.739559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.092 3.908 4 C -0.278 4.278 5 C -0.150 4.150 6 C 0.094 3.906 7 N -0.749 5.749 8 C 0.150 3.850 9 C -0.119 4.119 10 H 0.098 0.902 11 C -0.154 4.154 12 C 0.060 3.940 13 H 0.094 0.906 14 F -0.200 7.200 15 C -0.153 4.153 16 C 0.098 3.902 17 C -0.462 4.462 18 H 0.074 0.926 19 C 0.077 3.923 20 N -0.791 5.791 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.172 4.172 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.279 0.721 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 10.221 -3.164 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.048 3.952 4 C -0.298 4.298 5 C -0.174 4.174 6 C -0.005 4.005 7 N -0.385 5.385 8 C 0.024 3.976 9 C -0.137 4.137 10 H 0.116 0.884 11 C -0.192 4.192 12 C 0.024 3.976 13 H 0.112 0.888 14 F -0.181 7.181 15 C -0.191 4.191 16 C 0.093 3.907 17 C -0.492 4.492 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.417 5.417 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.186 1.186 25 C -0.193 4.193 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.338 9.946 -3.001 11.258 hybrid contribution 0.903 0.092 0.040 0.908 sum -3.435 10.038 -2.961 11.015 Atomic orbital electron populations 1.22693 0.81277 1.01518 1.00242 1.85998 1.19028 1.29200 1.90415 1.18806 0.92399 0.82353 1.01625 1.20168 0.96880 0.92175 1.20607 1.19748 0.92229 0.95642 1.09743 1.17844 0.91037 0.85200 1.06372 1.43866 1.07334 1.01340 1.85915 1.20951 0.93080 0.83787 0.99800 1.22780 0.99350 0.94148 0.97454 0.88362 1.23682 1.03737 0.93764 0.98024 1.22474 0.83699 0.95158 0.96288 0.88849 1.92802 1.51748 1.87147 1.86370 1.23534 0.99135 0.96361 1.00080 1.16956 0.92759 0.88570 0.92393 1.19115 0.90809 1.03302 1.35979 0.90772 1.25798 1.00627 0.94806 0.92821 1.69867 1.38161 1.11627 1.22006 0.86399 0.82582 0.78410 0.79893 1.19798 1.20115 1.18593 1.20288 0.89250 0.98548 1.11251 0.90210 0.93943 0.94005 0.89009 0.89247 0.77016 0.93659 0.93629 0.90178 0.88193 0.88222 0.90235 0.91023 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.81 101.05 0.99 1.65 16 2 O -0.33 -7.61 10.49 -19.63 -0.21 -7.81 16 3 C 0.09 2.31 6.67 -39.29 -0.26 2.05 16 4 C -0.28 -6.38 9.03 -39.19 -0.35 -6.74 16 5 C -0.15 -3.38 9.28 -39.45 -0.37 -3.75 16 6 C 0.09 2.23 6.68 -83.25 -0.56 1.67 16 7 N -0.75 -14.82 5.63 -58.18 -0.33 -15.15 16 8 C 0.15 2.31 4.74 -4.04 -0.02 2.29 16 9 C -0.12 -1.50 3.73 -89.80 -0.34 -1.83 16 10 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 11 C -0.15 -1.74 7.54 -25.77 -0.19 -1.94 16 12 C 0.06 0.62 5.71 -25.77 -0.15 0.47 16 13 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 14 F -0.20 -2.58 17.38 2.25 0.04 -2.54 16 15 C -0.15 -1.53 7.53 -25.91 -0.20 -1.73 16 16 C 0.10 2.58 5.58 -106.65 -0.59 1.99 16 17 C -0.46 -11.94 8.49 -37.90 -0.32 -12.26 16 18 H 0.07 1.80 6.69 -52.48 -0.35 1.45 16 19 C 0.08 1.94 5.14 -17.33 -0.09 1.85 16 20 N -0.79 -20.91 10.99 55.55 0.61 -20.30 16 21 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.17 -4.67 8.60 -38.80 -0.33 -5.00 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 28 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 29 H 0.09 1.87 6.26 -52.49 -0.33 1.54 16 30 H 0.09 1.78 6.70 -52.49 -0.35 1.43 16 31 H 0.39 7.83 6.69 -40.82 -0.27 7.55 16 32 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 33 H 0.05 0.68 7.65 -51.93 -0.40 0.29 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 36 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.13 3.57 6.22 -52.49 -0.33 3.24 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -29.15 322.38 -8.15 -37.30 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.31 Total: 11.15 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -2.78 Total: -21.28 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.28 Total: -35.45 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.21 Total: -7.81 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.15 -8.15 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168238836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.902 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds