Wall clock time and date at job start Tue Mar 31 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34684 * 116.99852 * 179.97438 * 3 2 1 5 5 O 1.21427 * 120.00132 * 0.02562 * 4 3 2 6 6 C 1.48103 * 119.99717 * 179.97438 * 4 3 2 7 7 N 1.32605 * 119.09047 * 359.72749 * 6 4 3 8 8 C 1.31879 * 120.86057 * 179.75652 * 7 6 4 9 9 C 1.39698 * 119.05557 * 0.50821 * 8 7 6 10 10 N 1.39046 * 120.83198 * 179.72510 * 9 8 7 11 11 C 1.46500 * 119.99735 * 0.02562 * 10 9 8 12 12 C 1.52992 * 109.47445 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47555 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46931 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00571 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99688 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00323 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99862 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47212 * 89.99921 * 18 16 14 20 20 H 1.48510 * 109.47062 * 209.99919 * 18 16 14 21 21 H 1.48499 * 109.47479 * 329.99612 * 18 16 14 22 22 C 1.39704 * 118.34103 * 359.74934 * 9 8 7 23 23 N 1.31871 * 119.06103 * 0.02562 * 22 9 8 24 24 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 29 29 H 1.07994 * 120.47214 * 180.25953 * 8 7 6 30 30 H 0.96993 * 120.00599 * 180.02562 * 10 9 8 31 31 H 1.09003 * 109.47409 * 300.00189 * 11 10 9 32 32 H 1.09003 * 109.46775 * 60.00005 * 11 10 9 33 33 H 1.09003 * 109.47058 * 300.00510 * 12 11 10 34 34 H 1.08995 * 109.47197 * 60.00001 * 12 11 10 35 35 H 1.08998 * 109.46620 * 299.99852 * 13 12 11 36 36 H 1.08995 * 109.47230 * 59.99576 * 13 12 11 37 37 H 0.96996 * 120.00392 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.46806 * 179.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3491 1.5456 0.0005 5 8 4.0889 0.5826 0.0005 6 6 3.9151 2.9142 0.0000 7 7 3.0907 3.9528 -0.0065 8 6 3.5567 5.1865 -0.0024 9 6 4.9389 5.3896 -0.0019 10 7 5.4703 6.6745 -0.0033 11 6 4.5779 7.8362 -0.0049 12 6 5.4110 9.1194 -0.0056 13 6 4.4789 10.3328 -0.0066 14 6 5.2997 11.5966 -0.0080 15 1 6.3781 11.5402 -0.0077 16 6 4.6737 12.8251 -0.0096 17 7 5.3898 13.9282 -0.0103 18 14 2.8082 12.9228 -0.0108 19 1 2.3131 12.9500 1.3889 20 1 2.3777 14.1589 -0.7124 21 1 2.2509 11.7372 -0.7100 22 6 5.7738 4.2695 -0.0003 23 7 5.2324 3.0670 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.8796 6.0277 -0.0036 30 1 6.4319 6.8017 -0.0033 31 1 3.9491 7.8103 -0.8950 32 1 3.9489 7.8124 0.8851 33 1 6.0394 9.1451 0.8846 34 1 6.0403 9.1435 -0.8953 35 1 3.8503 10.3072 -0.8967 36 1 3.8499 10.3085 0.8832 37 1 4.9494 14.7924 -0.0118 38 1 6.8475 4.3868 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:22 Heat of formation + Delta-G solvation = -65.786795 kcal Electronic energy + Delta-G solvation = -20198.457803 eV Core-core repulsion = 16847.134910 eV Total energy + Delta-G solvation = -3351.322893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34565 -41.13004 -38.26351 -37.67390 -35.68542 -34.91076 -33.84656 -32.68082 -31.30474 -28.81936 -26.27297 -25.96980 -24.43218 -23.55760 -22.46473 -22.04995 -19.79885 -19.11841 -18.66460 -18.06909 -17.89928 -17.76146 -16.55236 -16.38475 -16.14420 -15.90865 -15.59998 -14.92801 -14.76721 -14.54392 -14.50140 -14.03402 -13.77127 -13.60932 -12.96553 -12.90633 -12.82928 -12.67837 -12.50438 -12.10480 -12.05618 -11.85314 -11.75401 -11.65503 -11.54596 -11.38178 -11.29459 -10.73898 -10.38424 -8.85144 -8.26953 -6.31532 -0.57439 0.03795 1.21593 1.25531 1.40684 1.42507 1.53261 2.10174 2.38914 2.73530 2.95252 3.09545 3.26805 3.43939 3.65756 3.91871 4.01484 4.06719 4.08116 4.23392 4.34230 4.53235 4.66141 4.75232 4.85132 4.91979 4.94007 5.05567 5.06131 5.10350 5.35195 5.49431 5.60380 5.63606 5.70205 5.95176 6.29522 6.43429 6.47931 6.78363 6.94382 7.33593 8.89596 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.002621 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.558537 B =10679.471289 C =11560.676289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.342 6.342 4 C 0.547 3.453 5 O -0.514 6.514 6 C 0.170 3.830 7 N -0.432 5.432 8 C 0.052 3.948 9 C 0.173 3.827 10 N -0.690 5.690 11 C 0.115 3.885 12 C -0.104 4.104 13 C -0.012 4.012 14 C -0.532 4.532 15 H 0.032 0.968 16 C -0.002 4.002 17 N -0.954 5.954 18 Si 0.951 3.049 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.237 1.237 22 C 0.065 3.935 23 N -0.441 5.441 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.196 0.804 30 H 0.420 0.580 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.830 -24.058 0.001 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.257 6.257 4 C 0.389 3.611 5 O -0.401 6.401 6 C -0.095 4.095 7 N -0.147 5.147 8 C -0.122 4.122 9 C 0.054 3.946 10 N -0.314 5.314 11 C -0.009 4.009 12 C -0.142 4.142 13 C -0.050 4.050 14 C -0.570 4.570 15 H 0.050 0.950 16 C -0.198 4.198 17 N -0.595 5.595 18 Si 0.774 3.226 19 H -0.193 1.193 20 H -0.218 1.218 21 H -0.160 1.160 22 C -0.110 4.110 23 N -0.156 5.156 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.213 0.787 30 H 0.258 0.742 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.205 -25.029 -0.010 26.339 hybrid contribution 0.542 1.546 0.025 1.638 sum -7.663 -23.483 0.015 24.702 Atomic orbital electron populations 1.21827 0.90104 1.04538 1.03721 1.23454 0.97277 0.78440 1.03034 1.86645 1.21626 1.34166 1.83230 1.19964 0.81314 0.87141 0.72693 1.90810 1.61234 1.41757 1.46291 1.20679 0.86582 0.91261 1.10974 1.68083 1.40018 0.99434 1.07203 1.23297 0.92444 0.94586 1.01919 1.20034 0.95391 0.88004 0.91123 1.44849 1.10550 1.01147 1.74848 1.21749 0.92990 0.83091 1.03040 1.21460 0.98392 0.92360 1.02012 1.19473 0.95736 0.92495 0.97316 1.21524 0.93870 0.91531 1.50110 0.94983 1.26086 1.04094 0.95316 0.94297 1.70076 1.38136 0.98482 1.52837 0.85647 0.79265 0.78516 0.79136 1.19332 1.21805 1.15971 1.23333 1.01988 0.84296 1.01353 1.67780 1.12459 1.27354 1.08019 0.91388 0.91386 0.87623 0.90797 0.90793 0.78732 0.74188 0.90125 0.90070 0.92103 0.92109 0.95445 0.95576 0.92672 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 71.98 0.74 -0.87 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.34 -8.54 10.01 -55.93 -0.56 -9.10 16 4 C 0.55 15.98 7.98 70.44 0.56 16.54 16 5 O -0.51 -16.86 16.65 20.07 0.33 -16.52 16 6 C 0.17 4.84 7.58 137.46 1.04 5.89 16 7 N -0.43 -11.26 10.14 -188.75 -1.91 -13.17 16 8 C 0.05 1.09 10.58 85.04 0.90 1.99 16 9 C 0.17 3.18 6.70 38.70 0.26 3.44 16 10 N -0.69 -11.15 5.72 -338.60 -1.94 -13.08 16 11 C 0.11 2.26 4.94 86.38 0.43 2.69 16 12 C -0.10 -3.00 5.27 30.59 0.16 -2.84 16 13 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 14 C -0.53 -28.22 9.66 25.60 0.25 -27.98 16 15 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 16 C 0.00 -0.08 5.47 84.66 0.46 0.38 16 17 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 18 Si 0.95 41.26 27.47 68.60 1.88 43.14 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 22 C 0.07 1.27 11.20 85.04 0.95 2.22 16 23 N -0.44 -11.88 10.11 -188.74 -1.91 -13.79 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.20 3.11 6.89 -2.91 -0.02 3.09 16 30 H 0.42 5.42 8.50 -92.71 -0.79 4.64 16 31 H 0.08 1.48 7.99 -2.39 -0.02 1.46 16 32 H 0.08 1.48 7.99 -2.39 -0.02 1.46 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.03 1.04 7.20 -2.39 -0.02 1.02 16 36 H 0.03 0.98 7.57 -2.39 -0.02 0.96 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -72.22 332.20 2.75 -69.47 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.23 Total: 8.24 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 6.32 Total: 2.43 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -5.46 Total: -97.66 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.23 Total: -25.62 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Total: -72.22 2.75 -69.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.686 kcal (2) G-P(sol) polarization free energy of solvation -72.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds