Wall clock time and date at job start Tue Mar 31 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00299 * 2 1 4 4 H 1.08005 * 120.00230 * 322.04115 * 3 2 1 5 5 C 1.38821 * 120.00098 * 142.03633 * 3 2 1 6 6 N 1.31619 * 119.99872 * 157.02135 * 5 3 2 7 7 Si 1.86796 * 119.99635 * 337.02138 * 5 3 2 8 8 H 1.48510 * 109.46904 * 95.68107 * 7 5 3 9 9 H 1.48498 * 109.47306 * 215.67688 * 7 5 3 10 10 H 1.48495 * 109.47666 * 335.68026 * 7 5 3 11 11 C 1.46505 * 119.99597 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.46900 * 89.99761 * 11 2 1 13 13 C 1.53004 * 109.46968 * 179.97438 * 12 11 2 14 14 N 1.46501 * 109.47291 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99869 * 180.02562 * 14 13 12 16 16 O 1.21533 * 120.00541 * 359.97438 * 15 14 13 17 17 C 1.47983 * 119.99849 * 179.97438 * 15 14 13 18 18 C 1.39916 * 120.91259 * 179.97438 * 17 15 14 19 19 C 1.38009 * 119.00841 * 180.02562 * 18 17 15 20 20 N 1.31989 * 120.89249 * 0.02562 * 19 18 17 21 21 O 1.41604 * 118.98884 * 179.97438 * 20 19 18 22 22 C 1.31993 * 122.02568 * 0.23794 * 20 19 18 23 23 C 1.38013 * 120.88576 * 359.48619 * 22 20 19 24 24 H 1.09000 * 109.46972 * 265.65070 * 1 2 3 25 25 H 1.09002 * 109.46762 * 25.64403 * 1 2 3 26 26 H 1.08994 * 109.47526 * 145.64983 * 1 2 3 27 27 H 0.97002 * 119.99530 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46951 * 330.00109 * 11 2 1 29 29 H 1.08999 * 109.46792 * 210.00173 * 11 2 1 30 30 H 1.09006 * 109.47558 * 60.00396 * 12 11 2 31 31 H 1.08999 * 109.47734 * 299.99835 * 12 11 2 32 32 H 1.08997 * 109.47018 * 60.00218 * 13 12 11 33 33 H 1.08999 * 109.47648 * 300.00415 * 13 12 11 34 34 H 0.96993 * 119.99851 * 359.97438 * 14 13 12 35 35 H 1.07997 * 120.49833 * 0.02562 * 18 17 15 36 36 H 1.08006 * 119.55421 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.55654 * 179.74528 * 22 20 19 38 38 H 1.08003 * 120.49041 * 180.23654 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7811 2.0223 -0.5753 5 6 3.3176 1.3130 0.7396 6 7 4.2045 2.2302 0.4165 7 14 3.6303 0.1822 2.1931 8 1 4.4679 -0.9641 1.7573 9 1 4.3368 0.9333 3.2617 10 1 2.3351 -0.3218 2.7159 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7098 -1.4432 13 6 3.2178 -3.0346 -1.4438 14 7 3.4624 -3.4567 -2.8252 15 6 4.1250 -4.6041 -3.0720 16 8 4.5199 -5.2885 -2.1486 17 6 4.3716 -5.0307 -4.4673 18 6 5.0577 -6.2179 -4.7454 19 6 5.2664 -6.5778 -6.0613 20 7 4.8292 -5.8192 -7.0489 21 8 5.0661 -6.2268 -8.3841 22 6 4.1824 -4.6896 -6.8302 23 6 3.9257 -4.2575 -5.5448 24 1 -0.3633 -0.0779 1.0247 25 1 -0.3633 0.9265 -0.4448 26 1 -0.3634 -0.8484 -0.5798 27 1 5.0208 2.3188 0.9331 28 1 1.6082 -2.0287 0.5129 29 1 3.1498 -1.1387 0.5134 30 1 3.0415 -0.9500 -1.9568 31 1 1.4999 -1.8399 -1.9571 32 1 2.6291 -3.7946 -0.9302 33 1 4.1702 -2.9042 -0.9301 34 1 3.1469 -2.9107 -3.5622 35 1 5.4187 -6.8433 -3.9423 36 1 5.7947 -7.4927 -6.2860 37 1 3.8458 -4.0975 -7.6684 38 1 3.3925 -3.3341 -5.3733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233571363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:07 Heat of formation + Delta-G solvation = 50.278442 kcal Electronic energy + Delta-G solvation = -20799.921391 eV Core-core repulsion = 17453.631464 eV Total energy + Delta-G solvation = -3346.289927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.82944 -39.78206 -36.69120 -35.16349 -34.92117 -32.49499 -31.91493 -31.10164 -30.15479 -26.73421 -25.98498 -24.94769 -24.48314 -22.01750 -21.29878 -20.70568 -18.92819 -17.83701 -17.28989 -16.85277 -16.25182 -16.09207 -15.79761 -15.68500 -15.20790 -14.75797 -14.47951 -14.13437 -13.67283 -13.35314 -13.05474 -12.86437 -12.64697 -12.29471 -11.83680 -11.62375 -11.44005 -11.35704 -11.03548 -10.67229 -10.54169 -10.36040 -10.26581 -9.89888 -9.73495 -9.63512 -9.31937 -8.97774 -8.60889 -6.93167 -6.10240 -3.52053 -0.29294 0.08738 2.09932 2.15680 2.68017 2.97691 3.23030 3.40767 3.45542 3.81682 3.94096 3.99980 4.07483 4.34613 4.43174 4.78692 4.87399 4.90484 5.16770 5.22157 5.25178 5.29659 5.46784 5.64724 5.87833 5.90962 6.16300 6.19434 6.23318 6.26210 6.47794 6.60970 6.61893 6.62498 6.77518 7.14195 7.77663 7.95218 8.27514 8.88052 9.60587 10.01410 11.05182 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.003206 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.648008 B = 8731.120095 C = 8912.775072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.274 4.274 4 H 0.079 0.921 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.876 3.124 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.148 4.148 13 C 0.116 3.884 14 N -0.711 5.711 15 C 0.554 3.446 16 O -0.524 6.524 17 C -0.088 4.088 18 C -0.065 4.065 19 C 0.069 3.931 20 N -0.108 5.108 21 O -0.541 6.541 22 C 0.072 3.928 23 C -0.091 4.091 24 H 0.007 0.993 25 H 0.045 0.955 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.402 0.598 35 H 0.176 0.824 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 -14.184 -8.476 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.403 4.403 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.706 3.294 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.015 3.985 12 C -0.188 4.188 13 C -0.007 4.007 14 N -0.362 5.362 15 C 0.338 3.662 16 O -0.401 6.401 17 C -0.100 4.100 18 C -0.085 4.085 19 C -0.076 4.076 20 N 0.214 4.786 21 O -0.598 6.598 22 C -0.074 4.074 23 C -0.110 4.110 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.237 0.763 35 H 0.194 0.806 36 H 0.206 0.794 37 H 0.207 0.793 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.470 -14.651 -8.121 16.816 hybrid contribution 0.197 -0.249 0.302 0.438 sum -1.273 -14.900 -7.819 16.876 Atomic orbital electron populations 1.21091 0.84512 0.99037 0.97492 1.44038 1.00819 1.01944 1.86761 1.18784 1.06125 0.90859 1.24516 0.90393 1.25491 0.96821 0.96457 0.97623 1.69877 1.08431 1.36096 1.39372 0.86952 0.78037 0.80041 0.84390 1.21182 1.22757 1.19427 1.21036 0.96698 0.87949 0.92777 1.22432 0.99604 0.94336 1.02448 1.21629 1.01175 0.97280 0.80640 1.46052 1.56665 1.22904 1.10598 1.17896 0.79111 0.81824 0.87342 1.90831 1.50589 1.53804 1.44894 1.20721 0.98742 0.95833 0.94663 1.21991 0.94706 0.95616 0.96172 1.22701 0.99402 0.99128 0.86353 1.43369 1.15909 1.07944 1.11363 1.97684 1.87514 1.85444 0.89127 1.22634 0.96122 0.89273 0.99333 1.22065 0.97983 1.00713 0.90283 0.97476 0.93602 0.95482 0.92604 0.94035 0.92628 0.90346 0.92039 0.91228 0.90932 0.76303 0.80616 0.79364 0.79349 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.29 10.70 59.85 0.64 2.93 16 2 N -0.61 -13.59 2.47 -181.12 -0.45 -14.04 16 3 C -0.27 -7.28 9.88 -15.06 -0.15 -7.43 16 4 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.90 -26.24 13.97 55.49 0.78 -25.46 16 7 Si 0.88 21.30 25.10 -169.99 -4.27 17.04 16 8 H -0.28 -6.63 6.68 56.52 0.38 -6.25 16 9 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.14 2.74 4.53 -4.04 -0.02 2.73 16 12 C -0.15 -2.24 5.65 -26.73 -0.15 -2.39 16 13 C 0.12 1.52 5.67 -4.04 -0.02 1.50 16 14 N -0.71 -7.22 5.51 -61.21 -0.34 -7.55 16 15 C 0.55 5.95 7.79 -12.27 -0.10 5.85 16 16 O -0.52 -7.53 16.44 5.34 0.09 -7.44 16 17 C -0.09 -0.68 5.91 -104.65 -0.62 -1.30 16 18 C -0.07 -0.45 9.68 -39.04 -0.38 -0.83 16 19 C 0.07 0.54 10.67 -17.57 -0.19 0.36 16 20 N -0.11 -1.19 3.58 -13.30 -0.05 -1.24 16 21 O -0.54 -9.47 20.04 -11.47 -0.23 -9.70 16 22 C 0.07 0.54 10.67 -17.56 -0.19 0.35 16 23 C -0.09 -0.52 9.61 -39.04 -0.38 -0.89 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.05 0.83 8.00 -51.93 -0.42 0.42 16 26 H 0.03 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.06 1.21 3.38 -51.93 -0.18 1.03 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.40 2.89 6.61 -40.82 -0.27 2.62 16 35 H 0.18 0.97 7.74 -52.49 -0.41 0.57 16 36 H 0.19 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.17 0.44 6.53 -52.48 -0.34 0.09 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -37.63 325.72 -6.18 -43.81 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.99 Total: -2.13 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.63 Total: 1.81 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.06 Total: -48.30 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.14 Total: -17.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.27 Total: 17.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.63 -6.18 -43.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233571363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.091 kcal (2) G-P(sol) polarization free energy of solvation -37.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds