Wall clock time and date at job start Tue Mar 31 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00299 * 2 1 4 4 H 1.08005 * 120.00230 * 322.04115 * 3 2 1 5 5 C 1.38821 * 120.00098 * 142.03633 * 3 2 1 6 6 N 1.31619 * 119.99872 * 157.02135 * 5 3 2 7 7 Si 1.86796 * 119.99635 * 337.02138 * 5 3 2 8 8 H 1.48510 * 109.46904 * 95.68107 * 7 5 3 9 9 H 1.48498 * 109.47306 * 215.67688 * 7 5 3 10 10 H 1.48495 * 109.47666 * 335.68026 * 7 5 3 11 11 C 1.46505 * 119.99597 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.46900 * 89.99761 * 11 2 1 13 13 C 1.53004 * 109.46968 * 179.97438 * 12 11 2 14 14 N 1.46501 * 109.47291 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99869 * 180.02562 * 14 13 12 16 16 O 1.21533 * 120.00541 * 359.97438 * 15 14 13 17 17 C 1.47983 * 119.99849 * 179.97438 * 15 14 13 18 18 C 1.39916 * 120.91259 * 179.97438 * 17 15 14 19 19 C 1.38009 * 119.00841 * 180.02562 * 18 17 15 20 20 N 1.31989 * 120.89249 * 0.02562 * 19 18 17 21 21 O 1.41604 * 118.98884 * 179.97438 * 20 19 18 22 22 C 1.31993 * 122.02568 * 0.23794 * 20 19 18 23 23 C 1.38013 * 120.88576 * 359.48619 * 22 20 19 24 24 H 1.09000 * 109.46972 * 265.65070 * 1 2 3 25 25 H 1.09002 * 109.46762 * 25.64403 * 1 2 3 26 26 H 1.08994 * 109.47526 * 145.64983 * 1 2 3 27 27 H 0.97002 * 119.99530 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46951 * 330.00109 * 11 2 1 29 29 H 1.08999 * 109.46792 * 210.00173 * 11 2 1 30 30 H 1.09006 * 109.47558 * 60.00396 * 12 11 2 31 31 H 1.08999 * 109.47734 * 299.99835 * 12 11 2 32 32 H 1.08997 * 109.47018 * 60.00218 * 13 12 11 33 33 H 1.08999 * 109.47648 * 300.00415 * 13 12 11 34 34 H 0.96993 * 119.99851 * 359.97438 * 14 13 12 35 35 H 1.07997 * 120.49833 * 0.02562 * 18 17 15 36 36 H 1.08006 * 119.55421 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.55654 * 179.74528 * 22 20 19 38 38 H 1.08003 * 120.49041 * 180.23654 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7811 2.0223 -0.5753 5 6 3.3176 1.3130 0.7396 6 7 4.2045 2.2302 0.4165 7 14 3.6303 0.1822 2.1931 8 1 4.4679 -0.9641 1.7573 9 1 4.3368 0.9333 3.2617 10 1 2.3351 -0.3218 2.7159 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7098 -1.4432 13 6 3.2178 -3.0346 -1.4438 14 7 3.4624 -3.4567 -2.8252 15 6 4.1250 -4.6041 -3.0720 16 8 4.5199 -5.2885 -2.1486 17 6 4.3716 -5.0307 -4.4673 18 6 5.0577 -6.2179 -4.7454 19 6 5.2664 -6.5778 -6.0613 20 7 4.8292 -5.8192 -7.0489 21 8 5.0661 -6.2268 -8.3841 22 6 4.1824 -4.6896 -6.8302 23 6 3.9257 -4.2575 -5.5448 24 1 -0.3633 -0.0779 1.0247 25 1 -0.3633 0.9265 -0.4448 26 1 -0.3634 -0.8484 -0.5798 27 1 5.0208 2.3188 0.9331 28 1 1.6082 -2.0287 0.5129 29 1 3.1498 -1.1387 0.5134 30 1 3.0415 -0.9500 -1.9568 31 1 1.4999 -1.8399 -1.9571 32 1 2.6291 -3.7946 -0.9302 33 1 4.1702 -2.9042 -0.9301 34 1 3.1469 -2.9107 -3.5622 35 1 5.4187 -6.8433 -3.9423 36 1 5.7947 -7.4927 -6.2860 37 1 3.8458 -4.0975 -7.6684 38 1 3.3925 -3.3341 -5.3733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233571363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:07 Heat of formation + Delta-G solvation = 22.178582 kcal Electronic energy + Delta-G solvation = -20801.139892 eV Core-core repulsion = 17453.631464 eV Total energy + Delta-G solvation = -3347.508428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51433 -40.67581 -38.19221 -36.31252 -35.71190 -33.86408 -33.08873 -32.35330 -31.17085 -28.17144 -27.44180 -25.77617 -25.30389 -23.36828 -22.51110 -21.93472 -19.67799 -18.79124 -18.44688 -18.03155 -17.38140 -16.85301 -16.81114 -16.75658 -16.36892 -15.82500 -15.39130 -15.26910 -15.06773 -14.81596 -14.51947 -14.03737 -13.71889 -13.37112 -13.20304 -12.95226 -12.67722 -12.65175 -12.36133 -12.24177 -12.14784 -11.73645 -11.36422 -11.35980 -10.81589 -10.80874 -10.61778 -10.28829 -10.02961 -8.74739 -8.20302 -5.57469 -0.97146 -0.45547 1.30790 1.40716 1.42170 1.43268 1.52855 1.82722 2.27701 2.41934 3.04246 3.15774 3.39606 3.40467 3.43986 3.48892 3.79451 4.09567 4.14647 4.28443 4.40875 4.41706 4.56113 4.61875 4.67888 4.74732 4.80018 4.81051 5.03975 5.17530 5.23886 5.27639 5.45736 5.67527 5.73972 5.95596 6.18091 6.33522 6.96442 7.01369 7.65045 8.06600 8.99325 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.003206 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.648008 B = 8731.120095 C = 8912.775072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.627 5.627 3 C -0.259 4.259 4 H 0.043 0.957 5 C -0.017 4.017 6 N -0.946 5.946 7 Si 0.937 3.063 8 H -0.271 1.271 9 H -0.312 1.312 10 H -0.261 1.261 11 C 0.131 3.869 12 C -0.130 4.130 13 C 0.126 3.874 14 N -0.701 5.701 15 C 0.558 3.442 16 O -0.562 6.562 17 C -0.087 4.087 18 C -0.055 4.055 19 C 0.075 3.925 20 N -0.133 5.133 21 O -0.615 6.615 22 C 0.076 3.924 23 C -0.068 4.068 24 H 0.011 0.989 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.418 0.582 35 H 0.191 0.809 36 H 0.204 0.796 37 H 0.207 0.793 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 -15.653 -8.088 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.352 5.352 3 C -0.389 4.389 4 H 0.061 0.939 5 C -0.214 4.214 6 N -0.590 5.590 7 Si 0.766 3.234 8 H -0.198 1.198 9 H -0.241 1.241 10 H -0.186 1.186 11 C 0.006 3.994 12 C -0.170 4.170 13 C 0.001 3.999 14 N -0.353 5.353 15 C 0.344 3.656 16 O -0.441 6.441 17 C -0.098 4.098 18 C -0.074 4.074 19 C -0.070 4.070 20 N 0.187 4.813 21 O -0.669 6.669 22 C -0.069 4.069 23 C -0.086 4.086 24 H 0.029 0.971 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.256 0.744 35 H 0.209 0.791 36 H 0.220 0.780 37 H 0.224 0.776 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.884 -16.155 -7.791 18.166 hybrid contribution 0.508 0.276 0.271 0.639 sum -2.376 -15.880 -7.520 17.730 Atomic orbital electron populations 1.21213 0.82210 1.00529 0.98348 1.44209 1.02379 1.01471 1.87098 1.18685 1.05744 0.91739 1.22732 0.93907 1.26048 0.97050 0.98318 0.99949 1.69994 1.09289 1.38852 1.40817 0.85963 0.78174 0.78504 0.80780 1.19763 1.24078 1.18573 1.21166 0.95618 0.87263 0.95359 1.22126 1.00799 0.94540 0.99560 1.21327 0.99959 0.96453 0.82117 1.45839 1.56435 1.22997 1.10071 1.18139 0.78216 0.81290 0.87952 1.90826 1.52050 1.54925 1.46277 1.20607 0.99190 0.96427 0.93551 1.22114 0.93996 0.95488 0.95815 1.23005 0.98571 0.99356 0.86037 1.43451 1.18086 1.09642 1.10130 1.97650 1.90113 1.86822 0.92266 1.23092 0.94731 0.88302 1.00759 1.22365 0.96620 1.01159 0.88505 0.97107 0.94120 0.91656 0.92875 0.91319 0.95233 0.92565 0.89447 0.90257 0.93035 0.74370 0.79147 0.77953 0.77648 0.77701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.12 10.70 127.77 1.37 5.49 16 2 N -0.63 -26.56 2.47 -726.93 -1.79 -28.36 16 3 C -0.26 -13.75 9.88 84.04 0.83 -12.92 16 4 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 5 C -0.02 -0.93 5.29 84.86 0.45 -0.48 16 6 N -0.95 -56.59 13.97 21.65 0.30 -56.29 16 7 Si 0.94 44.03 25.10 68.60 1.72 45.75 16 8 H -0.27 -11.98 6.68 99.48 0.66 -11.32 16 9 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 C 0.13 4.70 4.53 86.38 0.39 5.09 16 12 C -0.13 -3.53 5.65 30.59 0.17 -3.36 16 13 C 0.13 2.91 5.67 86.38 0.49 3.40 16 14 N -0.70 -11.69 5.51 -465.84 -2.57 -14.25 16 15 C 0.56 10.24 7.79 86.83 0.68 10.91 16 16 O -0.56 -14.81 16.44 -3.82 -0.06 -14.87 16 17 C -0.09 -1.06 5.91 -19.88 -0.12 -1.17 16 18 C -0.05 -0.62 9.68 22.62 0.22 -0.40 16 19 C 0.08 1.08 10.67 84.61 0.90 1.98 16 20 N -0.13 -2.81 3.58 -195.98 -0.70 -3.51 16 21 O -0.62 -22.18 20.04 -38.79 -0.78 -22.95 16 22 C 0.08 0.97 10.67 84.62 0.90 1.88 16 23 C -0.07 -0.51 9.61 22.62 0.22 -0.29 16 24 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.04 1.40 8.00 -2.39 -0.02 1.38 16 26 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 27 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 29 H 0.03 1.22 3.38 -2.39 -0.01 1.21 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.42 4.14 6.61 -92.71 -0.61 3.53 16 35 H 0.19 1.62 7.74 -2.91 -0.02 1.60 16 36 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.21 -0.02 6.53 -2.91 -0.02 -0.04 16 Total: -1.00 -85.03 325.72 3.04 -81.98 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 0.42 Total: 2.38 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.50 Total: 10.13 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.76 Total: -102.41 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.84 Total: -37.82 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.72 Total: 45.75 kcal Total: -85.03 3.04 -81.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233571363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.162 kcal (2) G-P(sol) polarization free energy of solvation -85.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds