Wall clock time and date at job start Tue Mar 31 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45208 * 109.46871 * 2 1 4 4 C 1.34731 * 116.99868 * 180.02562 * 3 2 1 5 5 O 1.21479 * 119.99851 * 359.97438 * 4 3 2 6 6 C 1.47593 * 119.99786 * 179.97438 * 4 3 2 7 7 C 1.40132 * 121.19527 * 5.56695 * 6 4 3 8 8 C 1.38460 * 117.90166 * 180.02562 * 7 6 4 9 9 N 1.31894 * 120.19189 * 0.02562 * 8 7 6 10 10 N 1.28264 * 122.67745 * 359.97438 * 9 8 7 11 11 C 1.32703 * 122.18751 * 359.97438 * 10 9 8 12 12 N 1.38256 * 120.28551 * 180.02562 * 11 10 9 13 13 C 1.46508 * 120.00320 * 354.57071 * 12 11 10 14 14 C 1.52998 * 109.47074 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46696 * 180.02562 * 14 13 12 16 16 C 1.50709 * 109.46973 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99883 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99982 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46988 * 89.99720 * 20 18 16 22 22 H 1.48500 * 109.46995 * 209.99672 * 20 18 16 23 23 H 1.48494 * 109.47300 * 330.00055 * 20 18 16 24 24 H 1.08999 * 109.47234 * 60.00397 * 1 2 3 25 25 H 1.09002 * 109.46674 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47134 * 299.99958 * 1 2 3 27 27 H 1.09001 * 109.47526 * 239.99849 * 2 1 3 28 28 H 1.09008 * 109.47115 * 119.99338 * 2 1 3 29 29 H 1.07998 * 121.04448 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.90303 * 180.02562 * 8 7 6 31 31 H 0.97005 * 120.00247 * 174.57797 * 12 11 10 32 32 H 1.08990 * 109.47085 * 300.00395 * 13 12 11 33 33 H 1.09000 * 109.46444 * 60.00508 * 13 12 11 34 34 H 1.08998 * 109.47333 * 299.99926 * 14 13 12 35 35 H 1.09000 * 109.47064 * 60.00894 * 14 13 12 36 36 H 1.09003 * 109.47709 * 300.00087 * 15 14 13 37 37 H 1.09000 * 109.47227 * 60.00837 * 15 14 13 38 38 H 0.96993 * 120.00029 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3497 1.5456 -0.0005 5 8 4.0897 0.5822 -0.0005 6 6 3.9137 2.9095 -0.0011 7 6 3.0887 4.0362 0.1151 8 6 3.6900 5.2834 0.1063 9 7 4.9998 5.3874 -0.0094 10 7 5.7688 4.3664 -0.1167 11 6 5.2995 3.1251 -0.1186 12 7 6.1645 2.0530 -0.2360 13 6 7.5906 2.2853 -0.4782 14 6 8.3185 0.9424 -0.5656 15 6 9.8079 1.1851 -0.8179 16 6 10.5248 -0.1377 -0.9047 17 1 9.9732 -1.0593 -0.7916 18 6 11.8847 -0.1714 -1.1294 19 7 12.5102 -1.3257 -1.2056 20 14 12.8387 1.4227 -1.3256 21 1 13.3204 1.8780 0.0032 22 1 14.0004 1.1971 -2.2227 23 1 11.9536 2.4601 -1.9133 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 2.0174 3.9349 0.2078 30 1 3.0849 6.1735 0.1943 31 1 5.8272 1.1468 -0.1582 32 1 7.7163 2.8288 -1.4145 33 1 8.0074 2.8713 0.3409 34 1 8.1928 0.3993 0.3710 35 1 7.9018 0.3559 -1.3845 36 1 9.9340 1.7284 -1.7544 37 1 10.2243 1.7713 0.0012 38 1 13.4669 -1.3494 -1.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:57 Heat of formation + Delta-G solvation = -33.041489 kcal Electronic energy + Delta-G solvation = -20892.799897 eV Core-core repulsion = 17542.896947 eV Total energy + Delta-G solvation = -3349.902950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48765 -40.26832 -37.44213 -36.46234 -33.98142 -33.60291 -32.08876 -31.97432 -30.35175 -27.06181 -26.25998 -24.12562 -23.39667 -22.47917 -21.71057 -20.27903 -18.62457 -17.73389 -17.53839 -17.11852 -16.98211 -16.59699 -15.54988 -15.08003 -14.78737 -14.63117 -14.33552 -14.30059 -13.95805 -13.45495 -13.20460 -12.66644 -12.51562 -12.41727 -12.03860 -11.92991 -11.49505 -11.16000 -11.09600 -10.99356 -10.95881 -10.68222 -10.49691 -10.03046 -9.83124 -9.74503 -9.68676 -9.20799 -8.53553 -8.11832 -6.04069 -4.02786 0.06336 1.03232 2.11176 2.16227 3.07675 3.33277 3.40562 3.45037 3.50105 4.02436 4.11697 4.36400 4.46415 4.52410 4.55575 4.59351 4.73819 4.86912 5.19837 5.28201 5.29856 5.34809 5.43509 5.49898 5.56585 5.64847 5.86665 5.95670 6.02486 6.44381 6.45327 6.78698 7.01101 7.23635 7.25117 7.38064 7.63235 7.77933 8.52993 8.68969 9.00162 9.57926 11.09278 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.003586 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.256636 B = 7806.731418 C = 9174.917015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.526 3.474 5 O -0.503 6.503 6 C -0.212 4.212 7 C -0.007 4.007 8 C -0.050 4.050 9 N -0.165 5.165 10 N -0.299 5.299 11 C 0.393 3.607 12 N -0.679 5.679 13 C 0.112 3.888 14 C -0.114 4.114 15 C -0.009 4.009 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.425 0.575 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.811 8.919 3.032 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.371 3.629 5 O -0.391 6.391 6 C -0.230 4.230 7 C -0.036 4.036 8 C -0.216 4.216 9 N -0.011 5.011 10 N -0.156 5.156 11 C 0.147 3.853 12 N -0.316 5.316 13 C -0.011 4.011 14 C -0.152 4.152 15 C -0.047 4.047 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.177 0.823 30 H 0.192 0.808 31 H 0.273 0.727 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.918 9.359 2.877 26.772 hybrid contribution -0.794 -0.718 0.019 1.070 sum -25.711 8.641 2.896 27.279 Atomic orbital electron populations 1.21818 0.92275 1.03270 1.03576 1.23148 0.95485 0.79353 1.03245 1.86508 1.22961 1.33113 1.84144 1.20640 0.80935 0.88729 0.72571 1.90628 1.59535 1.42220 1.46746 1.19568 0.93159 0.92156 1.18099 1.22557 1.01615 0.91462 0.87977 1.23897 0.93434 0.98049 1.06229 1.72607 1.04371 1.22550 1.01567 1.73405 1.28114 0.93832 1.20224 1.20123 0.86663 0.90768 0.87746 1.45744 1.08239 1.07095 1.70505 1.21868 0.77539 0.99985 1.01690 1.21715 0.97857 0.93765 1.01902 1.19495 0.90553 0.98087 0.96577 1.21105 0.93138 0.92321 1.49438 0.91021 1.25030 0.97725 0.96164 0.94572 1.69912 1.09579 1.24705 1.50056 0.86766 0.79652 0.84405 0.78435 1.20214 1.21393 1.18817 0.91361 0.89935 0.91388 0.90710 0.90743 0.82296 0.80778 0.72714 0.91293 0.91025 0.92033 0.92055 0.96221 0.96604 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.47 6.20 37.16 0.23 0.70 16 3 O -0.35 -3.36 9.63 -40.58 -0.39 -3.75 16 4 C 0.53 6.39 7.90 34.55 0.27 6.67 16 5 O -0.50 -7.30 13.60 -19.25 -0.26 -7.57 16 6 C -0.21 -2.59 5.93 -104.43 -0.62 -3.21 16 7 C -0.01 -0.06 9.79 -38.79 -0.38 -0.44 16 8 C -0.05 -0.47 11.29 -17.44 -0.20 -0.67 16 9 N -0.16 -2.25 11.47 30.51 0.35 -1.90 16 10 N -0.30 -4.72 10.75 31.37 0.34 -4.38 16 11 C 0.39 5.89 7.57 -154.87 -1.17 4.72 16 12 N -0.68 -10.88 5.59 -60.10 -0.34 -11.22 16 13 C 0.11 1.94 5.71 -4.04 -0.02 1.92 16 14 C -0.11 -2.28 5.27 -26.73 -0.14 -2.42 16 15 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 16 C -0.52 -15.06 9.66 -34.43 -0.33 -15.40 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 20 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.16 0.85 7.77 -52.49 -0.41 0.44 16 30 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.42 6.83 5.14 -40.82 -0.21 6.62 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -33.43 327.64 -6.65 -40.07 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.20 Total: 0.87 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.19 Total: -6.96 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 1.13 Total: -44.93 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.65 Total: -11.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.43 -6.65 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds