Wall clock time and date at job start Tue Mar 31 2020 00:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47098 * 2 1 4 4 C 1.35673 * 116.99899 * 179.97438 * 3 2 1 5 5 C 1.39487 * 120.00804 * 180.02562 * 4 3 2 6 6 N 1.31958 * 120.11184 * 179.97438 * 5 4 3 7 7 C 1.32194 * 120.13961 * 359.97438 * 6 5 4 8 8 C 1.39238 * 120.02177 * 0.02562 * 7 6 5 9 9 C 1.48137 * 120.04994 * 179.97438 * 8 7 6 10 10 O 1.21517 * 120.00460 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99580 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00097 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47559 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47471 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47334 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99809 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99847 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47606 * 59.99938 * 19 17 15 21 21 H 1.48507 * 109.47230 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47051 * 299.99529 * 19 17 15 23 23 N 1.32163 * 120.00927 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.46896 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46979 * 300.00157 * 1 2 3 26 26 H 1.09005 * 109.46995 * 60.00320 * 1 2 3 27 27 H 1.09002 * 109.47218 * 239.99467 * 2 1 3 28 28 H 1.09005 * 109.46995 * 119.99679 * 2 1 3 29 29 H 1.07997 * 119.94990 * 359.97257 * 5 4 3 30 30 H 1.08004 * 119.98496 * 180.02562 * 7 6 5 31 31 H 0.97005 * 120.00156 * 359.97438 * 11 9 8 32 32 H 1.09003 * 109.46968 * 300.00095 * 12 11 9 33 33 H 1.09004 * 109.47001 * 59.99710 * 12 11 9 34 34 H 1.08998 * 109.46654 * 299.99906 * 13 12 11 35 35 H 1.09000 * 109.47079 * 59.99119 * 13 12 11 36 36 H 1.09003 * 109.47204 * 300.00233 * 14 13 12 37 37 H 1.09004 * 109.46853 * 59.99902 * 14 13 12 38 38 H 0.96998 * 119.99356 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8847 2.8139 0.0011 6 7 5.1926 2.9891 0.0022 7 6 6.0023 1.9442 0.0032 8 6 5.4761 0.6551 0.0026 9 6 6.3829 -0.5163 0.0032 10 8 7.5870 -0.3527 0.0046 11 7 5.8723 -1.7636 0.0021 12 6 6.7689 -2.9222 0.0032 13 6 5.9404 -4.2084 0.0023 14 6 6.8769 -5.4183 0.0028 15 6 6.0608 -6.6852 0.0025 16 1 4.9821 -6.6327 0.0016 17 6 6.6913 -7.9114 0.0034 18 7 8.0049 -7.9753 0.0041 19 14 5.6797 -9.4817 0.0024 20 1 4.8245 -9.5190 -1.2111 21 1 6.5886 -10.6561 0.0030 22 1 4.8217 -9.5186 1.2139 23 7 4.1566 0.4770 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.2263 3.6699 0.0007 30 1 7.0724 2.0905 0.0044 31 1 4.9111 -1.8943 0.0013 32 1 7.3991 -2.8948 -0.8858 33 1 7.3963 -2.8952 0.8942 34 1 5.3107 -4.2355 0.8915 35 1 5.3127 -4.2356 -0.8884 36 1 7.5064 -5.3910 -0.8867 37 1 7.5049 -5.3913 0.8933 38 1 8.4483 -8.8380 0.0051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197988912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:51 Heat of formation + Delta-G solvation = -42.524096 kcal Electronic energy + Delta-G solvation = -20635.910136 eV Core-core repulsion = 17285.595989 eV Total energy + Delta-G solvation = -3350.314147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75168 -39.58369 -38.67685 -35.57557 -34.63596 -33.30942 -32.58275 -31.24825 -30.58809 -27.21635 -25.82053 -24.71231 -23.05832 -22.94361 -21.01119 -20.53656 -18.82005 -18.41612 -17.17194 -16.88437 -16.82226 -16.31952 -15.60060 -15.56360 -14.77314 -14.65149 -14.47663 -13.93725 -13.84113 -13.27890 -13.06747 -13.01590 -12.34323 -12.25087 -11.89697 -11.85020 -11.79003 -11.58970 -11.09800 -10.91140 -10.82643 -10.68620 -10.53962 -9.91322 -9.70797 -9.39483 -9.17162 -9.16278 -8.88070 -8.39634 -6.04399 -4.07724 0.06480 0.69544 2.41648 2.57767 2.96846 3.30088 3.35087 3.36780 3.47308 3.56599 3.91433 4.05781 4.41930 4.62445 4.63586 4.75911 4.83645 4.97143 5.01810 5.31385 5.32077 5.45275 5.61640 5.63150 5.69992 5.74462 6.08782 6.32603 6.53208 6.58762 6.67409 6.75539 6.93941 7.21900 7.55704 7.59790 7.72116 7.93839 8.12012 8.34975 8.98578 9.56556 11.06871 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003299 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.752692 B = 8484.941931 C = 9948.341123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.298 6.298 4 C 0.278 3.722 5 C 0.063 3.937 6 N -0.405 5.405 7 C 0.063 3.937 8 C 0.081 3.919 9 C 0.566 3.434 10 O -0.527 6.527 11 N -0.701 5.701 12 C 0.113 3.887 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.475 5.475 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.182 0.818 30 H 0.187 0.813 31 H 0.407 0.593 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 20.367 -0.006 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.203 6.203 4 C 0.093 3.907 5 C -0.102 4.102 6 N -0.119 5.119 7 C -0.095 4.095 8 C -0.059 4.059 9 C 0.348 3.652 10 O -0.403 6.403 11 N -0.350 5.350 12 C -0.009 4.009 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.208 5.208 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.199 0.801 30 H 0.204 0.796 31 H 0.243 0.757 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.950 20.463 -0.006 23.697 hybrid contribution -1.013 -1.314 0.000 1.659 sum -12.963 19.149 -0.006 23.124 Atomic orbital electron populations 1.21824 0.92456 1.03376 1.03341 1.22794 0.95300 0.80328 1.03139 1.86278 1.15335 1.31485 1.87217 1.20919 0.85199 0.91129 0.93436 1.23231 0.92311 0.95216 0.99429 1.68643 1.02827 1.32832 1.07558 1.23669 1.02168 0.87164 0.96460 1.22099 0.89257 0.95902 0.98673 1.17649 0.86898 0.82583 0.78049 1.90823 1.13756 1.85516 1.50180 1.46101 1.11652 1.05343 1.71933 1.21799 0.92905 0.83739 1.02455 1.21903 0.99325 0.93646 1.01033 1.19026 0.94280 0.90288 0.97724 1.21156 0.92972 0.90920 1.51182 0.92690 1.25024 0.94910 0.99255 0.95228 1.69953 1.07673 1.25234 1.50385 0.86638 0.79961 0.82676 0.78591 1.20240 1.21250 1.20234 1.67988 1.04603 1.33640 1.14606 0.89850 0.91549 0.91542 0.91057 0.91057 0.80104 0.79580 0.75731 0.91214 0.91223 0.92621 0.92625 0.96200 0.96203 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.47 6.04 37.16 0.22 0.70 16 3 O -0.30 -2.75 10.13 -18.72 -0.19 -2.94 16 4 C 0.28 2.86 7.50 -16.94 -0.13 2.73 16 5 C 0.06 0.58 11.18 -17.03 -0.19 0.39 16 6 N -0.40 -4.34 10.48 -12.58 -0.13 -4.47 16 7 C 0.06 0.73 10.76 -17.02 -0.18 0.54 16 8 C 0.08 1.02 6.75 -82.86 -0.56 0.46 16 9 C 0.57 8.49 7.81 -12.20 -0.10 8.39 16 10 O -0.53 -9.29 16.34 5.35 0.09 -9.20 16 11 N -0.70 -10.31 5.55 -61.16 -0.34 -10.64 16 12 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 13 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 N -0.48 -5.55 8.60 -9.69 -0.08 -5.64 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 28 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.19 1.95 7.64 -52.48 -0.40 1.54 16 31 H 0.41 5.30 7.82 -40.82 -0.32 4.98 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -31.55 335.12 -6.48 -38.03 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.33 Total: 0.01 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.26 Total: -0.61 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.18 Total: -46.58 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.10 Total: -12.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.55 -6.48 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197988912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.492 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds