Wall clock time and date at job start Tue Mar 31 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34952 * 126.54143 * 2 1 4 4 O 1.35211 * 125.48814 * 0.02562 * 3 2 1 5 5 N 1.31531 * 109.01771 * 180.02562 * 3 2 1 6 6 C 1.33225 * 109.75891 * 359.76333 * 5 3 2 7 7 C 1.36723 * 107.96527 * 0.38307 * 6 5 3 8 8 C 1.46376 * 126.82612 * 179.89317 * 7 6 5 9 9 O 1.21739 * 119.99636 * 185.01305 * 8 7 6 10 10 N 1.34778 * 120.00250 * 5.02045 * 8 7 6 11 11 C 1.46493 * 120.00092 * 174.66411 * 10 8 7 12 12 H 1.09004 * 109.41610 * 35.13797 * 11 10 8 13 13 C 1.52963 * 109.41509 * 154.99441 * 11 10 8 14 14 C 1.53224 * 109.40531 * 183.63172 * 13 11 10 15 15 C 1.51273 * 108.53936 * 305.37834 * 14 13 11 16 16 C 1.37877 * 120.84646 * 231.32847 * 15 14 13 17 17 N 1.31516 * 119.99780 * 180.02562 * 16 15 14 18 18 Si 1.86803 * 120.00327 * 0.02562 * 16 15 14 19 19 H 1.48500 * 109.47044 * 89.99991 * 18 16 15 20 20 H 1.48492 * 109.47194 * 210.00252 * 18 16 15 21 21 H 1.48502 * 109.46832 * 329.99970 * 18 16 15 22 22 C 1.51263 * 118.30156 * 51.34239 * 15 14 13 23 23 C 1.53226 * 108.69880 * 308.55969 * 22 15 14 24 24 H 1.08996 * 109.47465 * 273.41551 * 1 2 3 25 25 H 1.09001 * 109.47286 * 33.42412 * 1 2 3 26 26 H 1.09011 * 109.46577 * 153.41630 * 1 2 3 27 27 H 0.96697 * 114.00363 * 90.00555 * 4 3 2 28 28 H 1.08008 * 126.01769 * 180.25301 * 6 5 3 29 29 H 0.96995 * 119.99680 * 354.65745 * 10 8 7 30 30 H 1.08997 * 109.47866 * 63.65601 * 13 11 10 31 31 H 1.09001 * 109.49322 * 303.61969 * 13 11 10 32 32 H 1.09001 * 109.62766 * 185.65876 * 14 13 11 33 33 H 1.09007 * 109.62933 * 65.08742 * 14 13 11 34 34 H 0.97001 * 119.99953 * 179.97438 * 17 16 15 35 35 H 1.09007 * 109.62440 * 68.37016 * 22 15 14 36 36 H 1.08998 * 109.62789 * 188.74874 * 22 15 14 37 37 H 1.09000 * 109.48544 * 174.69736 * 23 22 15 38 38 H 1.08994 * 109.48600 * 294.74404 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8513 2.3704 0.0005 5 7 3.5227 0.6882 -0.0006 6 6 3.5747 -0.6430 0.0042 7 6 2.2916 -1.1152 -0.0007 8 6 1.8728 -2.5177 -0.0002 9 8 0.6927 -2.8006 -0.0971 10 7 2.7936 -3.4960 0.1077 11 6 2.3680 -4.8927 0.2259 12 1 1.4706 -5.0500 -0.3725 13 6 3.4835 -5.8088 -0.2804 14 6 3.0045 -7.2637 -0.2416 15 6 2.5290 -7.5763 1.1600 16 6 2.9934 -8.6866 1.8328 17 7 2.5684 -8.9428 3.0508 18 14 4.2261 -9.8269 1.0146 19 1 5.6047 -9.3699 1.3245 20 1 4.0364 -11.2086 1.5243 21 1 4.0173 -9.8085 -0.4555 22 6 1.5309 -6.6400 1.8043 23 6 2.0611 -5.2065 1.6956 24 1 -0.3634 0.0612 1.0258 25 1 -0.3634 0.8577 -0.5661 26 1 -0.3633 -0.9191 -0.4599 27 1 1.7303 2.7444 0.8840 28 1 4.4724 -1.2436 0.0089 29 1 3.7381 -3.2751 0.1069 30 1 4.3616 -5.6981 0.3559 31 1 3.7401 -5.5377 -1.3045 32 1 3.8278 -7.9274 -0.5056 33 1 2.1827 -7.3975 -0.9452 34 1 2.8948 -9.7240 3.5241 35 1 0.5728 -6.7160 1.2900 36 1 1.4050 -6.9051 2.8540 37 1 1.3100 -4.5116 2.0711 38 1 2.9727 -5.1103 2.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190995932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:36 Heat of formation + Delta-G solvation = -23.406780 kcal Electronic energy + Delta-G solvation = -21756.503954 eV Core-core repulsion = 18407.018796 eV Total energy + Delta-G solvation = -3349.485158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.39156 -39.37122 -37.61715 -36.73805 -34.45946 -33.65387 -31.76976 -29.79443 -29.45617 -27.31199 -27.04181 -23.54128 -22.09890 -21.70582 -21.44310 -20.03202 -19.51917 -18.82027 -17.47166 -16.68875 -16.11156 -16.00628 -15.40031 -14.79775 -14.47870 -14.40741 -14.19014 -13.67933 -13.19182 -12.97460 -12.88897 -12.82594 -12.43069 -12.21240 -12.09966 -11.71413 -11.08516 -10.88877 -10.79951 -10.45891 -10.27968 -10.00177 -9.97435 -9.77503 -9.59245 -9.15378 -8.90658 -8.68467 -8.49722 -8.32945 -6.12732 -4.04311 1.07987 2.00253 2.48674 3.23819 3.33622 3.34397 3.34746 3.47506 3.58191 4.35174 4.58420 4.58907 4.91459 4.98130 5.13704 5.17158 5.38211 5.59600 5.80181 5.82362 6.10324 6.17188 6.26609 6.41320 6.43889 6.64483 6.70970 6.73515 6.97668 7.03553 7.16643 7.24036 7.35501 7.55624 7.60931 7.70081 7.77908 7.83586 8.35566 8.37017 8.94145 9.51254 10.96778 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039889 B = 0.003689 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.787858 B = 7588.605054 C = 7860.934870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.428 5.428 3 C 0.388 3.612 4 O -0.441 6.441 5 N -0.488 5.488 6 C 0.049 3.951 7 C -0.068 4.068 8 C 0.590 3.410 9 O -0.547 6.547 10 N -0.707 5.707 11 C 0.156 3.844 12 H 0.082 0.918 13 C -0.114 4.114 14 C -0.012 4.012 15 C -0.491 4.491 16 C 0.076 3.924 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.012 3.988 23 C -0.114 4.114 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.403 0.597 28 H 0.186 0.814 29 H 0.397 0.603 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.005 0.995 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 16.953 -4.373 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.120 5.120 3 C 0.089 3.911 4 O -0.242 6.242 5 N -0.216 5.216 6 C -0.106 4.106 7 C -0.185 4.185 8 C 0.375 3.625 9 O -0.426 6.426 10 N -0.356 5.356 11 C 0.053 3.947 12 H 0.100 0.900 13 C -0.153 4.153 14 C -0.050 4.050 15 C -0.510 4.510 16 C -0.127 4.127 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.026 4.026 23 C -0.153 4.153 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.261 0.739 28 H 0.203 0.797 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.482 17.202 -4.871 17.885 hybrid contribution 0.363 -0.731 0.242 0.851 sum -0.119 16.471 -4.629 17.110 Atomic orbital electron populations 1.22344 0.75135 1.06311 1.04186 1.45646 1.08503 1.05588 1.52296 1.20207 0.84554 0.81361 1.05023 1.84801 1.87046 1.18064 1.34245 1.70272 1.16467 1.12885 1.22003 1.22552 0.95617 0.90144 1.02279 1.20855 0.91024 0.88721 1.17891 1.16627 0.86028 0.82740 0.77082 1.90790 1.16990 1.83763 1.51051 1.46087 1.08984 1.07590 1.72953 1.21239 0.98527 0.76265 0.98630 0.90009 1.21879 0.97192 0.98130 0.98066 1.19701 0.96573 0.91165 0.97548 1.20033 1.24747 1.08389 0.97794 1.24856 0.96219 0.97007 0.94574 1.69839 1.43660 1.27644 1.11448 0.86661 0.81655 0.80077 0.79970 1.20384 1.21647 1.19173 1.19341 0.94496 0.89289 0.99473 1.22056 0.99746 0.99957 0.93512 0.90125 0.89435 0.86936 0.73947 0.79683 0.76947 0.92310 0.94147 0.94735 0.96160 0.92553 0.97612 0.92325 0.94788 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.78 59.84 0.65 1.25 16 2 N -0.43 -5.29 3.20 -122.12 -0.39 -5.68 16 3 C 0.39 4.68 9.01 -89.59 -0.81 3.87 16 4 O -0.44 -3.95 13.53 -17.33 -0.23 -4.19 16 5 N -0.49 -6.56 11.22 -14.61 -0.16 -6.72 16 6 C 0.05 0.60 11.36 -17.50 -0.20 0.40 16 7 C -0.07 -0.93 6.92 -81.98 -0.57 -1.50 16 8 C 0.59 9.37 7.73 -12.99 -0.10 9.27 16 9 O -0.55 -10.31 14.44 5.15 0.07 -10.23 16 10 N -0.71 -10.66 5.06 -55.03 -0.28 -10.94 16 11 C 0.16 2.89 2.40 -67.76 -0.16 2.73 16 12 H 0.08 1.68 7.51 -51.93 -0.39 1.29 16 13 C -0.11 -2.10 5.41 -26.63 -0.14 -2.25 16 14 C -0.01 -0.26 5.59 -27.49 -0.15 -0.41 16 15 C -0.49 -12.52 5.52 -98.92 -0.55 -13.06 16 16 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 17 N -0.89 -25.13 12.73 55.43 0.71 -24.42 16 18 Si 0.89 20.45 27.27 -169.99 -4.64 15.81 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -5.93 6.46 56.52 0.37 -5.57 16 22 C 0.01 0.29 5.95 -27.49 -0.16 0.13 16 23 C -0.11 -2.39 5.54 -26.42 -0.15 -2.54 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.11 1.33 6.24 -51.92 -0.32 1.01 16 27 H 0.40 1.46 9.06 45.56 0.41 1.87 16 28 H 0.19 1.68 7.45 -52.48 -0.39 1.29 16 29 H 0.40 4.73 7.53 -40.82 -0.31 4.42 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 33 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -32.41 312.86 -6.82 -39.23 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.17 Total: 2.60 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.44 Total: -0.17 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.13 Total: -47.76 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.16 Total: -14.42 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.64 Total: 15.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.41 -6.82 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190995932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.824 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds