Wall clock time and date at job start Tue Mar 31 2020 00:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20764 * 119.99959 * 2 1 4 4 C 1.50698 * 120.00399 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47177 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47401 * 59.99712 * 5 4 2 7 7 C 1.53003 * 109.46965 * 299.99619 * 5 4 2 8 8 N 1.46497 * 109.47123 * 179.97438 * 5 4 2 9 9 C 1.39677 * 120.00083 * 185.47507 * 8 5 4 10 10 C 1.39296 * 119.94117 * 351.43481 * 9 8 5 11 11 C 1.38701 * 120.40485 * 179.97438 * 10 9 8 12 12 F 1.35092 * 119.86577 * 179.97438 * 11 10 9 13 13 C 1.37922 * 120.26840 * 0.02562 * 11 10 9 14 14 C 1.40709 * 119.87216 * 0.02562 * 13 11 10 15 15 C 1.41415 * 120.19293 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99758 * 24.93629 * 15 14 13 17 17 C 1.39927 * 119.99639 * 204.93011 * 15 14 13 18 18 N 1.30828 * 120.00141 * 19.72622 * 17 15 14 19 19 Si 1.86796 * 119.99576 * 199.72507 * 17 15 14 20 20 H 1.48501 * 109.47392 * 90.00457 * 19 17 15 21 21 H 1.48508 * 109.46795 * 210.00101 * 19 17 15 22 22 H 1.48497 * 109.47439 * 330.00054 * 19 17 15 23 23 C 1.38301 * 119.94069 * 171.45750 * 9 8 5 24 24 H 1.09001 * 109.47325 * 269.99361 * 1 2 3 25 25 H 1.09000 * 109.47251 * 29.99739 * 1 2 3 26 26 H 1.09005 * 109.46680 * 149.99491 * 1 2 3 27 27 H 1.08996 * 109.47060 * 59.99682 * 4 2 1 28 28 H 1.08999 * 109.47171 * 299.99784 * 4 2 1 29 29 H 1.09001 * 109.47238 * 172.10850 * 6 5 4 30 30 H 1.09004 * 109.47146 * 292.10465 * 6 5 4 31 31 H 1.08992 * 109.47061 * 52.11031 * 6 5 4 32 32 H 1.09003 * 109.47007 * 314.95462 * 7 5 4 33 33 H 1.08997 * 109.47090 * 74.95264 * 7 5 4 34 34 H 1.09000 * 109.47158 * 194.95662 * 7 5 4 35 35 H 0.96999 * 120.00342 * 5.47208 * 8 5 4 36 36 H 1.08004 * 119.79769 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.06140 * 179.97438 * 13 11 10 38 38 H 0.97004 * 120.00074 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.13281 * 359.72467 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 6 4.1339 -0.2238 1.2500 7 6 4.1348 -0.2223 -1.2485 8 7 4.4973 -2.2940 0.0002 9 6 5.8893 -2.2968 0.1163 10 6 6.5946 -1.0973 0.0523 11 6 7.9768 -1.0888 0.1670 12 9 8.6500 0.0807 0.1029 13 6 8.6669 -2.2695 0.3451 14 6 7.9661 -3.4879 0.4103 15 6 8.6667 -4.7026 0.5933 16 1 9.6345 -4.7007 1.0725 17 6 8.1060 -5.9068 0.1536 18 7 7.1553 -5.8960 -0.7451 19 14 8.7149 -7.5297 0.8498 20 1 7.9163 -7.8840 2.0506 21 1 8.5670 -8.5944 -0.1749 22 1 10.1454 -7.4010 1.2269 23 6 6.5648 -3.4904 0.2940 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9972 -1.8762 -0.8908 28 1 1.9973 -1.8770 0.8892 29 1 5.2185 -0.1449 1.3238 30 1 3.7007 0.7742 1.1827 31 1 3.7455 -0.7297 2.1339 32 1 3.6428 -0.6566 -2.1188 33 1 3.8100 0.8109 -1.1254 34 1 5.2151 -0.2491 -1.3907 35 1 4.0158 -3.1322 -0.0803 36 1 6.0619 -0.1682 -0.0874 37 1 9.7432 -2.2591 0.4336 38 1 6.7668 -6.7309 -1.0502 39 1 6.0178 -4.4201 0.3477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171502948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:26 Heat of formation + Delta-G solvation = -73.503926 kcal Electronic energy + Delta-G solvation = -21923.075586 eV Core-core repulsion = 18551.498091 eV Total energy + Delta-G solvation = -3371.577495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.58120 -41.23238 -39.71394 -37.62323 -35.31886 -33.21187 -31.82075 -31.26057 -29.06381 -28.31741 -28.17305 -27.03234 -22.98176 -22.87733 -21.20602 -20.17178 -19.25156 -18.09185 -17.30719 -16.84948 -16.72859 -16.39956 -16.36476 -16.23515 -15.99542 -15.32590 -15.06565 -15.02568 -14.71212 -14.03433 -13.87924 -13.72331 -13.35375 -13.11623 -13.03995 -12.85860 -12.73079 -12.65319 -12.52414 -12.20189 -12.18471 -12.02550 -11.91530 -11.78796 -11.14684 -11.06939 -10.44171 -10.35622 -9.23864 -8.69811 -8.02014 -6.40646 0.91769 1.07950 1.09997 1.41716 1.54176 1.55626 2.23069 2.55574 2.70594 3.39781 3.65949 3.68913 3.87657 4.02640 4.16680 4.31399 4.52990 4.62634 4.65864 4.73146 4.77423 4.80683 4.81615 4.87243 4.99681 5.05310 5.06276 5.15160 5.26565 5.31560 5.37099 5.41649 5.53701 5.73573 5.86149 6.08481 6.14278 6.46462 6.68838 6.84130 6.93925 6.97055 7.20766 8.31956 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.004848 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.084835 B = 5773.857422 C = 6883.080337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.360 3.640 3 O -0.487 6.487 4 C -0.171 4.171 5 C 0.191 3.809 6 C -0.179 4.179 7 C -0.177 4.177 8 N -0.738 5.738 9 C 0.257 3.743 10 C -0.338 4.338 11 C 0.130 3.870 12 F -0.165 7.165 13 C -0.318 4.318 14 C 0.135 3.865 15 C -0.497 4.497 16 H 0.074 0.926 17 C 0.045 3.955 18 N -0.809 5.809 19 Si 0.981 3.019 20 H -0.260 1.260 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.260 4.260 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.400 0.600 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.291 0.709 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 2.943 1.020 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.238 3.762 3 O -0.364 6.364 4 C -0.209 4.209 5 C 0.105 3.895 6 C -0.237 4.237 7 C -0.235 4.235 8 N -0.370 5.370 9 C 0.155 3.845 10 C -0.361 4.361 11 C 0.111 3.889 12 F -0.144 7.144 13 C -0.340 4.340 14 C 0.131 3.869 15 C -0.526 4.526 16 H 0.092 0.908 17 C -0.172 4.172 18 N -0.433 5.433 19 Si 0.802 3.198 20 H -0.184 1.184 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.284 4.284 24 H 0.129 0.871 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.235 0.765 36 H 0.153 0.847 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.234 3.591 0.856 15.675 hybrid contribution 0.770 -0.743 0.053 1.071 sum -14.464 2.848 0.909 14.770 Atomic orbital electron populations 1.22271 0.91054 1.05933 1.05940 1.24847 0.93399 0.89132 0.68790 1.90355 1.72399 1.36399 1.37204 1.22444 0.92418 0.99060 1.06972 1.19943 0.91039 0.83867 0.94689 1.22618 1.02816 1.01120 0.97112 1.22635 1.02204 1.01174 0.97512 1.44614 1.02040 1.07485 1.82866 1.17186 0.83938 0.92251 0.91157 1.20457 0.91369 0.98448 1.25782 1.17490 0.90542 0.79812 1.01071 1.91318 1.81124 1.47633 1.94328 1.20896 0.98345 0.92387 1.22359 1.17378 0.92055 0.91647 0.85799 1.19795 1.04972 0.91801 1.36009 0.90753 1.26684 0.93874 1.04284 0.92390 1.69892 1.21753 1.31147 1.20533 0.85220 0.79716 0.75826 0.79042 1.18427 1.19012 1.18640 1.20659 0.93875 0.95625 1.18230 0.87119 0.89739 0.87303 0.85922 0.85981 0.92673 0.90300 0.92771 0.92498 0.90658 0.92948 0.76489 0.84682 0.88654 0.89860 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 10.25 71.23 0.73 -1.14 16 2 C 0.36 6.57 6.71 29.10 0.20 6.77 16 3 O -0.49 -12.84 12.28 -1.46 -0.02 -12.86 16 4 C -0.17 -3.18 4.75 29.85 0.14 -3.04 16 5 C 0.19 5.54 0.80 3.60 0.00 5.54 16 6 C -0.18 -5.65 7.78 71.98 0.56 -5.09 16 7 C -0.18 -5.57 7.72 71.98 0.56 -5.01 16 8 N -0.74 -25.59 5.24 -299.60 -1.57 -27.16 16 9 C 0.26 11.60 6.17 38.16 0.24 11.84 16 10 C -0.34 -15.68 6.47 22.64 0.15 -15.54 16 11 C 0.13 6.57 7.28 22.31 0.16 6.73 16 12 F -0.17 -7.88 17.26 44.97 0.78 -7.11 16 13 C -0.32 -17.10 9.76 22.80 0.22 -16.88 16 14 C 0.13 7.43 5.56 -21.31 -0.12 7.31 16 15 C -0.50 -26.93 9.04 23.46 0.21 -26.72 16 16 H 0.07 3.95 7.92 -2.91 -0.02 3.92 16 17 C 0.04 2.20 5.09 85.25 0.43 2.64 16 18 N -0.81 -40.50 11.11 21.82 0.24 -40.25 16 19 Si 0.98 37.11 29.60 68.60 2.03 39.15 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 C -0.26 -13.29 8.53 22.86 0.20 -13.10 16 24 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 0.54 8.12 -2.38 -0.02 0.52 16 27 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 2.07 4.70 -2.39 -0.01 2.06 16 30 H 0.08 2.44 5.66 -2.39 -0.01 2.42 16 31 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 33 H 0.07 2.35 5.89 -2.39 -0.01 2.33 16 34 H 0.05 1.96 4.88 -2.39 -0.01 1.95 16 35 H 0.40 12.42 8.50 -92.71 -0.79 11.63 16 36 H 0.14 5.83 3.76 -2.91 -0.01 5.81 16 37 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 38 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 39 H 0.11 5.73 6.28 -2.91 -0.02 5.71 16 Total: -1.00 -64.18 313.55 5.44 -58.75 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.30 Total: 35.17 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 3.68 Total: -45.68 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.33 Total: -67.42 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.02 Total: -12.86 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.78 Total: -7.11 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.15 kcal Total: -64.18 5.44 -58.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171502948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.757 kcal (2) G-P(sol) polarization free energy of solvation -64.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds