Wall clock time and date at job start Tue Mar 31 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34684 * 116.99852 * 179.97438 * 3 2 1 5 5 O 1.21427 * 120.00132 * 0.02562 * 4 3 2 6 6 C 1.48103 * 119.99717 * 179.97438 * 4 3 2 7 7 N 1.32605 * 119.09047 * 359.72749 * 6 4 3 8 8 C 1.31879 * 120.86057 * 179.75652 * 7 6 4 9 9 C 1.39698 * 119.05557 * 0.50821 * 8 7 6 10 10 N 1.39046 * 120.83198 * 179.72510 * 9 8 7 11 11 C 1.46500 * 119.99735 * 0.02562 * 10 9 8 12 12 C 1.52992 * 109.47445 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47555 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46931 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00571 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99688 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00323 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99862 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47212 * 89.99921 * 18 16 14 20 20 H 1.48510 * 109.47062 * 209.99919 * 18 16 14 21 21 H 1.48499 * 109.47479 * 329.99612 * 18 16 14 22 22 C 1.39704 * 118.34103 * 359.74934 * 9 8 7 23 23 N 1.31871 * 119.06103 * 0.02562 * 22 9 8 24 24 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 29 29 H 1.07994 * 120.47214 * 180.25953 * 8 7 6 30 30 H 0.96993 * 120.00599 * 180.02562 * 10 9 8 31 31 H 1.09003 * 109.47409 * 300.00189 * 11 10 9 32 32 H 1.09003 * 109.46775 * 60.00005 * 11 10 9 33 33 H 1.09003 * 109.47058 * 300.00510 * 12 11 10 34 34 H 1.08995 * 109.47197 * 60.00001 * 12 11 10 35 35 H 1.08998 * 109.46620 * 299.99852 * 13 12 11 36 36 H 1.08995 * 109.47230 * 59.99576 * 13 12 11 37 37 H 0.96996 * 120.00392 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.46806 * 179.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3491 1.5456 0.0005 5 8 4.0889 0.5826 0.0005 6 6 3.9151 2.9142 0.0000 7 7 3.0907 3.9528 -0.0065 8 6 3.5567 5.1865 -0.0024 9 6 4.9389 5.3896 -0.0019 10 7 5.4703 6.6745 -0.0033 11 6 4.5779 7.8362 -0.0049 12 6 5.4110 9.1194 -0.0056 13 6 4.4789 10.3328 -0.0066 14 6 5.2997 11.5966 -0.0080 15 1 6.3781 11.5402 -0.0077 16 6 4.6737 12.8251 -0.0096 17 7 5.3898 13.9282 -0.0103 18 14 2.8082 12.9228 -0.0108 19 1 2.3131 12.9500 1.3889 20 1 2.3777 14.1589 -0.7124 21 1 2.2509 11.7372 -0.7100 22 6 5.7738 4.2695 -0.0003 23 7 5.2324 3.0670 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.8796 6.0277 -0.0036 30 1 6.4319 6.8017 -0.0033 31 1 3.9491 7.8103 -0.8950 32 1 3.9489 7.8124 0.8851 33 1 6.0394 9.1451 0.8846 34 1 6.0403 9.1435 -0.8953 35 1 3.8503 10.3072 -0.8967 36 1 3.8499 10.3085 0.8832 37 1 4.9494 14.7924 -0.0118 38 1 6.8475 4.3868 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:22 Heat of formation + Delta-G solvation = -44.036203 kcal Electronic energy + Delta-G solvation = -20197.514626 eV Core-core repulsion = 16847.134910 eV Total energy + Delta-G solvation = -3350.379717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41350 -40.16043 -37.28103 -36.67108 -34.15564 -33.92882 -32.23794 -31.90502 -30.16584 -27.44843 -25.12094 -25.07001 -23.41619 -22.52533 -21.52345 -20.57594 -18.85559 -17.98675 -17.12541 -17.04194 -16.84271 -16.74804 -15.56189 -15.30787 -14.91857 -14.89666 -14.19647 -14.03214 -13.69381 -13.59351 -13.07246 -12.85882 -12.76333 -12.23946 -12.17976 -11.91309 -11.77372 -11.31932 -11.25985 -11.13052 -10.79262 -10.77749 -10.75689 -10.20638 -10.02133 -9.85835 -9.44992 -9.37170 -8.67003 -7.99617 -6.16933 -4.17029 0.39090 0.89900 2.13367 2.21663 3.00520 3.21644 3.30298 3.31028 3.67722 3.84751 4.13572 4.22763 4.33253 4.51881 4.64621 4.67958 4.80465 4.97347 5.14026 5.15858 5.28558 5.35351 5.47458 5.48689 5.64779 5.67457 5.84024 6.13593 6.17126 6.17570 6.55157 6.57032 6.84044 7.03712 7.17405 7.22843 7.44080 7.62763 7.88630 8.37774 8.86262 9.44201 10.96159 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.002621 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.558537 B =10679.471289 C =11560.676289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.336 6.336 4 C 0.548 3.452 5 O -0.486 6.486 6 C 0.196 3.804 7 N -0.420 5.420 8 C 0.060 3.940 9 C 0.160 3.840 10 N -0.704 5.704 11 C 0.104 3.896 12 C -0.113 4.113 13 C -0.010 4.010 14 C -0.526 4.526 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.062 3.938 23 N -0.417 5.417 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.176 0.824 30 H 0.410 0.590 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -23.036 0.006 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.251 6.251 4 C 0.389 3.611 5 O -0.371 6.371 6 C -0.070 4.070 7 N -0.135 5.135 8 C -0.115 4.115 9 C 0.043 3.957 10 N -0.327 5.327 11 C -0.019 4.019 12 C -0.151 4.151 13 C -0.048 4.048 14 C -0.564 4.564 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.538 5.538 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.114 4.114 23 N -0.132 5.132 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.193 0.807 30 H 0.246 0.754 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.510 -23.981 -0.004 24.848 hybrid contribution -0.103 1.161 0.020 1.166 sum -6.613 -22.820 0.017 23.758 Atomic orbital electron populations 1.21799 0.92334 1.02898 1.03849 1.23105 0.95573 0.79866 1.02709 1.86645 1.22599 1.32096 1.83755 1.19770 0.80906 0.87100 0.73349 1.90846 1.60599 1.40956 1.44651 1.20647 0.86117 0.91066 1.09193 1.68100 1.39804 0.98897 1.06691 1.22921 0.91598 0.94704 1.02284 1.20106 0.95650 0.87980 0.91963 1.45034 1.10120 1.01911 1.75632 1.21976 0.93542 0.84597 1.01750 1.21696 0.98980 0.92273 1.02187 1.19500 0.95418 0.93191 0.96686 1.21051 0.94874 0.88879 1.51619 0.91002 1.25044 0.98361 0.95704 0.94372 1.69901 1.35737 0.97715 1.50495 0.86766 0.86036 0.77808 0.78584 1.20208 1.21296 1.18948 1.22800 1.00529 0.85162 1.02866 1.67755 1.12462 1.25885 1.07080 0.91298 0.91292 0.90182 0.91073 0.91073 0.80682 0.75400 0.91315 0.91326 0.91806 0.91779 0.96252 0.96680 0.92566 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.34 -4.20 10.01 -40.45 -0.40 -4.61 16 4 C 0.55 7.93 7.98 34.78 0.28 8.20 16 5 O -0.49 -7.81 16.65 -19.21 -0.32 -8.13 16 6 C 0.20 2.84 7.58 -157.01 -1.19 1.65 16 7 N -0.42 -5.74 10.14 -11.01 -0.11 -5.85 16 8 C 0.06 0.70 10.58 -16.99 -0.18 0.52 16 9 C 0.16 1.72 6.70 -83.50 -0.56 1.16 16 10 N -0.70 -6.97 5.72 -58.38 -0.33 -7.31 16 11 C 0.10 1.24 4.94 -4.05 -0.02 1.22 16 12 C -0.11 -1.78 5.27 -26.73 -0.14 -1.92 16 13 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 14 C -0.53 -13.93 9.66 -34.44 -0.33 -14.27 16 15 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 16 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 18 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 22 C 0.06 0.67 11.20 -16.99 -0.19 0.48 16 23 N -0.42 -5.82 10.11 -11.01 -0.11 -5.93 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.18 1.72 6.89 -52.49 -0.36 1.36 16 30 H 0.41 3.39 8.50 -40.82 -0.35 3.04 16 31 H 0.07 0.79 7.99 -51.93 -0.41 0.38 16 32 H 0.07 0.79 7.99 -51.93 -0.42 0.37 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -32.43 332.20 -7.38 -39.80 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.27 Total: -1.58 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.93 Total: -1.31 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.22 Total: -44.98 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.72 Total: -12.74 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.43 -7.38 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.232 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds