Wall clock time and date at job start Tue Mar 31 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34952 * 126.54143 * 2 1 4 4 O 1.35211 * 125.48814 * 0.02562 * 3 2 1 5 5 N 1.31531 * 109.01771 * 180.02562 * 3 2 1 6 6 C 1.33225 * 109.75891 * 359.76333 * 5 3 2 7 7 C 1.36723 * 107.96527 * 0.38307 * 6 5 3 8 8 C 1.46376 * 126.82612 * 179.89317 * 7 6 5 9 9 O 1.21739 * 119.99636 * 185.01305 * 8 7 6 10 10 N 1.34778 * 120.00250 * 5.02045 * 8 7 6 11 11 C 1.46493 * 120.00092 * 174.66411 * 10 8 7 12 12 H 1.09004 * 109.41610 * 35.13797 * 11 10 8 13 13 C 1.52963 * 109.41509 * 154.99441 * 11 10 8 14 14 C 1.53224 * 109.40531 * 183.63172 * 13 11 10 15 15 C 1.51273 * 108.53936 * 305.37834 * 14 13 11 16 16 C 1.37877 * 120.84646 * 231.32847 * 15 14 13 17 17 N 1.31516 * 119.99780 * 180.02562 * 16 15 14 18 18 Si 1.86803 * 120.00327 * 0.02562 * 16 15 14 19 19 H 1.48500 * 109.47044 * 89.99991 * 18 16 15 20 20 H 1.48492 * 109.47194 * 210.00252 * 18 16 15 21 21 H 1.48502 * 109.46832 * 329.99970 * 18 16 15 22 22 C 1.51263 * 118.30156 * 51.34239 * 15 14 13 23 23 C 1.53226 * 108.69880 * 308.55969 * 22 15 14 24 24 H 1.08996 * 109.47465 * 273.41551 * 1 2 3 25 25 H 1.09001 * 109.47286 * 33.42412 * 1 2 3 26 26 H 1.09011 * 109.46577 * 153.41630 * 1 2 3 27 27 H 0.96697 * 114.00363 * 90.00555 * 4 3 2 28 28 H 1.08008 * 126.01769 * 180.25301 * 6 5 3 29 29 H 0.96995 * 119.99680 * 354.65745 * 10 8 7 30 30 H 1.08997 * 109.47866 * 63.65601 * 13 11 10 31 31 H 1.09001 * 109.49322 * 303.61969 * 13 11 10 32 32 H 1.09001 * 109.62766 * 185.65876 * 14 13 11 33 33 H 1.09007 * 109.62933 * 65.08742 * 14 13 11 34 34 H 0.97001 * 119.99953 * 179.97438 * 17 16 15 35 35 H 1.09007 * 109.62440 * 68.37016 * 22 15 14 36 36 H 1.08998 * 109.62789 * 188.74874 * 22 15 14 37 37 H 1.09000 * 109.48544 * 174.69736 * 23 22 15 38 38 H 1.08994 * 109.48600 * 294.74404 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8513 2.3704 0.0005 5 7 3.5227 0.6882 -0.0006 6 6 3.5747 -0.6430 0.0042 7 6 2.2916 -1.1152 -0.0007 8 6 1.8728 -2.5177 -0.0002 9 8 0.6927 -2.8006 -0.0971 10 7 2.7936 -3.4960 0.1077 11 6 2.3680 -4.8927 0.2259 12 1 1.4706 -5.0500 -0.3725 13 6 3.4835 -5.8088 -0.2804 14 6 3.0045 -7.2637 -0.2416 15 6 2.5290 -7.5763 1.1600 16 6 2.9934 -8.6866 1.8328 17 7 2.5684 -8.9428 3.0508 18 14 4.2261 -9.8269 1.0146 19 1 5.6047 -9.3699 1.3245 20 1 4.0364 -11.2086 1.5243 21 1 4.0173 -9.8085 -0.4555 22 6 1.5309 -6.6400 1.8043 23 6 2.0611 -5.2065 1.6956 24 1 -0.3634 0.0612 1.0258 25 1 -0.3634 0.8577 -0.5661 26 1 -0.3633 -0.9191 -0.4599 27 1 1.7303 2.7444 0.8840 28 1 4.4724 -1.2436 0.0089 29 1 3.7381 -3.2751 0.1069 30 1 4.3616 -5.6981 0.3559 31 1 3.7401 -5.5377 -1.3045 32 1 3.8278 -7.9274 -0.5056 33 1 2.1827 -7.3975 -0.9452 34 1 2.8948 -9.7240 3.5241 35 1 0.5728 -6.7160 1.2900 36 1 1.4050 -6.9051 2.8540 37 1 1.3100 -4.5116 2.0711 38 1 2.9727 -5.1103 2.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190995932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:36 Heat of formation + Delta-G solvation = -49.548608 kcal Electronic energy + Delta-G solvation = -21757.637549 eV Core-core repulsion = 18407.018796 eV Total energy + Delta-G solvation = -3350.618752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.32144 -40.67967 -38.53183 -38.18661 -35.64671 -34.96580 -33.49911 -31.47911 -30.75004 -28.68705 -28.07930 -24.82439 -23.61954 -23.24860 -22.57336 -21.37708 -21.01971 -19.65894 -18.63483 -17.88673 -17.54235 -17.27798 -16.50450 -16.34074 -15.89134 -15.58072 -15.25169 -15.00253 -14.65461 -14.54578 -14.00944 -13.94037 -13.73126 -13.68445 -13.43183 -13.18615 -12.76371 -12.69243 -12.58367 -11.92307 -11.80693 -11.43518 -11.36327 -11.09242 -10.91245 -10.80986 -10.67673 -10.51294 -9.99252 -9.54416 -8.13914 -6.09533 0.10614 1.10200 1.43530 1.46762 1.55398 1.55548 2.19528 2.31361 2.44484 2.80247 3.14719 3.59006 3.80057 3.93969 4.04906 4.23587 4.26271 4.33243 4.51693 4.61098 4.74445 4.87222 4.94047 5.00948 5.06563 5.15058 5.23791 5.27627 5.31219 5.54644 5.58048 5.60531 5.68659 5.78037 5.83964 6.35756 6.48375 6.58877 6.69618 6.97087 7.18144 7.49110 8.97455 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039889 B = 0.003689 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.787858 B = 7588.605054 C = 7860.934870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.433 5.433 3 C 0.401 3.599 4 O -0.440 6.440 5 N -0.515 5.515 6 C 0.065 3.935 7 C -0.097 4.097 8 C 0.592 3.408 9 O -0.583 6.583 10 N -0.695 5.695 11 C 0.169 3.831 12 H 0.061 0.939 13 C -0.106 4.106 14 C -0.017 4.017 15 C -0.500 4.500 16 C 0.019 3.981 17 N -0.935 5.935 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.298 1.298 21 H -0.250 1.250 22 C 0.009 3.991 23 C -0.101 4.101 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.428 0.572 28 H 0.215 0.785 29 H 0.415 0.585 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.018 0.982 34 H 0.262 0.738 35 H -0.009 1.009 36 H 0.023 0.977 37 H 0.028 0.972 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 18.788 -5.901 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.125 5.125 3 C 0.101 3.899 4 O -0.245 6.245 5 N -0.244 5.244 6 C -0.089 4.089 7 C -0.213 4.213 8 C 0.380 3.620 9 O -0.465 6.465 10 N -0.346 5.346 11 C 0.066 3.934 12 H 0.079 0.921 13 C -0.144 4.144 14 C -0.055 4.055 15 C -0.519 4.519 16 C -0.179 4.179 17 N -0.575 5.575 18 Si 0.772 3.228 19 H -0.193 1.193 20 H -0.225 1.225 21 H -0.174 1.174 22 C -0.029 4.029 23 C -0.140 4.140 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.290 0.710 28 H 0.232 0.768 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.009 0.991 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.304 19.084 -6.403 20.171 hybrid contribution -0.304 -1.154 0.748 1.408 sum 1.000 17.929 -5.655 18.827 Atomic orbital electron populations 1.22435 0.74088 1.06189 1.05251 1.45797 1.09243 1.05375 1.52132 1.20354 0.84362 0.82141 1.03018 1.84764 1.86743 1.16483 1.36498 1.70333 1.17225 1.13359 1.23491 1.23060 0.95993 0.90049 0.99845 1.20537 0.91920 0.87870 1.20937 1.16879 0.85424 0.83722 0.76019 1.90780 1.18566 1.84455 1.52683 1.45714 1.10009 1.05993 1.72844 1.20790 0.98189 0.78418 0.96038 0.92098 1.21748 0.96909 0.95330 1.00414 1.19733 0.96782 0.93923 0.95022 1.20627 1.23923 1.07916 0.99442 1.25695 0.98363 0.98713 0.95081 1.70000 1.45729 1.28460 1.13270 0.85719 0.79690 0.77572 0.79781 1.19294 1.22494 1.17428 1.19288 0.94359 0.92133 0.97154 1.21844 0.99246 0.97155 0.95786 0.88828 0.86964 0.89235 0.70996 0.76833 0.74721 0.91269 0.90689 0.93958 0.96330 0.92863 0.99093 0.95791 0.95292 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 10.78 127.77 1.38 2.50 16 2 N -0.43 -9.90 3.20 -651.99 -2.09 -11.99 16 3 C 0.40 8.66 9.01 179.99 1.62 10.28 16 4 O -0.44 -6.57 13.53 -84.92 -1.15 -7.72 16 5 N -0.51 -12.48 11.22 -313.63 -3.52 -16.00 16 6 C 0.07 1.43 11.36 84.13 0.96 2.38 16 7 C -0.10 -2.48 6.92 39.80 0.28 -2.20 16 8 C 0.59 18.15 7.73 86.36 0.67 18.81 16 9 O -0.58 -22.03 14.44 -4.47 -0.06 -22.10 16 10 N -0.70 -19.53 5.06 -446.22 -2.26 -21.79 16 11 C 0.17 6.09 2.40 45.11 0.11 6.19 16 12 H 0.06 2.48 7.51 -2.38 -0.02 2.47 16 13 C -0.11 -3.59 5.41 30.66 0.17 -3.42 16 14 C -0.02 -0.70 5.59 30.10 0.17 -0.53 16 15 C -0.50 -25.63 5.52 -16.17 -0.09 -25.72 16 16 C 0.02 1.04 5.46 84.65 0.46 1.51 16 17 N -0.93 -54.60 12.73 21.45 0.27 -54.33 16 18 Si 0.95 41.61 27.27 68.60 1.87 43.48 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.25 -10.22 6.46 99.48 0.64 -9.58 16 22 C 0.01 0.45 5.95 30.10 0.18 0.63 16 23 C -0.10 -4.29 5.54 30.80 0.17 -4.12 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 2.11 6.24 -2.38 -0.01 2.10 16 27 H 0.43 1.69 9.06 -74.06 -0.67 1.02 16 28 H 0.22 3.07 7.45 -2.91 -0.02 3.05 16 29 H 0.42 8.54 7.53 -92.71 -0.70 7.84 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.71 4.78 -2.39 -0.01 1.70 16 33 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 36 H 0.02 1.36 7.07 -2.39 -0.02 1.34 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.69 312.86 -1.19 -72.89 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.32 Total: 11.25 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.06 Total: 6.31 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -7.59 Total: -104.11 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.21 Total: -29.82 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.87 Total: 43.48 kcal Total: -71.69 -1.19 -72.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190995932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.339 kcal (2) G-P(sol) polarization free energy of solvation -71.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds