Wall clock time and date at job start Tue Mar 31 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35966 * 116.99607 * 2 1 4 4 C 1.39420 * 119.82067 * 359.97438 * 3 2 1 5 5 C 1.38101 * 120.56587 * 179.74056 * 4 3 2 6 6 C 1.38717 * 120.20084 * 0.55639 * 5 4 3 7 7 N 1.38854 * 120.18114 * 179.71644 * 6 5 4 8 8 C 1.46500 * 119.99685 * 359.72940 * 7 6 5 9 9 C 1.53002 * 109.47062 * 179.97438 * 8 7 6 10 10 H 1.08993 * 112.90726 * 316.24935 * 9 8 7 11 11 C 1.53785 * 113.61334 * 87.50267 * 9 8 7 12 12 C 1.54052 * 87.07811 * 139.97714 * 11 9 8 13 13 H 1.08996 * 113.69402 * 220.05653 * 12 11 9 14 14 F 1.39900 * 113.61111 * 89.07314 * 12 11 9 15 15 C 1.53783 * 113.61402 * 184.99945 * 9 8 7 16 16 C 1.41539 * 119.63766 * 359.45177 * 6 5 4 17 17 C 1.41030 * 120.27754 * 180.29904 * 16 6 5 18 18 H 1.08007 * 119.99726 * 334.24270 * 17 16 6 19 19 C 1.39899 * 120.00534 * 154.24567 * 17 16 6 20 20 N 1.30892 * 119.99651 * 342.94741 * 19 17 16 21 21 Si 1.86799 * 120.00396 * 162.95165 * 19 17 16 22 22 H 1.48494 * 109.47122 * 94.63739 * 21 19 17 23 23 H 1.48495 * 109.47132 * 214.64187 * 21 19 17 24 24 H 1.48500 * 109.46878 * 334.63831 * 21 19 17 25 25 C 1.37840 * 119.81991 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47517 * 299.99868 * 1 2 3 28 28 H 1.09000 * 109.47056 * 59.99901 * 1 2 3 29 29 H 1.07996 * 119.71572 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.89824 * 180.27741 * 5 4 3 31 31 H 0.96997 * 120.00099 * 179.72667 * 7 6 5 32 32 H 1.09002 * 109.47309 * 59.99829 * 8 7 6 33 33 H 1.09000 * 109.47399 * 299.99527 * 8 7 6 34 34 H 1.09000 * 113.61334 * 254.53334 * 11 9 8 35 35 H 1.09004 * 113.61284 * 25.34806 * 11 9 8 36 36 H 1.09000 * 113.61858 * 334.56734 * 15 9 8 37 37 H 1.08995 * 113.61323 * 105.38920 * 15 9 8 38 38 H 0.97001 * 120.00208 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.10444 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2831 2.3783 -0.0005 5 6 1.8940 3.6169 0.0048 6 6 3.2778 3.7125 -0.0008 7 7 3.8915 4.9581 -0.0013 8 6 3.0771 6.1759 -0.0019 9 6 3.9927 7.4017 -0.0018 10 1 4.8273 7.3078 0.6929 11 6 4.4111 7.8582 -1.4094 12 6 4.2271 9.3037 -0.9096 13 1 3.7639 9.9648 -1.6420 14 9 5.3805 9.8493 -0.3359 15 6 3.2366 8.7352 0.1204 16 6 4.0609 2.5335 -0.0003 17 6 5.4688 2.6150 0.0004 18 1 5.9594 3.4872 -0.4060 19 6 6.2301 1.5661 0.5272 20 7 5.6688 0.6782 1.3082 21 14 8.0474 1.4328 0.1164 22 1 8.8455 2.0874 1.1839 23 1 8.4294 0.0010 0.0201 24 1 8.3120 2.1040 -1.1815 25 6 3.4229 1.2794 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2052 2.3130 -0.0005 30 1 1.2924 4.5138 0.0089 31 1 4.8594 5.0219 -0.0013 32 1 2.4479 6.1926 0.8880 33 1 2.4481 6.1919 -0.8920 34 1 5.4426 7.6107 -1.6601 35 1 3.7055 7.5713 -2.1892 36 1 2.2093 8.6895 -0.2409 37 1 3.3188 9.1951 1.1052 38 1 6.1964 -0.0493 1.6732 39 1 4.0100 0.3729 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168238836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:11 Heat of formation + Delta-G solvation = -65.618109 kcal Electronic energy + Delta-G solvation = -21355.017578 eV Core-core repulsion = 17983.782038 eV Total energy + Delta-G solvation = -3371.235540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.62686 -40.46176 -39.49271 -38.30630 -35.67209 -34.68393 -31.58300 -30.30482 -28.43000 -27.04879 -26.83099 -26.48124 -24.05791 -22.43234 -21.64506 -20.46248 -19.40648 -18.10367 -17.63095 -17.11715 -16.80174 -16.55402 -16.35739 -16.24212 -15.98938 -15.69901 -15.20915 -14.89224 -14.42580 -14.22089 -13.71004 -13.58939 -13.44588 -13.31564 -13.10630 -12.97244 -12.75808 -12.58028 -12.27287 -12.14179 -11.91092 -11.79252 -11.71948 -11.22684 -11.11567 -11.02159 -10.91900 -9.97100 -9.30088 -8.58576 -7.73305 -6.08807 1.00540 1.34998 1.39076 1.50307 1.54803 2.23243 2.78589 2.91487 3.01235 3.33890 3.44542 3.70313 3.75860 3.82805 3.97836 4.36631 4.45384 4.51467 4.52125 4.56937 4.60485 4.75049 4.77364 4.79348 4.85106 5.01753 5.03432 5.11566 5.12274 5.17521 5.32012 5.49967 5.61783 5.77094 5.85965 6.03292 6.23238 6.40510 6.83273 6.99120 7.05836 7.28242 7.37650 8.43618 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005436 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.413810 B = 5149.289127 C = 7185.739559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.077 3.923 4 C -0.270 4.270 5 C -0.156 4.156 6 C 0.092 3.908 7 N -0.748 5.748 8 C 0.149 3.851 9 C -0.125 4.125 10 H 0.080 0.920 11 C -0.154 4.154 12 C 0.061 3.939 13 H 0.126 0.874 14 F -0.218 7.218 15 C -0.140 4.140 16 C 0.064 3.936 17 C -0.487 4.487 18 H 0.080 0.920 19 C 0.033 3.967 20 N -0.831 5.831 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.204 4.204 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.391 0.609 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.282 0.718 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 12.107 -3.866 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.033 3.967 4 C -0.291 4.291 5 C -0.180 4.180 6 C -0.009 4.009 7 N -0.383 5.383 8 C 0.025 3.975 9 C -0.144 4.144 10 H 0.099 0.901 11 C -0.192 4.192 12 C 0.025 3.975 13 H 0.144 0.856 14 F -0.199 7.199 15 C -0.178 4.178 16 C 0.060 3.940 17 C -0.517 4.517 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.457 5.457 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.226 4.226 26 H 0.130 0.870 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.225 0.775 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.605 11.866 -3.704 13.636 hybrid contribution 1.129 -0.491 0.261 1.258 sum -4.477 11.375 -3.443 12.700 Atomic orbital electron populations 1.23066 0.78105 1.04161 1.01212 1.85952 1.22349 1.28565 1.90345 1.18903 0.92095 0.83846 1.01877 1.20526 0.98355 0.91535 1.18659 1.20104 0.92031 0.96785 1.09073 1.18024 0.91675 0.85916 1.05254 1.44046 1.07620 1.01550 1.85036 1.21161 0.93272 0.82882 1.00180 1.22756 0.99001 0.94324 0.98315 0.90142 1.23714 1.03329 0.94716 0.97435 1.22650 0.83041 0.95052 0.96771 0.85620 1.92771 1.52993 1.87354 1.86751 1.23536 1.00006 0.93822 1.00400 1.17308 0.93627 0.89538 0.93560 1.19381 0.91245 1.04209 1.36853 0.90212 1.26662 1.05134 0.94133 0.92181 1.69963 1.40018 1.12475 1.23285 0.85299 0.76850 0.78405 0.79781 1.18935 1.19776 1.18077 1.20240 0.90518 0.98006 1.13832 0.86966 0.93101 0.92651 0.85949 0.86084 0.77452 0.93693 0.92343 0.91473 0.86860 0.85821 0.90068 0.90724 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.81 113.37 1.11 2.05 16 2 O -0.36 -16.44 10.49 -93.17 -0.98 -17.42 16 3 C 0.08 3.93 6.67 22.46 0.15 4.08 16 4 C -0.27 -12.06 9.03 22.52 0.20 -11.86 16 5 C -0.16 -6.80 9.28 22.35 0.21 -6.60 16 6 C 0.09 4.35 6.68 38.96 0.26 4.61 16 7 N -0.75 -29.35 5.63 -337.97 -1.90 -31.26 16 8 C 0.15 4.32 4.74 86.38 0.41 4.73 16 9 C -0.13 -2.95 3.73 -10.26 -0.04 -2.99 16 10 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 11 C -0.15 -3.17 7.54 31.21 0.24 -2.93 16 12 C 0.06 1.07 5.71 31.22 0.18 1.25 16 13 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 14 F -0.22 -5.26 17.38 44.97 0.78 -4.48 16 15 C -0.14 -2.37 7.53 31.12 0.23 -2.14 16 16 C 0.06 3.52 5.58 -21.18 -0.12 3.40 16 17 C -0.49 -26.06 8.49 23.36 0.20 -25.86 16 18 H 0.08 4.00 6.69 -2.91 -0.02 3.98 16 19 C 0.03 1.70 5.14 85.24 0.44 2.14 16 20 N -0.83 -45.99 10.99 21.82 0.24 -45.75 16 21 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 C -0.20 -11.60 8.60 22.78 0.20 -11.41 16 26 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 28 H 0.05 1.61 7.65 -2.39 -0.02 1.59 16 29 H 0.12 4.61 6.26 -2.91 -0.02 4.59 16 30 H 0.12 4.43 6.70 -2.91 -0.02 4.41 16 31 H 0.39 15.71 6.69 -92.71 -0.62 15.09 16 32 H 0.04 1.32 7.93 -2.39 -0.02 1.30 16 33 H 0.06 1.57 7.65 -2.39 -0.02 1.55 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 2.03 7.90 -2.39 -0.02 2.01 16 36 H 0.12 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 39 H 0.10 5.84 6.22 -2.91 -0.02 5.83 16 Total: -1.00 -65.98 322.38 4.28 -61.69 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.45 Total: 37.12 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.67 Total: -41.54 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.66 Total: -77.01 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.98 Total: -17.42 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -65.98 4.28 -61.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168238836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.923 kcal (2) G-P(sol) polarization free energy of solvation -65.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds