Wall clock time and date at job start Tue Mar 31 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47098 * 2 1 4 4 C 1.35673 * 116.99899 * 179.97438 * 3 2 1 5 5 C 1.39487 * 120.00804 * 180.02562 * 4 3 2 6 6 N 1.31958 * 120.11184 * 179.97438 * 5 4 3 7 7 C 1.32194 * 120.13961 * 359.97438 * 6 5 4 8 8 C 1.39238 * 120.02177 * 0.02562 * 7 6 5 9 9 C 1.48137 * 120.04994 * 179.97438 * 8 7 6 10 10 O 1.21517 * 120.00460 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99580 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00097 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47559 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47471 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47334 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99809 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99847 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47606 * 59.99938 * 19 17 15 21 21 H 1.48507 * 109.47230 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47051 * 299.99529 * 19 17 15 23 23 N 1.32163 * 120.00927 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.46896 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46979 * 300.00157 * 1 2 3 26 26 H 1.09005 * 109.46995 * 60.00320 * 1 2 3 27 27 H 1.09002 * 109.47218 * 239.99467 * 2 1 3 28 28 H 1.09005 * 109.46995 * 119.99679 * 2 1 3 29 29 H 1.07997 * 119.94990 * 359.97257 * 5 4 3 30 30 H 1.08004 * 119.98496 * 180.02562 * 7 6 5 31 31 H 0.97005 * 120.00156 * 359.97438 * 11 9 8 32 32 H 1.09003 * 109.46968 * 300.00095 * 12 11 9 33 33 H 1.09004 * 109.47001 * 59.99710 * 12 11 9 34 34 H 1.08998 * 109.46654 * 299.99906 * 13 12 11 35 35 H 1.09000 * 109.47079 * 59.99119 * 13 12 11 36 36 H 1.09003 * 109.47204 * 300.00233 * 14 13 12 37 37 H 1.09004 * 109.46853 * 59.99902 * 14 13 12 38 38 H 0.96998 * 119.99356 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8847 2.8139 0.0011 6 7 5.1926 2.9891 0.0022 7 6 6.0023 1.9442 0.0032 8 6 5.4761 0.6551 0.0026 9 6 6.3829 -0.5163 0.0032 10 8 7.5870 -0.3527 0.0046 11 7 5.8723 -1.7636 0.0021 12 6 6.7689 -2.9222 0.0032 13 6 5.9404 -4.2084 0.0023 14 6 6.8769 -5.4183 0.0028 15 6 6.0608 -6.6852 0.0025 16 1 4.9821 -6.6327 0.0016 17 6 6.6913 -7.9114 0.0034 18 7 8.0049 -7.9753 0.0041 19 14 5.6797 -9.4817 0.0024 20 1 4.8245 -9.5190 -1.2111 21 1 6.5886 -10.6561 0.0030 22 1 4.8217 -9.5186 1.2139 23 7 4.1566 0.4770 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.2263 3.6699 0.0007 30 1 7.0724 2.0905 0.0044 31 1 4.9111 -1.8943 0.0013 32 1 7.3991 -2.8948 -0.8858 33 1 7.3963 -2.8952 0.8942 34 1 5.3107 -4.2355 0.8915 35 1 5.3127 -4.2356 -0.8884 36 1 7.5064 -5.3910 -0.8867 37 1 7.5049 -5.3913 0.8933 38 1 8.4483 -8.8380 0.0051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197988912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:50 Heat of formation + Delta-G solvation = -65.960856 kcal Electronic energy + Delta-G solvation = -20636.926430 eV Core-core repulsion = 17285.595989 eV Total energy + Delta-G solvation = -3351.330441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61231 -40.70208 -39.50073 -37.07566 -35.63134 -35.07996 -33.33386 -32.90555 -31.38822 -28.86369 -26.90529 -25.71310 -24.64936 -23.58117 -22.36702 -22.04277 -19.76179 -19.34006 -18.54037 -17.94894 -17.64889 -17.63426 -16.93056 -16.83328 -16.43225 -15.84215 -15.37377 -15.18104 -15.10429 -14.27537 -14.05324 -13.78391 -13.73258 -13.53615 -13.51132 -13.05261 -12.73039 -12.58180 -12.43618 -12.41263 -12.40383 -11.87470 -11.78295 -11.69617 -11.43635 -11.22600 -10.54629 -10.46509 -10.27694 -9.90193 -8.19455 -6.30882 -0.81905 -0.14071 1.41854 1.44682 1.50787 1.52519 1.68951 1.83616 2.42073 2.54604 2.65021 3.08876 3.14402 3.24660 3.74669 3.92711 4.07537 4.11462 4.16297 4.18104 4.30932 4.44409 4.52334 4.72654 4.90624 4.91389 4.96256 4.98944 5.14449 5.23369 5.29101 5.50838 5.69996 5.78641 5.83852 5.90253 6.21494 6.28770 6.48921 6.86169 6.94433 7.38648 8.92411 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003299 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.752692 B = 8484.941931 C = 9948.341123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.295 6.295 4 C 0.273 3.727 5 C 0.084 3.916 6 N -0.414 5.414 7 C 0.066 3.934 8 C 0.063 3.937 9 C 0.569 3.431 10 O -0.559 6.559 11 N -0.694 5.694 12 C 0.127 3.873 13 C -0.103 4.103 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.266 1.266 23 N -0.482 5.482 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.219 0.781 30 H 0.191 0.809 31 H 0.417 0.583 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.066 0.934 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.453 21.230 -0.008 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.200 6.200 4 C 0.087 3.913 5 C -0.082 4.082 6 N -0.128 5.128 7 C -0.091 4.091 8 C -0.075 4.075 9 C 0.353 3.647 10 O -0.437 6.437 11 N -0.344 5.344 12 C 0.003 3.997 13 C -0.140 4.140 14 C -0.013 4.013 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.190 1.190 23 N -0.215 5.215 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.235 0.765 30 H 0.207 0.793 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.640 21.332 -0.008 25.873 hybrid contribution -0.256 -1.485 0.000 1.507 sum -14.896 19.847 -0.008 24.815 Atomic orbital electron populations 1.21827 0.90701 1.04243 1.03714 1.22951 0.96676 0.79714 1.02739 1.86300 1.14537 1.32210 1.86973 1.21160 0.85531 0.91261 0.93323 1.23864 0.92103 0.95939 0.96282 1.68745 1.03516 1.32248 1.08247 1.23729 1.02622 0.86932 0.95798 1.21635 0.89382 0.95049 1.01474 1.17938 0.86850 0.83021 0.76902 1.90801 1.15272 1.86034 1.51595 1.45880 1.11783 1.04730 1.72027 1.21419 0.92690 0.83954 1.01610 1.21606 0.98303 0.92043 1.02086 1.18932 0.94593 0.92498 0.95284 1.21649 0.93784 0.92006 1.50644 0.91612 1.26005 0.96032 1.03201 0.94761 1.70100 1.09619 1.26157 1.51573 0.85484 0.78334 0.77870 0.79258 1.19045 1.21181 1.19031 1.67874 1.04242 1.34622 1.14800 0.88750 0.91162 0.91154 0.91473 0.91476 0.76466 0.79253 0.74554 0.92183 0.92192 0.91477 0.91483 0.98712 0.98718 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.77 6.04 71.98 0.43 1.20 16 3 O -0.30 -4.77 10.13 -89.90 -0.91 -5.68 16 4 C 0.27 5.03 7.50 84.94 0.64 5.67 16 5 C 0.08 1.30 11.18 84.98 0.95 2.25 16 6 N -0.41 -8.04 10.48 -193.72 -2.03 -10.07 16 7 C 0.07 1.45 10.76 84.88 0.91 2.36 16 8 C 0.06 1.55 6.75 41.82 0.28 1.84 16 9 C 0.57 17.10 7.81 86.87 0.68 17.78 16 10 O -0.56 -20.10 16.34 -3.77 -0.06 -20.16 16 11 N -0.69 -20.23 5.55 -465.69 -2.58 -22.81 16 12 C 0.13 4.40 5.67 86.38 0.49 4.89 16 13 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 16 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 19 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 N -0.48 -10.63 8.60 -297.47 -2.56 -13.19 16 24 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 28 H 0.07 1.01 8.11 -2.38 -0.02 0.99 16 29 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.19 3.92 7.64 -2.91 -0.02 3.90 16 31 H 0.42 10.47 7.82 -92.70 -0.73 9.74 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -68.03 335.12 0.64 -67.39 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.34 Total: 11.95 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.13 Total: 3.54 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -6.89 Total: -102.45 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.97 Total: -25.83 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.03 0.64 -67.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197988912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.426 kcal (2) G-P(sol) polarization free energy of solvation -68.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds