Wall clock time and date at job start Tue Mar 31 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45208 * 109.46871 * 2 1 4 4 C 1.34731 * 116.99868 * 180.02562 * 3 2 1 5 5 O 1.21479 * 119.99851 * 359.97438 * 4 3 2 6 6 C 1.47593 * 119.99786 * 179.97438 * 4 3 2 7 7 C 1.40132 * 121.19527 * 5.56695 * 6 4 3 8 8 C 1.38460 * 117.90166 * 180.02562 * 7 6 4 9 9 N 1.31894 * 120.19189 * 0.02562 * 8 7 6 10 10 N 1.28264 * 122.67745 * 359.97438 * 9 8 7 11 11 C 1.32703 * 122.18751 * 359.97438 * 10 9 8 12 12 N 1.38256 * 120.28551 * 180.02562 * 11 10 9 13 13 C 1.46508 * 120.00320 * 354.57071 * 12 11 10 14 14 C 1.52998 * 109.47074 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46696 * 180.02562 * 14 13 12 16 16 C 1.50709 * 109.46973 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99883 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99982 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46988 * 89.99720 * 20 18 16 22 22 H 1.48500 * 109.46995 * 209.99672 * 20 18 16 23 23 H 1.48494 * 109.47300 * 330.00055 * 20 18 16 24 24 H 1.08999 * 109.47234 * 60.00397 * 1 2 3 25 25 H 1.09002 * 109.46674 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47134 * 299.99958 * 1 2 3 27 27 H 1.09001 * 109.47526 * 239.99849 * 2 1 3 28 28 H 1.09008 * 109.47115 * 119.99338 * 2 1 3 29 29 H 1.07998 * 121.04448 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.90303 * 180.02562 * 8 7 6 31 31 H 0.97005 * 120.00247 * 174.57797 * 12 11 10 32 32 H 1.08990 * 109.47085 * 300.00395 * 13 12 11 33 33 H 1.09000 * 109.46444 * 60.00508 * 13 12 11 34 34 H 1.08998 * 109.47333 * 299.99926 * 14 13 12 35 35 H 1.09000 * 109.47064 * 60.00894 * 14 13 12 36 36 H 1.09003 * 109.47709 * 300.00087 * 15 14 13 37 37 H 1.09000 * 109.47227 * 60.00837 * 15 14 13 38 38 H 0.96993 * 120.00029 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3497 1.5456 -0.0005 5 8 4.0897 0.5822 -0.0005 6 6 3.9137 2.9095 -0.0011 7 6 3.0887 4.0362 0.1151 8 6 3.6900 5.2834 0.1063 9 7 4.9998 5.3874 -0.0094 10 7 5.7688 4.3664 -0.1167 11 6 5.2995 3.1251 -0.1186 12 7 6.1645 2.0530 -0.2360 13 6 7.5906 2.2853 -0.4782 14 6 8.3185 0.9424 -0.5656 15 6 9.8079 1.1851 -0.8179 16 6 10.5248 -0.1377 -0.9047 17 1 9.9732 -1.0593 -0.7916 18 6 11.8847 -0.1714 -1.1294 19 7 12.5102 -1.3257 -1.2056 20 14 12.8387 1.4227 -1.3256 21 1 13.3204 1.8780 0.0032 22 1 14.0004 1.1971 -2.2227 23 1 11.9536 2.4601 -1.9133 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 2.0174 3.9349 0.2078 30 1 3.0849 6.1735 0.1943 31 1 5.8272 1.1468 -0.1582 32 1 7.7163 2.8288 -1.4145 33 1 8.0074 2.8713 0.3409 34 1 8.1928 0.3993 0.3710 35 1 7.9018 0.3559 -1.3845 36 1 9.9340 1.7284 -1.7544 37 1 10.2243 1.7713 0.0012 38 1 13.4669 -1.3494 -1.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:57 Heat of formation + Delta-G solvation = -55.009069 kcal Electronic energy + Delta-G solvation = -20893.752482 eV Core-core repulsion = 17542.896947 eV Total energy + Delta-G solvation = -3350.855536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.42088 -41.16116 -38.45322 -37.58431 -35.68827 -34.57855 -33.87387 -32.56100 -31.68690 -28.73837 -27.14794 -25.41935 -24.13011 -23.75288 -22.72871 -21.97555 -19.50206 -19.00735 -18.63742 -18.57056 -17.89902 -17.76685 -16.72222 -16.39470 -15.89461 -15.84677 -15.70150 -15.11523 -15.10005 -14.74661 -14.27088 -14.06357 -13.81313 -13.64583 -13.04395 -12.87435 -12.83305 -12.56080 -12.36128 -12.14250 -12.01512 -11.80561 -11.71670 -11.63333 -11.52920 -11.37167 -11.33685 -10.78216 -10.68151 -9.23863 -8.31306 -6.36283 -0.81962 0.13796 1.22259 1.32734 1.36961 1.38406 1.51143 1.97455 2.35756 2.58102 3.04111 3.12035 3.29708 3.47745 3.84850 3.92349 3.99327 4.01589 4.05607 4.13097 4.33195 4.44186 4.51493 4.60968 4.77689 4.83321 4.85346 4.93459 4.97168 5.05537 5.18517 5.31396 5.38623 5.50292 5.60769 5.85228 6.24641 6.29807 6.54292 6.71221 7.28442 7.74793 8.85564 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.003586 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.256636 B = 7806.731418 C = 9174.917015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.340 6.340 4 C 0.528 3.472 5 O -0.533 6.533 6 C -0.221 4.221 7 C 0.019 3.981 8 C -0.027 4.027 9 N -0.201 5.201 10 N -0.337 5.337 11 C 0.375 3.625 12 N -0.694 5.694 13 C 0.131 3.869 14 C -0.103 4.103 15 C -0.007 4.007 16 C -0.536 4.536 17 H 0.031 0.969 18 C 0.004 3.996 19 N -0.952 5.952 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.244 1.244 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.205 0.795 30 H 0.223 0.777 31 H 0.422 0.578 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.514 11.654 3.242 31.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.255 6.255 4 C 0.374 3.626 5 O -0.424 6.424 6 C -0.238 4.238 7 C -0.010 4.010 8 C -0.196 4.196 9 N -0.044 5.044 10 N -0.192 5.192 11 C 0.130 3.870 12 N -0.333 5.333 13 C 0.007 3.993 14 C -0.141 4.141 15 C -0.045 4.045 16 C -0.574 4.574 17 H 0.049 0.951 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.168 1.168 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.222 0.778 30 H 0.239 0.761 31 H 0.270 0.730 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -27.656 12.143 3.092 30.363 hybrid contribution -0.217 -1.603 -0.011 1.617 sum -27.873 10.541 3.081 29.959 Atomic orbital electron populations 1.21832 0.89661 1.04526 1.04151 1.23433 0.97431 0.78343 1.02890 1.86505 1.21255 1.34318 1.83458 1.20717 0.81581 0.88418 0.71843 1.90617 1.60386 1.43182 1.48191 1.19740 0.92520 0.93363 1.18183 1.23102 1.03336 0.89863 0.84741 1.24711 0.92316 1.00006 1.02520 1.72527 1.06403 1.22135 1.03318 1.73321 1.29661 0.94308 1.21939 1.20265 0.87643 0.90410 0.88706 1.45498 1.07593 1.07460 1.72720 1.21447 0.78648 0.97633 1.01545 1.21485 0.95913 0.95425 1.01268 1.19427 0.92509 0.95451 0.97078 1.21459 0.93636 0.93140 1.49142 0.95090 1.26042 0.98921 1.00219 0.94117 1.70066 1.10182 1.27482 1.51504 0.85623 0.78142 0.79698 0.79011 1.19030 1.20872 1.16777 0.90853 0.88368 0.90661 0.91298 0.91068 0.77800 0.76107 0.73042 0.91469 0.91249 0.92665 0.92704 0.95592 0.95690 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 10.29 71.98 0.74 -0.27 16 2 C 0.05 0.72 6.20 71.98 0.45 1.17 16 3 O -0.34 -5.76 9.63 -56.41 -0.54 -6.30 16 4 C 0.53 12.26 7.90 70.29 0.56 12.82 16 5 O -0.53 -15.68 13.60 19.90 0.27 -15.41 16 6 C -0.22 -5.02 5.93 -19.74 -0.12 -5.13 16 7 C 0.02 0.26 9.79 22.78 0.22 0.48 16 8 C -0.03 -0.41 11.29 84.74 0.96 0.55 16 9 N -0.20 -5.12 11.47 -57.38 -0.66 -5.77 16 10 N -0.34 -10.50 10.75 -54.66 -0.59 -11.08 16 11 C 0.37 11.12 7.57 133.62 1.01 12.14 16 12 N -0.69 -22.72 5.59 -344.06 -1.92 -24.64 16 13 C 0.13 4.61 5.71 86.38 0.49 5.10 16 14 C -0.10 -4.23 5.27 30.59 0.16 -4.07 16 15 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 16 C -0.54 -31.92 9.66 25.60 0.25 -31.67 16 17 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 18 C 0.00 0.22 5.47 84.66 0.46 0.69 16 19 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 20 Si 0.95 45.33 27.47 68.60 1.88 47.21 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 24 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.21 0.93 7.77 -2.91 -0.02 0.91 16 30 H 0.22 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.42 14.09 5.14 -92.70 -0.48 13.61 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 37 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -76.15 327.64 4.58 -71.56 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.54 Total: 13.65 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.30 Total: -8.40 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -2.87 Total: -102.32 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.27 Total: -21.71 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -76.15 4.58 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.553 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds