Wall clock time and date at job start Tue Mar 31 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20764 * 119.99959 * 2 1 4 4 C 1.50698 * 120.00399 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47177 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47401 * 59.99712 * 5 4 2 7 7 C 1.53003 * 109.46965 * 299.99619 * 5 4 2 8 8 N 1.46497 * 109.47123 * 179.97438 * 5 4 2 9 9 C 1.39677 * 120.00083 * 185.47507 * 8 5 4 10 10 C 1.39296 * 119.94117 * 351.43481 * 9 8 5 11 11 C 1.38701 * 120.40485 * 179.97438 * 10 9 8 12 12 F 1.35092 * 119.86577 * 179.97438 * 11 10 9 13 13 C 1.37922 * 120.26840 * 0.02562 * 11 10 9 14 14 C 1.40709 * 119.87216 * 0.02562 * 13 11 10 15 15 C 1.41415 * 120.19293 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99758 * 24.93629 * 15 14 13 17 17 C 1.39927 * 119.99639 * 204.93011 * 15 14 13 18 18 N 1.30828 * 120.00141 * 19.72622 * 17 15 14 19 19 Si 1.86796 * 119.99576 * 199.72507 * 17 15 14 20 20 H 1.48501 * 109.47392 * 90.00457 * 19 17 15 21 21 H 1.48508 * 109.46795 * 210.00101 * 19 17 15 22 22 H 1.48497 * 109.47439 * 330.00054 * 19 17 15 23 23 C 1.38301 * 119.94069 * 171.45750 * 9 8 5 24 24 H 1.09001 * 109.47325 * 269.99361 * 1 2 3 25 25 H 1.09000 * 109.47251 * 29.99739 * 1 2 3 26 26 H 1.09005 * 109.46680 * 149.99491 * 1 2 3 27 27 H 1.08996 * 109.47060 * 59.99682 * 4 2 1 28 28 H 1.08999 * 109.47171 * 299.99784 * 4 2 1 29 29 H 1.09001 * 109.47238 * 172.10850 * 6 5 4 30 30 H 1.09004 * 109.47146 * 292.10465 * 6 5 4 31 31 H 1.08992 * 109.47061 * 52.11031 * 6 5 4 32 32 H 1.09003 * 109.47007 * 314.95462 * 7 5 4 33 33 H 1.08997 * 109.47090 * 74.95264 * 7 5 4 34 34 H 1.09000 * 109.47158 * 194.95662 * 7 5 4 35 35 H 0.96999 * 120.00342 * 5.47208 * 8 5 4 36 36 H 1.08004 * 119.79769 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.06140 * 179.97438 * 13 11 10 38 38 H 0.97004 * 120.00074 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.13281 * 359.72467 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 6 4.1339 -0.2238 1.2500 7 6 4.1348 -0.2223 -1.2485 8 7 4.4973 -2.2940 0.0002 9 6 5.8893 -2.2968 0.1163 10 6 6.5946 -1.0973 0.0523 11 6 7.9768 -1.0888 0.1670 12 9 8.6500 0.0807 0.1029 13 6 8.6669 -2.2695 0.3451 14 6 7.9661 -3.4879 0.4103 15 6 8.6667 -4.7026 0.5933 16 1 9.6345 -4.7007 1.0725 17 6 8.1060 -5.9068 0.1536 18 7 7.1553 -5.8960 -0.7451 19 14 8.7149 -7.5297 0.8498 20 1 7.9163 -7.8840 2.0506 21 1 8.5670 -8.5944 -0.1749 22 1 10.1454 -7.4010 1.2269 23 6 6.5648 -3.4904 0.2940 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9972 -1.8762 -0.8908 28 1 1.9973 -1.8770 0.8892 29 1 5.2185 -0.1449 1.3238 30 1 3.7007 0.7742 1.1827 31 1 3.7455 -0.7297 2.1339 32 1 3.6428 -0.6566 -2.1188 33 1 3.8100 0.8109 -1.1254 34 1 5.2151 -0.2491 -1.3907 35 1 4.0158 -3.1322 -0.0803 36 1 6.0619 -0.1682 -0.0874 37 1 9.7432 -2.2591 0.4336 38 1 6.7668 -6.7309 -1.0502 39 1 6.0178 -4.4201 0.3477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171502948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:27 Heat of formation + Delta-G solvation = -57.659192 kcal Electronic energy + Delta-G solvation = -21922.388507 eV Core-core repulsion = 18551.498091 eV Total energy + Delta-G solvation = -3370.890415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.65133 -40.15538 -38.17990 -36.04826 -33.51489 -31.75040 -30.86447 -29.48003 -27.52700 -27.04986 -26.84169 -25.21839 -21.30902 -21.09268 -19.83366 -19.07215 -17.43593 -16.49366 -16.02602 -15.49685 -15.11802 -14.95914 -14.88610 -14.60812 -14.32868 -13.94740 -13.79187 -13.60138 -13.16691 -12.69753 -12.56394 -12.38807 -12.03993 -11.99856 -11.64873 -11.45944 -11.39382 -11.11536 -10.92789 -10.79338 -10.70612 -10.42711 -10.20543 -10.03499 -9.71267 -9.28885 -9.19087 -8.66834 -7.30283 -6.85437 -6.27127 -4.43270 1.87807 2.75590 2.99685 3.05853 3.09715 3.23009 3.74899 3.91010 4.45918 4.57847 4.74137 4.90762 4.99880 5.20491 5.27869 5.44370 5.61641 5.64414 5.75584 5.77143 5.82199 6.17052 6.19897 6.34440 6.34601 6.43322 6.69501 6.75452 6.76629 6.87146 7.03347 7.19334 7.31902 7.48356 7.60678 7.75753 7.99654 8.04578 8.35398 8.62964 8.71637 8.88103 8.97414 10.14042 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.004848 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.084835 B = 5773.857422 C = 6883.080337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.357 3.643 3 O -0.445 6.445 4 C -0.175 4.175 5 C 0.198 3.802 6 C -0.184 4.184 7 C -0.183 4.183 8 N -0.751 5.751 9 C 0.246 3.754 10 C -0.342 4.342 11 C 0.139 3.861 12 F -0.169 7.169 13 C -0.290 4.290 14 C 0.159 3.841 15 C -0.460 4.460 16 H 0.080 0.920 17 C 0.081 3.919 18 N -0.784 5.784 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.240 4.240 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.390 0.610 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.280 0.720 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 3.990 0.932 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.232 3.768 3 O -0.319 6.319 4 C -0.212 4.212 5 C 0.110 3.890 6 C -0.242 4.242 7 C -0.241 4.241 8 N -0.384 5.384 9 C 0.146 3.854 10 C -0.364 4.364 11 C 0.119 3.881 12 F -0.148 7.148 13 C -0.312 4.312 14 C 0.156 3.844 15 C -0.490 4.490 16 H 0.098 0.902 17 C -0.138 4.138 18 N -0.409 5.409 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.185 1.185 23 C -0.264 4.264 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.224 0.776 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.570 4.628 0.778 13.418 hybrid contribution 0.031 -1.161 0.122 1.168 sum -12.539 3.466 0.900 13.041 Atomic orbital electron populations 1.22284 0.94578 1.04634 1.04521 1.24388 0.91611 0.90230 0.70562 1.90355 1.71297 1.35270 1.34931 1.22403 0.96200 0.97880 1.04757 1.19722 0.88189 0.85441 0.95632 1.22695 1.04932 1.00353 0.96201 1.22717 1.04265 1.00549 0.96526 1.44542 1.03706 1.05733 1.84370 1.17178 0.81839 0.93337 0.93015 1.20237 0.91929 0.97516 1.26752 1.17312 0.89786 0.79933 1.01027 1.91322 1.81074 1.48044 1.94360 1.20831 0.98339 0.91772 1.20232 1.17045 0.90989 0.91176 0.85231 1.19562 1.04466 0.90551 1.34385 0.90188 1.25891 0.93902 1.01306 0.92740 1.69872 1.21200 1.29527 1.20297 0.86342 0.80488 0.80522 0.79561 1.19248 1.20356 1.18537 1.20698 0.94237 0.95027 1.16473 0.88804 0.89814 0.89786 0.88188 0.88141 0.89675 0.90818 0.93624 0.93734 0.90926 0.89938 0.77622 0.86186 0.88225 0.90940 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 10.25 36.00 0.37 -1.01 16 2 C 0.36 3.81 6.71 -29.04 -0.19 3.62 16 3 O -0.45 -6.27 12.28 6.00 0.07 -6.20 16 4 C -0.17 -1.93 4.75 -27.88 -0.13 -2.06 16 5 C 0.20 3.04 0.80 -131.82 -0.11 2.93 16 6 C -0.18 -3.01 7.78 37.16 0.29 -2.72 16 7 C -0.18 -2.97 7.72 37.16 0.29 -2.69 16 8 N -0.75 -13.51 5.24 -46.05 -0.24 -13.75 16 9 C 0.25 5.52 6.17 -83.87 -0.52 5.01 16 10 C -0.34 -7.81 6.47 -39.02 -0.25 -8.06 16 11 C 0.14 3.40 7.28 -39.53 -0.29 3.11 16 12 F -0.17 -3.94 17.26 2.25 0.04 -3.90 16 13 C -0.29 -7.46 9.76 -38.76 -0.38 -7.84 16 14 C 0.16 4.23 5.56 -106.86 -0.59 3.64 16 15 C -0.46 -12.09 9.04 -37.74 -0.34 -12.43 16 16 H 0.08 2.04 7.92 -52.49 -0.42 1.62 16 17 C 0.08 1.97 5.09 -17.35 -0.09 1.89 16 18 N -0.78 -19.62 11.11 55.55 0.62 -19.00 16 19 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.24 -6.03 8.53 -38.66 -0.33 -6.36 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.61 4.70 -51.93 -0.24 1.36 16 30 H 0.07 1.17 5.66 -51.93 -0.29 0.88 16 31 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.07 1.16 5.89 -51.93 -0.31 0.86 16 34 H 0.08 1.55 4.88 -51.93 -0.25 1.30 16 35 H 0.39 6.45 8.50 -40.82 -0.35 6.10 16 36 H 0.12 2.56 3.76 -52.48 -0.20 2.36 16 37 H 0.10 2.47 8.06 -52.49 -0.42 2.04 16 38 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 39 H 0.12 2.99 6.28 -52.49 -0.33 2.66 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -28.69 313.55 -6.99 -35.68 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.90 Total: 12.22 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.28 Total: -22.97 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.38 Total: -32.76 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: 0.07 Total: -6.20 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.69 -6.99 -35.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171502948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.979 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds